Wall clock time and date at job start Tue Mar 31 2020 20:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.47495 * 2 1 4 4 C 1.35400 * 126.44236 * 265.02751 * 3 2 1 5 5 C 1.35556 * 107.15970 * 180.22786 * 4 3 2 6 6 N 1.33107 * 108.35378 * 359.63227 * 5 4 3 7 7 C 1.31620 * 109.08842 * 0.37343 * 6 5 4 8 8 C 1.47403 * 125.85896 * 179.80416 * 7 6 5 9 9 O 1.21609 * 120.00133 * 179.97438 * 8 7 6 10 10 N 1.34781 * 120.00318 * 359.96148 * 8 7 6 11 11 C 1.46502 * 120.00092 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.46940 * 34.99836 * 11 10 8 13 13 C 1.53001 * 109.46978 * 274.99980 * 11 10 8 14 14 C 1.52990 * 109.47095 * 155.00280 * 11 10 8 15 15 N 1.46906 * 109.47355 * 304.99783 * 14 11 10 16 16 C 1.46906 * 110.99672 * 293.96037 * 15 14 11 17 17 C 1.46892 * 111.00574 * 170.00180 * 15 14 11 18 18 C 1.50697 * 109.47396 * 190.00189 * 17 15 14 19 19 O 1.21289 * 119.99908 * 359.97438 * 18 17 15 20 20 N 1.34779 * 120.00191 * 179.97438 * 18 17 15 21 21 C 1.37094 * 120.00285 * 179.97438 * 20 18 17 22 22 H 1.08000 * 119.99684 * 0.02562 * 21 20 18 23 23 C 1.38950 * 120.00305 * 180.02562 * 21 20 18 24 24 N 1.31412 * 119.99869 * 180.02562 * 23 21 20 25 25 Si 1.86794 * 119.99964 * 359.97438 * 23 21 20 26 26 H 1.48508 * 109.47064 * 90.00092 * 25 23 21 27 27 H 1.48491 * 109.47262 * 210.00353 * 25 23 21 28 28 H 1.48503 * 109.47142 * 330.00427 * 25 23 21 29 29 H 1.08998 * 109.47939 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47058 * 299.99966 * 1 2 3 31 31 H 1.09000 * 109.47054 * 59.98900 * 1 2 3 32 32 H 1.09003 * 109.47058 * 240.00034 * 2 1 3 33 33 H 1.09000 * 109.47054 * 120.01100 * 2 1 3 34 34 H 1.08002 * 126.41646 * 359.96031 * 4 3 2 35 35 H 1.08002 * 125.82375 * 179.73554 * 5 4 3 36 36 H 0.96997 * 119.99584 * 0.02562 * 10 8 7 37 37 H 1.08999 * 109.47071 * 300.00257 * 13 11 10 38 38 H 1.09001 * 109.47461 * 59.99962 * 13 11 10 39 39 H 1.08995 * 109.47318 * 180.02562 * 13 11 10 40 40 H 1.09002 * 109.47608 * 64.99856 * 14 11 10 41 41 H 1.09001 * 109.47653 * 185.00013 * 14 11 10 42 42 H 1.08996 * 109.47414 * 59.99358 * 16 15 14 43 43 H 1.09002 * 109.46712 * 180.02562 * 16 15 14 44 44 H 1.09005 * 109.46571 * 299.99400 * 16 15 14 45 45 H 1.09006 * 109.47231 * 309.99946 * 17 15 14 46 46 H 1.09003 * 109.47265 * 69.99578 * 17 15 14 47 47 H 0.96998 * 119.99843 * 359.97438 * 20 18 17 48 48 H 0.97000 * 119.99788 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3755 2.1080 -1.0851 5 6 2.7704 3.3255 -0.6387 6 7 2.6497 3.3453 0.6867 7 6 2.1992 2.1781 1.0954 8 6 1.9343 1.7964 2.4943 9 8 1.5166 0.6839 2.7524 10 7 2.1554 2.6804 3.4875 11 6 1.8927 2.3008 4.8779 12 1 2.1346 1.2474 5.0188 13 6 0.4148 2.5322 5.1992 14 6 2.7566 3.1517 5.8107 15 7 4.1682 3.0221 5.4249 16 6 4.6523 1.6537 5.6514 17 6 5.0009 3.9999 6.1379 18 6 6.3863 4.0070 5.5450 19 8 6.6539 3.2698 4.6199 20 7 7.3281 4.8327 6.0429 21 6 8.5886 4.8389 5.5039 22 1 8.8269 4.1824 4.6801 23 6 9.5597 5.6897 6.0175 24 7 10.7679 5.6959 5.5005 25 14 9.1475 6.8257 7.4418 26 1 9.4298 6.1333 8.7249 27 1 9.9754 8.0550 7.3502 28 1 7.7095 7.1918 7.3829 29 1 -0.3635 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5140 0.8899 34 1 2.3543 1.7778 -2.1132 35 1 3.1213 4.1410 -1.2538 36 1 2.4884 3.5678 3.2816 37 1 0.1730 3.5857 5.0582 38 1 -0.2008 1.9261 4.5346 39 1 0.2194 2.2503 6.2337 40 1 2.4537 4.1961 5.7347 41 1 2.6279 2.8100 6.8377 42 1 4.0619 0.9564 5.0570 43 1 5.6998 1.5857 5.3579 44 1 4.5544 1.4040 6.7079 45 1 4.5594 4.9919 6.0417 46 1 5.0581 3.7284 7.1920 47 1 7.1140 5.4226 6.7825 48 1 11.4459 6.2896 5.8592 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569114194.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:39 Heat of formation + Delta-G solvation = 6.575654 kcal Electronic energy + Delta-G solvation = -29699.372980 eV Core-core repulsion = 25598.185660 eV Total energy + Delta-G solvation = -4101.187320 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.34254 -39.65163 -38.66072 -37.04610 -35.36904 -34.59460 -33.77624 -31.64966 -31.52173 -30.41142 -29.36304 -28.16323 -26.95564 -24.84426 -24.42246 -23.47052 -22.33383 -21.52748 -20.42265 -20.02536 -19.30025 -18.22480 -17.89465 -16.59064 -16.29800 -16.08319 -15.71594 -15.29129 -14.99805 -14.88052 -14.72989 -14.41445 -14.12286 -14.03163 -13.91587 -13.61608 -13.48593 -13.22335 -12.87391 -12.86566 -12.59058 -12.37800 -12.32480 -12.13795 -11.98345 -11.81445 -11.60806 -11.44477 -11.33202 -10.99706 -10.77839 -10.56827 -10.28217 -10.12767 -9.94047 -9.89617 -9.49780 -9.12179 -8.58787 -8.53202 -8.14178 -7.93866 -6.27353 -3.78409 1.33518 2.33116 2.58062 3.05073 3.08783 3.17179 3.23976 3.46682 3.78680 3.89598 4.13370 4.34009 4.42203 4.63023 4.70238 4.72354 4.82284 4.98874 5.04699 5.15644 5.18179 5.25288 5.27276 5.36613 5.37405 5.45806 5.51320 5.55041 5.60841 5.66100 5.76979 5.84975 5.87932 5.90391 5.99783 6.03867 6.10062 6.44802 6.53870 6.55346 6.82166 7.16323 7.29746 7.44807 7.62490 7.84636 8.18272 8.19049 8.64562 8.99732 9.46700 9.88546 10.85963 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014363 B = 0.002717 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.009941 B =10301.401939 C =11509.826993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.096 3.904 3 N -0.415 5.415 4 C -0.034 4.034 5 C -0.026 4.026 6 N -0.439 5.439 7 C 0.143 3.857 8 C 0.611 3.389 9 O -0.552 6.552 10 N -0.678 5.678 11 C 0.149 3.851 12 H 0.090 0.910 13 C -0.162 4.162 14 C 0.042 3.958 15 N -0.514 5.514 16 C 0.021 3.979 17 C 0.043 3.957 18 C 0.454 3.546 19 O -0.556 6.556 20 N -0.593 5.593 21 C -0.302 4.302 22 H 0.119 0.881 23 C 0.040 3.960 24 N -0.883 5.883 25 Si 0.880 3.120 26 H -0.272 1.272 27 H -0.277 1.277 28 H -0.269 1.269 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.090 0.910 33 H 0.110 0.890 34 H 0.181 0.819 35 H 0.177 0.823 36 H 0.417 0.583 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.081 0.919 41 H 0.049 0.951 42 H 0.061 0.939 43 H 0.096 0.904 44 H 0.015 0.985 45 H 0.090 0.910 46 H 0.048 0.952 47 H 0.370 0.630 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.703 -7.047 -5.585 25.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.026 4.026 3 N -0.096 5.096 4 C -0.172 4.172 5 C -0.179 4.179 6 N -0.160 5.160 7 C -0.116 4.116 8 C 0.396 3.604 9 O -0.430 6.430 10 N -0.329 5.329 11 C 0.044 3.956 12 H 0.108 0.892 13 C -0.221 4.221 14 C -0.087 4.087 15 N -0.238 5.238 16 C -0.127 4.127 17 C -0.089 4.089 18 C 0.239 3.761 19 O -0.437 6.437 20 N -0.233 5.233 21 C -0.431 4.431 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.523 5.523 25 Si 0.706 3.294 26 H -0.198 1.198 27 H -0.202 1.202 28 H -0.195 1.195 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.109 0.891 33 H 0.128 0.872 34 H 0.198 0.802 35 H 0.194 0.806 36 H 0.254 0.746 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.100 0.900 41 H 0.067 0.933 42 H 0.079 0.921 43 H 0.114 0.886 44 H 0.034 0.966 45 H 0.108 0.892 46 H 0.066 0.934 47 H 0.202 0.798 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -23.432 -7.685 -5.924 25.361 hybrid contribution -0.077 0.676 1.187 1.369 sum -23.509 -7.009 -4.737 24.984 Atomic orbital electron populations 1.22052 0.93715 1.03228 1.02885 1.22092 0.96134 0.79018 1.05340 1.45245 1.45470 1.12774 1.06156 1.22885 1.07150 0.94140 0.93017 1.22443 1.06811 0.97616 0.91071 1.70250 1.14378 1.18823 1.12542 1.22652 1.10167 0.88530 0.90265 1.16387 0.77605 0.84359 0.82093 1.90760 1.47811 1.20748 1.83698 1.45461 1.64817 1.17453 1.05129 1.21017 0.94064 1.00457 0.80099 0.89176 1.22160 0.95542 1.02350 1.02011 1.22507 0.88954 1.00625 0.96571 1.61538 1.00150 1.04944 1.57176 1.22574 1.04041 0.88370 0.97710 1.21907 0.94182 0.97037 0.95730 1.19633 0.85564 0.84357 0.86526 1.90543 1.80869 1.42329 1.29965 1.42210 1.11434 1.36973 1.32640 1.19418 0.84215 1.22419 1.17028 0.86322 1.25033 0.95239 0.97819 0.98151 1.69624 1.02679 1.38604 1.41416 0.86672 0.78523 0.81309 0.82876 1.19753 1.20231 1.19468 0.90474 0.91390 0.92390 0.89127 0.87200 0.80217 0.80584 0.74582 0.92132 0.91869 0.91468 0.90040 0.93286 0.92070 0.88573 0.96636 0.89225 0.93359 0.79792 0.91682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 10.23 37.16 0.38 -0.87 16 2 C 0.10 0.86 6.18 -4.04 -0.02 0.83 16 3 N -0.42 -4.84 2.76 -114.59 -0.32 -5.16 16 4 C -0.03 -0.34 11.53 -16.94 -0.20 -0.53 16 5 C -0.03 -0.31 11.85 -17.96 -0.21 -0.53 16 6 N -0.44 -6.61 10.90 -11.26 -0.12 -6.73 16 7 C 0.14 2.07 7.78 -154.52 -1.20 0.86 16 8 C 0.61 8.90 7.78 -12.53 -0.10 8.80 16 9 O -0.55 -8.42 14.17 5.27 0.07 -8.35 16 10 N -0.68 -9.01 4.80 -54.89 -0.26 -9.27 16 11 C 0.15 1.69 2.35 -67.93 -0.16 1.53 16 12 H 0.09 1.15 6.23 -51.93 -0.32 0.83 16 13 C -0.16 -1.46 9.48 37.16 0.35 -1.11 16 14 C 0.04 0.48 4.52 -3.83 -0.02 0.46 16 15 N -0.51 -8.00 4.22 -244.37 -1.03 -9.03 16 16 C 0.02 0.34 8.96 60.07 0.54 0.87 16 17 C 0.04 0.71 5.45 -4.98 -0.03 0.68 16 18 C 0.45 10.30 7.47 -10.99 -0.08 10.22 16 19 O -0.56 -14.93 13.91 5.55 0.08 -14.85 16 20 N -0.59 -14.17 5.09 -10.97 -0.06 -14.22 16 21 C -0.30 -8.60 10.16 -14.93 -0.15 -8.75 16 22 H 0.12 3.88 7.39 -52.49 -0.39 3.49 16 23 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 24 N -0.88 -26.04 13.96 55.50 0.77 -25.27 16 25 Si 0.88 19.49 27.74 -169.99 -4.71 14.78 16 26 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 27 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 28 H -0.27 -5.42 6.52 56.52 0.37 -5.05 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.67 7.85 -51.93 -0.41 0.27 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.57 8.13 -51.93 -0.42 0.14 16 33 H 0.11 1.17 6.64 -51.93 -0.34 0.83 16 34 H 0.18 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.18 1.65 8.06 -52.49 -0.42 1.23 16 36 H 0.42 5.78 8.28 -40.82 -0.34 5.44 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.82 7.93 -51.93 -0.41 0.40 16 41 H 0.05 0.49 8.12 -51.93 -0.42 0.07 16 42 H 0.06 0.95 6.58 -51.93 -0.34 0.61 16 43 H 0.10 1.93 5.82 -51.93 -0.30 1.63 16 44 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 45 H 0.09 1.28 7.93 -51.93 -0.41 0.86 16 46 H 0.05 0.70 8.12 -51.93 -0.42 0.28 16 47 H 0.37 7.74 5.76 -40.82 -0.24 7.51 16 48 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 395.59 15.07 5.96 5.96 Total: -1.00 -35.55 395.59 -7.93 -43.48 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: -7.32 Total: 15.17 kcal Atomic # 6 Polarization: 14.48 SS G_CDS: -1.00 Total: 13.48 kcal Atomic # 7 Polarization: -68.66 SS G_CDS: -1.02 Total: -69.68 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: 0.15 Total: -23.20 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -4.71 Total: 14.78 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.55 -7.93 -43.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569114194.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.057 kcal (2) G-P(sol) polarization free energy of solvation -35.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds