Wall clock time and date at job start Tue Mar 31 2020 20:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47143 * 2 1 4 4 C 1.53001 * 109.47043 * 240.00371 * 2 1 3 5 5 N 1.46897 * 109.47220 * 184.99986 * 4 2 1 6 6 C 1.46895 * 111.00102 * 179.97438 * 5 4 2 7 7 C 1.50705 * 109.47407 * 179.97438 * 6 5 4 8 8 O 1.21294 * 119.99876 * 0.02562 * 7 6 5 9 9 N 1.34770 * 120.00156 * 179.97438 * 7 6 5 10 10 C 1.37098 * 119.99865 * 179.97438 * 9 7 6 11 11 H 1.07995 * 120.00505 * 0.02562 * 10 9 7 12 12 C 1.38954 * 119.99897 * 180.02562 * 10 9 7 13 13 N 1.31412 * 119.99957 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 120.00109 * 0.02562 * 12 10 9 15 15 H 1.48494 * 109.47233 * 90.00236 * 14 12 10 16 16 H 1.48502 * 109.47117 * 210.00177 * 14 12 10 17 17 H 1.48503 * 109.46997 * 329.99803 * 14 12 10 18 18 N 1.46499 * 109.47031 * 120.00123 * 2 1 3 19 19 C 1.34773 * 120.00421 * 274.99481 * 18 2 1 20 20 O 1.21283 * 119.99675 * 0.02562 * 19 18 2 21 21 C 1.50701 * 120.00348 * 179.97438 * 19 18 2 22 22 C 1.53000 * 109.46863 * 66.00308 * 21 19 18 23 23 C 1.52998 * 109.47134 * 306.00368 * 21 19 18 24 24 C 1.50697 * 109.46857 * 186.00119 * 21 19 18 25 25 C 1.34671 * 126.58917 * 237.64777 * 24 21 19 26 26 N 1.34129 * 108.02139 * 180.02562 * 25 24 21 27 27 C 1.30508 * 109.25561 * 0.02562 * 26 25 24 28 28 N 1.35045 * 108.69739 * 0.26064 * 27 26 25 29 29 H 0.97002 * 126.39762 * 179.73565 * 28 27 26 30 30 H 1.08996 * 109.47405 * 59.99638 * 1 2 3 31 31 H 1.09002 * 109.47143 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47020 * 299.99839 * 1 2 3 33 33 H 1.09001 * 109.47004 * 305.00055 * 4 2 1 34 34 H 1.08999 * 109.47469 * 64.99782 * 4 2 1 35 35 H 1.00899 * 111.00463 * 303.95253 * 5 4 2 36 36 H 1.09004 * 109.47739 * 300.00113 * 6 5 4 37 37 H 1.09005 * 109.47222 * 60.00235 * 6 5 4 38 38 H 0.96999 * 120.00303 * 0.02562 * 9 7 6 39 39 H 0.97000 * 120.00374 * 180.02562 * 13 12 10 40 40 H 0.97003 * 119.99605 * 95.00578 * 18 2 1 41 41 H 1.08996 * 109.47303 * 180.02562 * 22 21 19 42 42 H 1.08999 * 109.46957 * 300.00133 * 22 21 19 43 43 H 1.09000 * 109.47006 * 59.99684 * 22 21 19 44 44 H 1.09001 * 109.47002 * 299.99659 * 23 21 19 45 45 H 1.08999 * 109.47138 * 59.99590 * 23 21 19 46 46 H 1.08996 * 109.46919 * 179.97438 * 23 21 19 47 47 H 1.07999 * 125.98975 * 0.05182 * 25 24 21 48 48 H 1.07992 * 125.65230 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5040 -0.8266 -1.1905 6 6 4.0302 -1.5157 -2.3763 7 6 5.5316 -1.6043 -2.2809 8 8 6.1067 -1.1394 -1.3195 9 7 6.2352 -2.2008 -3.2634 10 6 7.6011 -2.2808 -3.1769 11 1 8.1133 -1.8662 -2.3213 12 6 8.3267 -2.8954 -4.1902 13 7 9.6359 -2.9726 -4.1070 14 14 7.4410 -3.6120 -5.6706 15 1 7.3208 -2.5741 -6.7257 16 1 8.2120 -4.7666 -6.1976 17 1 6.0861 -4.0652 -5.2652 18 7 2.0183 -0.6906 1.1961 19 6 2.1471 -0.0184 2.3571 20 8 1.8583 1.1583 2.4117 21 6 2.6489 -0.7290 3.5877 22 6 4.1047 -1.1494 3.3758 23 6 1.7919 -1.9700 3.8450 24 6 2.5609 0.1970 4.7734 25 6 3.5759 0.5752 5.5736 26 7 3.0821 1.4015 6.5077 27 6 1.7995 1.5492 6.3170 28 7 1.4327 0.8096 5.2483 29 1 0.5374 0.7296 4.8836 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6053 -1.7197 -1.2953 34 1 1.7516 -0.1583 -2.1370 35 1 3.9280 0.0826 -1.0825 36 1 3.6094 -2.5199 -2.4297 37 1 3.7556 -0.9586 -3.2721 38 1 5.7754 -2.5729 -4.0322 39 1 10.1424 -3.4013 -4.8145 40 1 2.2490 -1.6318 1.1525 41 1 4.4675 -1.6637 4.2657 42 1 4.1683 -1.8191 2.5182 43 1 4.7151 -0.2652 3.1924 44 1 0.7548 -1.6705 3.9960 45 1 1.8555 -2.6397 2.9874 46 1 2.1551 -2.4842 4.7348 47 1 4.6068 0.2675 5.4795 48 1 1.1401 2.1587 6.9169 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569030398.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:00 Heat of formation + Delta-G solvation = -45.998783 kcal Electronic energy + Delta-G solvation = -29412.805733 eV Core-core repulsion = 25309.338615 eV Total energy + Delta-G solvation = -4103.467118 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.12632 -40.98848 -40.24835 -37.90411 -36.39929 -36.04890 -35.09474 -33.72020 -33.35998 -31.82700 -29.51581 -29.06957 -28.23469 -26.63124 -25.15495 -24.39052 -23.02951 -22.20604 -21.66016 -21.23257 -20.74670 -20.25044 -19.10280 -17.88766 -17.71408 -17.33691 -16.76973 -16.44792 -16.15826 -15.84943 -15.62512 -15.43133 -15.28186 -15.05509 -14.94872 -14.81712 -14.58959 -14.42209 -14.27209 -14.04140 -13.72389 -13.30741 -13.26631 -13.11990 -13.03599 -12.98021 -12.79777 -12.67698 -12.58089 -12.39730 -12.22728 -11.96919 -11.82741 -11.49395 -11.04432 -10.91328 -10.70289 -10.41608 -10.23138 -9.99977 -9.35877 -9.31660 -8.39727 -6.00692 1.08907 1.30904 1.36941 1.45895 1.62769 1.99212 2.13835 2.24430 2.25611 2.35103 2.73551 3.17072 3.40104 3.48002 3.70868 3.84303 3.91261 3.92745 4.08142 4.14672 4.24688 4.38451 4.49777 4.50713 4.59293 4.63199 4.66739 4.67877 4.71908 4.78076 4.80063 4.81285 4.93728 5.06177 5.14839 5.19797 5.28246 5.34613 5.53806 5.57911 5.76285 5.91158 6.04605 6.29877 6.53282 6.61286 6.62276 6.90559 7.13011 7.27565 7.42343 7.99752 8.78025 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016503 B = 0.002372 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.268668 B =11803.824108 C =12947.278654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.144 3.856 3 H 0.057 0.943 4 C 0.054 3.946 5 N -0.681 5.681 6 C 0.063 3.937 7 C 0.447 3.553 8 O -0.614 6.614 9 N -0.592 5.592 10 C -0.327 4.327 11 H 0.053 0.947 12 C -0.018 4.018 13 N -0.936 5.936 14 Si 0.966 3.034 15 H -0.259 1.259 16 H -0.277 1.277 17 H -0.227 1.227 18 N -0.693 5.693 19 C 0.521 3.479 20 O -0.581 6.581 21 C 0.001 3.999 22 C -0.136 4.136 23 C -0.135 4.135 24 C 0.007 3.993 25 C -0.048 4.048 26 N -0.536 5.536 27 C 0.186 3.814 28 N -0.546 5.546 29 H 0.427 0.573 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.045 0.955 33 H 0.103 0.897 34 H 0.062 0.938 35 H 0.339 0.661 36 H 0.121 0.879 37 H 0.076 0.924 38 H 0.390 0.610 39 H 0.278 0.722 40 H 0.413 0.587 41 H 0.087 0.913 42 H 0.078 0.922 43 H 0.043 0.957 44 H 0.064 0.936 45 H 0.087 0.913 46 H 0.079 0.921 47 H 0.167 0.833 48 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.859 -0.593 9.244 29.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.039 3.961 3 H 0.076 0.924 4 C -0.075 4.075 5 N -0.313 5.313 6 C -0.069 4.069 7 C 0.235 3.765 8 O -0.498 6.498 9 N -0.234 5.234 10 C -0.456 4.456 11 H 0.071 0.929 12 C -0.216 4.216 13 N -0.577 5.577 14 Si 0.786 3.214 15 H -0.184 1.184 16 H -0.202 1.202 17 H -0.150 1.150 18 N -0.343 5.343 19 C 0.307 3.693 20 O -0.462 6.462 21 C -0.003 4.003 22 C -0.194 4.194 23 C -0.193 4.193 24 C -0.111 4.111 25 C -0.195 4.195 26 N -0.256 5.256 27 C -0.098 4.098 28 N -0.149 5.149 29 H 0.267 0.733 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.064 0.936 33 H 0.121 0.879 34 H 0.080 0.920 35 H 0.156 0.844 36 H 0.139 0.861 37 H 0.094 0.906 38 H 0.225 0.775 39 H 0.088 0.912 40 H 0.250 0.750 41 H 0.106 0.894 42 H 0.097 0.903 43 H 0.063 0.937 44 H 0.083 0.917 45 H 0.105 0.895 46 H 0.098 0.902 47 H 0.184 0.816 48 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -27.010 0.284 10.845 29.108 hybrid contribution -0.056 -0.095 -2.189 2.192 sum -27.066 0.190 8.656 28.417 Atomic orbital electron populations 1.22037 0.92989 1.03373 1.02482 1.20981 0.94959 0.96125 0.84063 0.92444 1.22392 0.86662 1.02364 0.96037 1.60060 1.05473 1.26312 1.39452 1.21645 0.89253 1.02591 0.93415 1.21080 0.90905 0.81457 0.83037 1.90564 1.72979 1.51813 1.34428 1.42034 1.06038 1.53950 1.21369 1.18987 0.82012 1.37305 1.07328 0.92852 1.26153 0.96200 0.97400 1.01885 1.69813 1.07575 1.44574 1.35760 0.85347 0.79832 0.78712 0.77497 1.18377 1.20239 1.15010 1.45783 1.65552 1.14642 1.08355 1.20688 0.76639 0.86638 0.85346 1.90678 1.52210 1.17399 1.85875 1.19231 0.99286 0.94334 0.87485 1.21820 0.91658 1.01785 1.04118 1.21917 0.98524 0.94437 1.04417 1.20665 0.87695 1.03043 0.99685 1.22237 0.99718 1.01745 0.95840 1.70237 1.09298 1.19264 1.26795 1.25631 0.93344 0.99132 0.91647 1.43069 1.10697 1.36313 1.24778 0.73326 0.90267 0.90360 0.93602 0.87882 0.92030 0.84368 0.86087 0.90630 0.77458 0.91223 0.74998 0.89377 0.90275 0.93746 0.91737 0.89460 0.90203 0.81589 0.74112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.48 71.98 0.68 -1.18 16 2 C 0.14 2.47 2.81 44.99 0.13 2.60 16 3 H 0.06 1.35 7.58 -2.39 -0.02 1.33 16 4 C 0.05 0.82 5.24 86.30 0.45 1.28 16 5 N -0.68 -16.76 5.85 -517.93 -3.03 -19.79 16 6 C 0.06 1.65 6.17 85.56 0.53 2.17 16 7 C 0.45 18.96 7.82 87.66 0.69 19.65 16 8 O -0.61 -32.76 15.78 -3.07 -0.05 -32.80 16 9 N -0.59 -26.69 5.09 -306.99 -1.56 -28.26 16 10 C -0.33 -18.80 10.16 84.04 0.85 -17.95 16 11 H 0.05 3.69 7.39 -2.91 -0.02 3.67 16 12 C -0.02 -0.99 5.50 84.93 0.47 -0.52 16 13 N -0.94 -56.12 13.96 21.66 0.30 -55.82 16 14 Si 0.97 37.69 27.74 68.60 1.90 39.59 16 15 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 16 H -0.28 -10.83 7.11 99.48 0.71 -10.13 16 17 H -0.23 -7.23 6.52 99.48 0.65 -6.58 16 18 N -0.69 -12.48 4.64 -442.54 -2.05 -14.53 16 19 C 0.52 11.81 6.44 87.66 0.56 12.37 16 20 O -0.58 -17.59 15.47 -3.04 -0.05 -17.64 16 21 C 0.00 0.02 0.86 -53.68 -0.05 -0.02 16 22 C -0.14 -2.81 7.36 71.98 0.53 -2.28 16 23 C -0.14 -1.60 8.30 71.98 0.60 -1.01 16 24 C 0.01 0.15 5.03 40.95 0.21 0.36 16 25 C -0.05 -1.28 10.84 83.52 0.91 -0.37 16 26 N -0.54 -14.58 11.25 -200.31 -2.25 -16.83 16 27 C 0.19 3.62 13.04 180.26 2.35 5.97 16 28 N -0.55 -10.06 5.84 -186.49 -1.09 -11.15 16 29 H 0.43 5.73 8.96 -92.71 -0.83 4.90 16 30 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.34 10.10 8.43 -89.69 -0.76 9.35 16 36 H 0.12 2.45 8.14 -2.38 -0.02 2.43 16 37 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 38 H 0.39 14.30 5.76 -92.71 -0.53 13.77 16 39 H 0.28 15.25 8.31 -92.71 -0.77 14.48 16 40 H 0.41 6.21 7.53 -92.71 -0.70 5.52 16 41 H 0.09 1.53 7.88 -2.39 -0.02 1.51 16 42 H 0.08 1.60 8.00 -2.39 -0.02 1.58 16 43 H 0.04 1.14 8.04 -2.39 -0.02 1.12 16 44 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.09 0.76 7.25 -2.39 -0.02 0.74 16 46 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.17 4.17 7.33 -2.91 -0.02 4.15 16 48 H 0.24 2.37 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -86.99 399.21 -0.83 -87.82 By element: Atomic # 1 Polarization: 50.19 SS G_CDS: -1.86 Total: 48.33 kcal Atomic # 6 Polarization: 12.17 SS G_CDS: 8.91 Total: 21.07 kcal Atomic # 7 Polarization: -136.68 SS G_CDS: -9.68 Total: -146.37 kcal Atomic # 8 Polarization: -50.35 SS G_CDS: -0.10 Total: -50.45 kcal Atomic # 14 Polarization: 37.69 SS G_CDS: 1.90 Total: 39.59 kcal Total: -86.99 -0.83 -87.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569030398.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.822 kcal (2) G-P(sol) polarization free energy of solvation -86.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds