Wall clock time and date at job start Tue Mar 31 2020 20:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.47495 * 2 1 4 4 C 1.35400 * 126.44236 * 265.02751 * 3 2 1 5 5 C 1.35556 * 107.15970 * 180.22786 * 4 3 2 6 6 N 1.33107 * 108.35378 * 359.63227 * 5 4 3 7 7 C 1.31620 * 109.08842 * 0.37343 * 6 5 4 8 8 C 1.47403 * 125.85896 * 179.80416 * 7 6 5 9 9 O 1.21609 * 120.00133 * 179.97438 * 8 7 6 10 10 N 1.34781 * 120.00318 * 359.96148 * 8 7 6 11 11 C 1.46502 * 120.00092 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.46940 * 34.99836 * 11 10 8 13 13 C 1.53001 * 109.46978 * 274.99980 * 11 10 8 14 14 C 1.52990 * 109.47095 * 155.00280 * 11 10 8 15 15 N 1.46906 * 109.47355 * 304.99783 * 14 11 10 16 16 C 1.46906 * 110.99672 * 293.96037 * 15 14 11 17 17 C 1.46892 * 111.00574 * 170.00180 * 15 14 11 18 18 C 1.50697 * 109.47396 * 190.00189 * 17 15 14 19 19 O 1.21289 * 119.99908 * 359.97438 * 18 17 15 20 20 N 1.34779 * 120.00191 * 179.97438 * 18 17 15 21 21 C 1.37094 * 120.00285 * 179.97438 * 20 18 17 22 22 H 1.08000 * 119.99684 * 0.02562 * 21 20 18 23 23 C 1.38950 * 120.00305 * 180.02562 * 21 20 18 24 24 N 1.31412 * 119.99869 * 180.02562 * 23 21 20 25 25 Si 1.86794 * 119.99964 * 359.97438 * 23 21 20 26 26 H 1.48508 * 109.47064 * 90.00092 * 25 23 21 27 27 H 1.48491 * 109.47262 * 210.00353 * 25 23 21 28 28 H 1.48503 * 109.47142 * 330.00427 * 25 23 21 29 29 H 1.08998 * 109.47939 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47058 * 299.99966 * 1 2 3 31 31 H 1.09000 * 109.47054 * 59.98900 * 1 2 3 32 32 H 1.09003 * 109.47058 * 240.00034 * 2 1 3 33 33 H 1.09000 * 109.47054 * 120.01100 * 2 1 3 34 34 H 1.08002 * 126.41646 * 359.96031 * 4 3 2 35 35 H 1.08002 * 125.82375 * 179.73554 * 5 4 3 36 36 H 0.96997 * 119.99584 * 0.02562 * 10 8 7 37 37 H 1.08999 * 109.47071 * 300.00257 * 13 11 10 38 38 H 1.09001 * 109.47461 * 59.99962 * 13 11 10 39 39 H 1.08995 * 109.47318 * 180.02562 * 13 11 10 40 40 H 1.09002 * 109.47608 * 64.99856 * 14 11 10 41 41 H 1.09001 * 109.47653 * 185.00013 * 14 11 10 42 42 H 1.08996 * 109.47414 * 59.99358 * 16 15 14 43 43 H 1.09002 * 109.46712 * 180.02562 * 16 15 14 44 44 H 1.09005 * 109.46571 * 299.99400 * 16 15 14 45 45 H 1.09006 * 109.47231 * 309.99946 * 17 15 14 46 46 H 1.09003 * 109.47265 * 69.99578 * 17 15 14 47 47 H 0.96998 * 119.99843 * 359.97438 * 20 18 17 48 48 H 0.97000 * 119.99788 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3755 2.1080 -1.0851 5 6 2.7704 3.3255 -0.6387 6 7 2.6497 3.3453 0.6867 7 6 2.1992 2.1781 1.0954 8 6 1.9343 1.7964 2.4943 9 8 1.5166 0.6839 2.7524 10 7 2.1554 2.6804 3.4875 11 6 1.8927 2.3008 4.8779 12 1 2.1346 1.2474 5.0188 13 6 0.4148 2.5322 5.1992 14 6 2.7566 3.1517 5.8107 15 7 4.1682 3.0221 5.4249 16 6 4.6523 1.6537 5.6514 17 6 5.0009 3.9999 6.1379 18 6 6.3863 4.0070 5.5450 19 8 6.6539 3.2698 4.6199 20 7 7.3281 4.8327 6.0429 21 6 8.5886 4.8389 5.5039 22 1 8.8269 4.1824 4.6801 23 6 9.5597 5.6897 6.0175 24 7 10.7679 5.6959 5.5005 25 14 9.1475 6.8257 7.4418 26 1 9.4298 6.1333 8.7249 27 1 9.9754 8.0550 7.3502 28 1 7.7095 7.1918 7.3829 29 1 -0.3635 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5140 0.8899 34 1 2.3543 1.7778 -2.1132 35 1 3.1213 4.1410 -1.2538 36 1 2.4884 3.5678 3.2816 37 1 0.1730 3.5857 5.0582 38 1 -0.2008 1.9261 4.5346 39 1 0.2194 2.2503 6.2337 40 1 2.4537 4.1961 5.7347 41 1 2.6279 2.8100 6.8377 42 1 4.0619 0.9564 5.0570 43 1 5.6998 1.5857 5.3579 44 1 4.5544 1.4040 6.7079 45 1 4.5594 4.9919 6.0417 46 1 5.0581 3.7284 7.1920 47 1 7.1140 5.4226 6.7825 48 1 11.4459 6.2896 5.8592 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569114194.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:38 Heat of formation + Delta-G solvation = -21.669631 kcal Electronic energy + Delta-G solvation = -29700.597787 eV Core-core repulsion = 25598.185660 eV Total energy + Delta-G solvation = -4102.412127 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.25077 -40.78258 -40.26144 -38.32571 -36.35804 -35.94594 -35.41544 -33.72768 -32.49005 -31.22442 -30.25490 -29.61424 -28.00658 -26.56631 -25.38699 -24.39816 -23.55111 -22.42954 -21.37237 -21.21704 -21.01622 -20.13961 -18.82924 -17.80599 -17.54933 -17.14982 -16.79710 -16.73019 -16.50456 -16.12635 -15.60439 -15.54885 -15.47310 -15.21617 -14.91330 -14.77075 -14.73822 -14.46672 -14.32348 -14.10676 -13.64197 -13.58801 -13.38102 -13.16597 -12.98911 -12.88587 -12.79850 -12.66635 -12.46090 -12.36829 -12.29998 -11.96733 -11.73777 -11.44242 -11.30591 -11.10824 -10.82041 -10.35057 -10.20491 -10.11801 -9.47814 -9.17921 -8.39115 -5.99567 0.37610 1.31344 1.37022 1.45990 1.47732 1.65828 2.00848 2.24955 2.31354 2.45278 2.63513 3.17455 3.25265 3.40792 3.73439 3.77512 3.87838 4.05189 4.09639 4.19738 4.31667 4.34015 4.40519 4.41402 4.46208 4.48370 4.54177 4.58235 4.70426 4.72548 4.78190 4.79789 4.82185 5.01255 5.13246 5.17113 5.25752 5.30226 5.49267 5.55563 5.68223 5.91379 5.96284 6.02507 6.19032 6.41492 6.63029 6.87863 6.92125 7.14604 7.43603 8.02692 8.78948 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014363 B = 0.002717 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.009941 B =10301.401939 C =11509.826993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.091 3.909 3 N -0.415 5.415 4 C -0.011 4.011 5 C -0.055 4.055 6 N -0.471 5.471 7 C 0.105 3.895 8 C 0.604 3.396 9 O -0.569 6.569 10 N -0.678 5.678 11 C 0.147 3.853 12 H 0.072 0.928 13 C -0.151 4.151 14 C 0.048 3.952 15 N -0.538 5.538 16 C 0.031 3.969 17 C 0.056 3.944 18 C 0.451 3.549 19 O -0.606 6.606 20 N -0.594 5.594 21 C -0.325 4.325 22 H 0.051 0.949 23 C -0.018 4.018 24 N -0.938 5.938 25 Si 0.967 3.033 26 H -0.258 1.258 27 H -0.276 1.276 28 H -0.229 1.229 29 H 0.096 0.904 30 H 0.039 0.961 31 H 0.069 0.931 32 H 0.125 0.875 33 H 0.087 0.913 34 H 0.227 0.773 35 H 0.196 0.804 36 H 0.413 0.587 37 H 0.071 0.929 38 H 0.046 0.954 39 H 0.089 0.911 40 H 0.104 0.896 41 H 0.077 0.923 42 H 0.059 0.941 43 H 0.048 0.952 44 H 0.040 0.960 45 H 0.124 0.876 46 H 0.082 0.918 47 H 0.389 0.611 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.666 -5.805 -3.979 27.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.030 4.030 3 N -0.096 5.096 4 C -0.149 4.149 5 C -0.208 4.208 6 N -0.193 5.193 7 C -0.153 4.153 8 C 0.388 3.612 9 O -0.449 6.449 10 N -0.327 5.327 11 C 0.042 3.958 12 H 0.090 0.910 13 C -0.210 4.210 14 C -0.080 4.080 15 N -0.262 5.262 16 C -0.117 4.117 17 C -0.075 4.075 18 C 0.238 3.762 19 O -0.490 6.490 20 N -0.236 5.236 21 C -0.454 4.454 22 H 0.070 0.930 23 C -0.216 4.216 24 N -0.579 5.579 25 Si 0.786 3.214 26 H -0.182 1.182 27 H -0.202 1.202 28 H -0.152 1.152 29 H 0.115 0.885 30 H 0.059 0.941 31 H 0.088 0.912 32 H 0.143 0.857 33 H 0.106 0.894 34 H 0.243 0.757 35 H 0.213 0.787 36 H 0.250 0.750 37 H 0.090 0.910 38 H 0.066 0.934 39 H 0.108 0.892 40 H 0.122 0.878 41 H 0.095 0.905 42 H 0.077 0.923 43 H 0.067 0.933 44 H 0.058 0.942 45 H 0.142 0.858 46 H 0.100 0.900 47 H 0.225 0.775 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -26.444 -6.457 -4.287 27.556 hybrid contribution 0.864 0.163 0.495 1.009 sum -25.580 -6.294 -3.792 26.614 Atomic orbital electron populations 1.21990 0.92687 1.04273 1.02039 1.22297 0.96957 0.77796 1.05921 1.45522 1.44710 1.13491 1.05890 1.23606 1.04049 0.92982 0.94312 1.22977 1.07869 0.99457 0.90459 1.70161 1.15096 1.19693 1.14331 1.22664 1.12384 0.89350 0.90908 1.16583 0.77548 0.84358 0.82673 1.90729 1.48838 1.21283 1.84077 1.45565 1.64377 1.16988 1.05801 1.21155 0.95781 0.99566 0.79259 0.90974 1.22070 0.93189 1.02805 1.02930 1.22599 0.85714 1.02032 0.97635 1.61416 1.02275 1.04122 1.58382 1.22330 1.01021 0.89342 0.98970 1.21845 0.89816 0.99196 0.96661 1.20990 0.87689 0.82185 0.85286 1.90538 1.82309 1.43901 1.32263 1.42029 1.10036 1.38125 1.33393 1.18967 0.87167 1.22665 1.16609 0.93038 1.26140 0.94342 0.99415 1.01725 1.69817 1.04340 1.39968 1.43761 0.85342 0.80536 0.77806 0.77681 1.18205 1.20169 1.15186 0.88482 0.94147 0.91165 0.85677 0.89441 0.75686 0.78705 0.75049 0.90989 0.93442 0.89186 0.87818 0.90521 0.92263 0.93299 0.94212 0.85770 0.89997 0.77506 0.91242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 10.23 71.98 0.74 -1.47 16 2 C 0.09 1.56 6.18 86.38 0.53 2.09 16 3 N -0.42 -9.51 2.76 -516.46 -1.42 -10.94 16 4 C -0.01 -0.19 11.53 83.52 0.96 0.77 16 5 C -0.05 -1.30 11.85 83.88 0.99 -0.31 16 6 N -0.47 -14.61 10.90 -189.53 -2.07 -16.67 16 7 C 0.11 3.13 7.78 136.28 1.06 4.19 16 8 C 0.60 18.35 7.78 86.66 0.67 19.02 16 9 O -0.57 -18.23 14.17 -4.06 -0.06 -18.28 16 10 N -0.68 -18.25 4.80 -445.82 -2.14 -20.38 16 11 C 0.15 3.17 2.35 44.99 0.11 3.27 16 12 H 0.07 1.83 6.23 -2.39 -0.01 1.81 16 13 C -0.15 -2.43 9.48 71.98 0.68 -1.75 16 14 C 0.05 0.93 4.52 86.30 0.39 1.32 16 15 N -0.54 -15.87 4.22 -927.04 -3.92 -19.79 16 16 C 0.03 1.02 8.96 127.69 1.14 2.16 16 17 C 0.06 1.67 5.45 85.56 0.47 2.13 16 18 C 0.45 20.56 7.47 87.66 0.66 21.21 16 19 O -0.61 -34.37 13.91 -3.06 -0.04 -34.41 16 20 N -0.59 -28.24 5.09 -306.99 -1.56 -29.81 16 21 C -0.32 -19.34 10.16 84.04 0.85 -18.49 16 22 H 0.05 3.68 7.39 -2.91 -0.02 3.66 16 23 C -0.02 -1.02 5.50 84.93 0.47 -0.56 16 24 N -0.94 -57.53 13.96 21.66 0.30 -57.23 16 25 Si 0.97 39.12 27.74 68.60 1.90 41.02 16 26 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 27 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 28 H -0.23 -7.71 6.52 99.48 0.65 -7.06 16 29 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.04 0.81 7.85 -2.39 -0.02 0.79 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.13 1.25 8.13 -2.39 -0.02 1.23 16 33 H 0.09 1.92 6.64 -2.39 -0.02 1.91 16 34 H 0.23 1.82 8.06 -2.91 -0.02 1.80 16 35 H 0.20 3.55 8.06 -2.91 -0.02 3.52 16 36 H 0.41 11.63 8.28 -92.71 -0.77 10.86 16 37 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.10 1.61 7.93 -2.39 -0.02 1.59 16 41 H 0.08 1.14 8.12 -2.39 -0.02 1.12 16 42 H 0.06 1.89 6.58 -2.39 -0.02 1.88 16 43 H 0.05 2.05 5.82 -2.39 -0.01 2.04 16 44 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 45 H 0.12 2.94 7.93 -2.38 -0.02 2.92 16 46 H 0.08 1.98 8.12 -2.39 -0.02 1.96 16 47 H 0.39 15.19 5.76 -92.71 -0.53 14.65 16 48 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -87.60 395.59 0.36 -87.24 By element: Atomic # 1 Polarization: 46.01 SS G_CDS: -0.37 Total: 45.64 kcal Atomic # 6 Polarization: 23.87 SS G_CDS: 9.73 Total: 33.60 kcal Atomic # 7 Polarization: -144.01 SS G_CDS: -10.80 Total: -154.82 kcal Atomic # 8 Polarization: -52.60 SS G_CDS: -0.10 Total: -52.70 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 1.90 Total: 41.02 kcal Total: -87.60 0.36 -87.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569114194.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.573 kcal (2) G-P(sol) polarization free energy of solvation -87.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds