Wall clock time and date at job start Tue Mar 31 2020 20:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46504 * 109.47184 * 2 1 4 4 N 1.39931 * 125.75588 * 270.00473 * 3 2 1 5 5 C 1.30449 * 108.89669 * 179.73521 * 4 3 2 6 6 C 1.41282 * 108.02339 * 0.40929 * 5 4 3 7 7 C 1.47429 * 126.41632 * 179.86083 * 6 5 4 8 8 O 1.21604 * 120.00098 * 179.68916 * 7 6 5 9 9 N 1.34770 * 119.99870 * 359.67974 * 7 6 5 10 10 C 1.46500 * 120.00256 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.46596 * 325.00243 * 10 9 7 12 12 C 1.53006 * 109.47249 * 84.99846 * 10 9 7 13 13 C 1.52997 * 109.47473 * 205.00145 * 10 9 7 14 14 N 1.46894 * 109.46972 * 54.99834 * 13 10 9 15 15 C 1.46901 * 110.99870 * 180.02562 * 14 13 10 16 16 C 1.50704 * 109.47178 * 179.97438 * 15 14 13 17 17 O 1.21297 * 119.99726 * 359.97438 * 16 15 14 18 18 N 1.34776 * 120.00047 * 180.02562 * 16 15 14 19 19 C 1.37095 * 120.00091 * 179.97438 * 18 16 15 20 20 H 1.08003 * 120.00068 * 0.02562 * 19 18 16 21 21 C 1.38947 * 120.00275 * 179.97438 * 19 18 16 22 22 N 1.31407 * 119.99985 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00048 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47442 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47039 * 120.00385 * 23 21 19 26 26 H 1.48502 * 109.47350 * 240.00193 * 23 21 19 27 27 C 1.34253 * 125.75201 * 90.00114 * 3 2 1 28 28 C 1.50702 * 126.29375 * 359.97438 * 27 3 2 29 29 H 1.08996 * 109.47327 * 59.99690 * 1 2 3 30 30 H 1.09008 * 109.46731 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47310 * 299.99521 * 1 2 3 32 32 H 1.09002 * 109.47174 * 240.00007 * 2 1 3 33 33 H 1.09002 * 109.47760 * 120.00287 * 2 1 3 34 34 H 1.07998 * 125.98465 * 180.25942 * 5 4 3 35 35 H 0.97005 * 120.00370 * 0.02562 * 9 7 6 36 36 H 1.09001 * 109.47002 * 60.00085 * 12 10 9 37 37 H 1.08993 * 109.46955 * 180.02562 * 12 10 9 38 38 H 1.09000 * 109.47050 * 300.00351 * 12 10 9 39 39 H 1.08993 * 109.47322 * 174.99832 * 13 10 9 40 40 H 1.09002 * 109.47196 * 294.99955 * 13 10 9 41 41 H 1.00900 * 111.00304 * 56.04803 * 14 13 10 42 42 H 1.08998 * 109.47443 * 299.99888 * 15 14 13 43 43 H 1.08999 * 109.47029 * 60.00268 * 15 14 13 44 44 H 0.96995 * 119.99696 * 0.02562 * 18 16 15 45 45 H 0.97005 * 120.00448 * 179.97438 * 22 21 19 46 46 H 1.09002 * 109.47320 * 270.00321 * 28 27 3 47 47 H 1.09000 * 109.47155 * 30.00057 * 28 27 3 48 48 H 1.09000 * 109.47430 * 150.00161 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2908 2.1522 -1.1356 5 6 2.7016 3.3311 -0.7572 6 6 2.7166 3.3562 0.6553 7 6 3.1175 4.4915 1.5062 8 8 3.0801 4.3867 2.7171 9 7 3.5254 5.6454 0.9419 10 6 3.9243 6.7734 1.7874 11 1 3.3055 6.7915 2.6846 12 6 5.3938 6.6186 2.1845 13 6 3.7399 8.0806 1.0142 14 7 2.3560 8.1721 0.5300 15 6 2.1417 9.4173 -0.2193 16 6 0.7144 9.4753 -0.6995 17 8 -0.0490 8.5683 -0.4431 18 7 0.2865 10.5345 -1.4147 19 6 -1.0118 10.5870 -1.8520 20 1 -1.6918 9.7798 -1.6230 21 6 -1.4531 11.6792 -2.5889 22 7 -0.6259 12.6616 -2.8671 23 14 -3.2223 11.7510 -3.1840 24 1 -3.9435 10.5307 -2.7414 25 1 -3.8871 12.9516 -2.6165 26 1 -3.2430 11.8283 -4.6669 27 6 2.2798 2.1208 1.0895 28 6 2.1245 1.6830 2.5232 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.9833 4.1444 -1.4095 35 1 3.5550 5.7291 -0.0240 36 1 6.0126 6.6004 1.2873 37 1 5.6904 7.4576 2.8138 38 1 5.5252 5.6873 2.7354 39 1 3.9515 8.9243 1.6710 40 1 4.4237 8.1004 0.1656 41 1 1.7001 8.0911 1.2924 42 1 2.3424 10.2705 0.4286 43 1 2.8144 9.4458 -1.0765 44 1 0.8974 11.2592 -1.6207 45 1 -0.9338 13.4239 -3.3819 46 1 1.1182 1.9203 2.8686 47 1 2.2890 0.6078 2.5946 48 1 2.8538 2.2041 3.1433 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569088122.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:33 Heat of formation + Delta-G solvation = -6.382567 kcal Electronic energy + Delta-G solvation = -28790.794058 eV Core-core repulsion = 24689.044828 eV Total energy + Delta-G solvation = -4101.749230 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.57701 -39.31612 -38.24490 -36.51167 -34.90962 -34.21975 -33.59400 -32.27395 -31.31896 -31.11457 -29.53528 -27.55174 -27.37777 -25.02025 -24.29295 -23.30104 -22.70727 -21.24105 -20.19764 -19.65762 -19.18414 -17.88554 -17.64560 -16.58165 -16.13762 -15.78332 -15.64975 -15.13816 -14.99556 -14.69392 -14.53971 -14.16987 -14.11125 -13.86577 -13.81242 -13.47897 -13.29778 -13.22694 -13.12368 -12.67870 -12.54831 -12.51047 -12.35598 -12.21352 -11.93857 -11.74262 -11.69344 -11.50620 -11.45908 -11.04673 -10.91181 -10.86220 -10.33332 -10.21245 -9.69976 -9.53645 -9.50600 -8.98327 -8.59053 -8.44787 -8.06293 -7.94506 -6.40695 -3.81255 1.44450 2.13730 2.17867 3.17239 3.27743 3.35202 3.37769 3.59126 3.92633 4.08773 4.18302 4.32852 4.38876 4.57539 4.68393 4.75118 4.85099 4.89498 5.09491 5.13819 5.16846 5.18120 5.25834 5.31192 5.35725 5.37787 5.46773 5.50644 5.63528 5.64621 5.66426 5.76384 5.80744 5.89981 5.97762 6.02614 6.13286 6.27807 6.34930 6.66321 6.72440 7.19268 7.45860 7.56667 7.64082 7.76995 8.08014 8.46750 8.62797 9.19562 9.55930 10.07578 10.77191 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010536 B = 0.002499 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2656.981072 B =11200.015097 C =13240.742817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.125 3.875 3 N -0.362 5.362 4 N -0.299 5.299 5 C 0.089 3.911 6 C -0.294 4.294 7 C 0.600 3.400 8 O -0.560 6.560 9 N -0.704 5.704 10 C 0.148 3.852 11 H 0.086 0.914 12 C -0.160 4.160 13 C 0.048 3.952 14 N -0.666 5.666 15 C 0.051 3.949 16 C 0.441 3.559 17 O -0.581 6.581 18 N -0.565 5.565 19 C -0.297 4.297 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.281 1.281 27 C 0.154 3.846 28 C -0.098 4.098 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.190 0.810 35 H 0.404 0.596 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.042 0.958 40 H 0.077 0.923 41 H 0.351 0.649 42 H 0.043 0.957 43 H 0.086 0.914 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.086 0.914 47 H 0.067 0.933 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.940 -19.945 8.155 24.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.004 3.996 3 N -0.142 5.142 4 N -0.118 5.118 5 C -0.099 4.099 6 C -0.309 4.309 7 C 0.388 3.612 8 O -0.440 6.440 9 N -0.354 5.354 10 C 0.043 3.957 11 H 0.104 0.896 12 C -0.219 4.219 13 C -0.082 4.082 14 N -0.299 5.299 15 C -0.082 4.082 16 C 0.226 3.774 17 O -0.465 6.465 18 N -0.202 5.202 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.207 1.207 27 C 0.022 3.978 28 C -0.156 4.156 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.116 0.884 33 H 0.112 0.888 34 H 0.207 0.793 35 H 0.238 0.762 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.060 0.940 40 H 0.095 0.905 41 H 0.170 0.830 42 H 0.061 0.939 43 H 0.104 0.896 44 H 0.225 0.775 45 H 0.080 0.920 46 H 0.104 0.896 47 H 0.085 0.915 48 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 11.156 -21.718 7.489 25.538 hybrid contribution -0.366 1.958 0.193 2.002 sum 10.790 -19.760 7.682 23.788 Atomic orbital electron populations 1.22195 0.93854 1.03234 1.03722 1.21751 0.95616 0.77651 1.04574 1.48560 1.49989 1.12257 1.03434 1.77188 1.22602 1.04603 1.07367 1.24056 0.96505 0.95388 0.93944 1.19989 1.21044 0.96292 0.93542 1.17122 0.75727 0.81589 0.86754 1.90692 1.56175 1.82905 1.14209 1.45551 1.67192 1.12160 1.10464 1.20897 0.95617 0.84943 0.94252 0.89579 1.22141 0.95613 1.02532 1.01645 1.22317 0.91788 0.95491 0.98650 1.60049 1.03080 1.36380 1.30365 1.21678 0.97241 0.90750 0.98542 1.19826 0.88872 0.84417 0.84281 1.90541 1.56593 1.38399 1.60957 1.41869 1.12150 1.18848 1.47313 1.19747 0.87205 1.05534 1.30220 0.87914 1.25253 1.00014 0.95321 0.97404 1.69618 1.35665 1.09125 1.39990 0.85812 0.81986 0.78347 0.78278 1.19222 1.20788 1.20744 1.21484 0.94418 0.90852 0.91031 1.20668 1.05093 1.01195 0.88607 0.91280 0.90309 0.91783 0.88395 0.88760 0.79315 0.76157 0.92380 0.91752 0.91886 0.93964 0.90485 0.82952 0.93884 0.89600 0.77494 0.91954 0.89584 0.91454 0.87563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.13 10.24 37.16 0.38 -0.75 16 2 C 0.12 0.86 6.93 -4.04 -0.03 0.83 16 3 N -0.36 -4.00 3.58 -56.60 -0.20 -4.20 16 4 N -0.30 -3.93 12.50 30.86 0.39 -3.55 16 5 C 0.09 1.11 11.50 -16.98 -0.20 0.92 16 6 C -0.29 -3.88 6.13 -105.07 -0.64 -4.52 16 7 C 0.60 8.42 7.78 -12.52 -0.10 8.32 16 8 O -0.56 -9.00 14.50 5.27 0.08 -8.92 16 9 N -0.70 -8.55 4.79 -54.88 -0.26 -8.81 16 10 C 0.15 1.68 2.81 -67.93 -0.19 1.49 16 11 H 0.09 1.13 7.58 -51.93 -0.39 0.74 16 12 C -0.16 -1.51 9.48 37.16 0.35 -1.15 16 13 C 0.05 0.54 5.24 -3.83 -0.02 0.52 16 14 N -0.67 -10.28 5.85 -115.06 -0.67 -10.95 16 15 C 0.05 0.86 6.17 -4.97 -0.03 0.83 16 16 C 0.44 10.34 7.82 -10.98 -0.09 10.26 16 17 O -0.58 -15.84 15.78 5.54 0.09 -15.76 16 18 N -0.56 -14.31 5.29 -10.96 -0.06 -14.37 16 19 C -0.30 -8.34 9.68 -14.94 -0.14 -8.49 16 20 H 0.10 3.04 7.16 -52.48 -0.38 2.67 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.63 13.05 55.50 0.72 -23.90 16 23 Si 0.93 21.21 29.55 -169.99 -5.02 16.19 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 C 0.15 1.81 7.01 -81.60 -0.57 1.24 16 28 C -0.10 -0.88 9.57 36.01 0.34 -0.54 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.33 8.14 -51.92 -0.42 -0.09 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.09 0.42 7.02 -51.93 -0.36 0.05 16 34 H 0.19 1.90 7.50 -52.49 -0.39 1.51 16 35 H 0.40 4.50 7.56 -40.82 -0.31 4.19 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.35 5.96 8.43 -39.29 -0.33 5.63 16 42 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 44 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 45 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 46 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 47 H 0.07 0.41 7.05 -51.93 -0.37 0.04 16 48 H 0.11 1.12 6.50 -51.93 -0.34 0.78 16 LS Contribution 404.78 15.07 6.10 6.10 Total: -1.00 -35.12 404.78 -7.27 -42.39 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: -7.40 Total: 16.34 kcal Atomic # 6 Polarization: 10.46 SS G_CDS: -1.03 Total: 9.43 kcal Atomic # 7 Polarization: -65.69 SS G_CDS: -0.09 Total: -65.78 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: 0.16 Total: -24.68 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.12 -7.27 -42.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569088122.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.010 kcal (2) G-P(sol) polarization free energy of solvation -35.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds