Wall clock time and date at job start Tue Mar 31 2020 20:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46508 * 109.46905 * 2 1 4 4 C 1.35398 * 126.43622 * 265.02491 * 3 2 1 5 5 C 1.35564 * 107.15817 * 179.75451 * 4 3 2 6 6 N 1.33098 * 108.35200 * 0.24438 * 5 4 3 7 7 C 1.31617 * 109.09581 * 359.97438 * 6 5 4 8 8 C 1.47401 * 125.86874 * 180.02562 * 7 6 5 9 9 O 1.21598 * 120.00430 * 179.97438 * 8 7 6 10 10 N 1.34781 * 119.99884 * 359.97438 * 8 7 6 11 11 C 1.46499 * 120.00107 * 179.97438 * 10 8 7 12 12 H 1.08993 * 109.46984 * 324.99649 * 11 10 8 13 13 C 1.52998 * 109.47317 * 84.99941 * 11 10 8 14 14 C 1.53001 * 109.46964 * 205.00292 * 11 10 8 15 15 N 1.46892 * 109.47624 * 54.99571 * 14 11 10 16 16 C 1.46906 * 111.00039 * 66.04756 * 15 14 11 17 17 C 1.46902 * 111.00394 * 190.00167 * 15 14 11 18 18 C 1.50703 * 109.47455 * 170.00205 * 17 15 14 19 19 O 1.21294 * 119.99684 * 0.02562 * 18 17 15 20 20 N 1.34768 * 120.00066 * 179.97438 * 18 17 15 21 21 C 1.37099 * 119.99750 * 179.97438 * 20 18 17 22 22 H 1.07997 * 120.00546 * 0.02562 * 21 20 18 23 23 C 1.38958 * 120.00026 * 180.02562 * 21 20 18 24 24 N 1.31411 * 119.99698 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00325 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47089 * 59.99479 * 25 23 21 27 27 H 1.48497 * 109.47126 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.46825 * 300.00286 * 25 23 21 29 29 H 1.08998 * 109.47292 * 60.00324 * 1 2 3 30 30 H 1.09008 * 109.46666 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47175 * 299.99772 * 1 2 3 32 32 H 1.09000 * 109.47625 * 240.00041 * 2 1 3 33 33 H 1.08998 * 109.47292 * 119.99676 * 2 1 3 34 34 H 1.08002 * 126.42435 * 0.02574 * 4 3 2 35 35 H 1.08001 * 125.82583 * 180.25796 * 5 4 3 36 36 H 0.97000 * 120.00118 * 359.97438 * 10 8 7 37 37 H 1.08995 * 109.46966 * 300.00184 * 13 11 10 38 38 H 1.09002 * 109.47037 * 59.99891 * 13 11 10 39 39 H 1.09001 * 109.47320 * 179.97438 * 13 11 10 40 40 H 1.08998 * 109.47127 * 175.00015 * 14 11 10 41 41 H 1.09010 * 109.46977 * 294.99386 * 14 11 10 42 42 H 1.09000 * 109.46852 * 60.00137 * 16 15 14 43 43 H 1.08994 * 109.47331 * 180.02562 * 16 15 14 44 44 H 1.09000 * 109.46963 * 300.00241 * 16 15 14 45 45 H 1.09004 * 109.46894 * 290.00249 * 17 15 14 46 46 H 1.09001 * 109.46860 * 49.99814 * 17 15 14 47 47 H 0.96998 * 120.00131 * 0.02562 * 20 18 17 48 48 H 0.96998 * 119.99907 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3754 2.1080 -1.0852 5 6 2.7601 3.3292 -0.6398 6 7 2.6461 3.3467 0.6862 7 6 2.2015 2.1776 1.0956 8 6 1.9406 1.7945 2.4948 9 8 1.5284 0.6802 2.7535 10 7 2.1591 2.6794 3.4877 11 6 1.8993 2.2989 4.8784 12 1 1.0367 1.6338 4.9180 13 6 3.1241 1.5803 5.4478 14 6 1.6139 3.5540 5.7057 15 7 0.5138 4.3072 5.0892 16 6 -0.7441 3.5513 5.1558 17 6 0.3669 5.6295 5.7122 18 6 -0.5948 6.4617 4.9039 19 8 -1.1079 5.9987 3.9071 20 7 -0.8856 7.7200 5.2891 21 6 -1.7602 8.4773 4.5534 22 1 -2.2164 8.0654 3.6654 23 6 -2.0596 9.7749 4.9502 24 7 -1.5049 10.2759 6.0310 25 14 -3.2518 10.8065 3.9483 26 1 -4.5735 10.1312 3.9027 27 1 -3.3997 12.1433 4.5778 28 1 -2.7293 10.9652 2.5673 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.3534 1.7782 -2.1134 35 1 3.1008 4.1483 -1.2558 36 1 2.4883 3.5682 3.2815 37 1 3.3273 0.6862 4.8584 38 1 3.9867 2.2454 5.4082 39 1 2.9310 1.2976 6.4827 40 1 1.3338 3.2654 6.7187 41 1 2.5072 4.1778 5.7395 42 1 -0.9956 3.3556 6.1982 43 1 -1.5417 4.1315 4.6921 44 1 -0.6282 2.6056 4.6263 45 1 -0.0166 5.5129 6.7259 46 1 1.3372 6.1251 5.7456 47 1 -0.4756 8.0901 6.0864 48 1 -1.7142 11.1816 6.3083 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569114195.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:41 Heat of formation + Delta-G solvation = -0.630538 kcal Electronic energy + Delta-G solvation = -29726.500789 eV Core-core repulsion = 25625.000985 eV Total energy + Delta-G solvation = -4101.499804 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.33301 -39.60657 -38.50273 -36.93993 -35.33168 -34.53648 -33.71283 -31.50768 -31.18569 -30.36935 -29.34295 -27.95932 -26.88778 -24.85140 -24.42289 -23.47360 -22.36425 -21.51715 -20.37309 -20.00418 -19.09684 -17.90789 -17.77776 -16.59776 -16.23528 -15.88350 -15.85834 -15.21589 -14.95500 -14.67614 -14.61404 -14.31678 -14.09364 -14.02430 -13.88275 -13.57342 -13.51218 -13.35651 -12.84821 -12.82532 -12.51104 -12.28281 -12.08648 -11.99453 -11.79788 -11.57227 -11.47182 -11.32237 -11.20139 -10.87372 -10.71393 -10.40945 -10.25994 -10.17245 -10.11367 -9.88000 -9.42275 -9.08893 -8.57527 -8.40399 -7.93312 -7.81737 -6.37592 -3.77989 1.34727 2.34191 2.59502 3.23105 3.27210 3.28278 3.33003 3.48004 3.95055 3.98499 4.26559 4.36712 4.43617 4.65226 4.76754 4.77330 5.01539 5.07141 5.14455 5.19297 5.21966 5.29680 5.31441 5.41449 5.45055 5.54321 5.54560 5.60382 5.74890 5.76302 5.88698 5.91574 5.98341 6.02940 6.08552 6.11460 6.32867 6.48207 6.55367 6.60950 6.83072 7.28310 7.39355 7.47685 7.59195 7.86394 8.10904 8.20918 8.66914 9.22866 9.59454 10.11952 10.80278 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011909 B = 0.002822 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.660861 B = 9919.812235 C =11282.556413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.097 3.903 3 N -0.416 5.416 4 C -0.035 4.035 5 C -0.026 4.026 6 N -0.439 5.439 7 C 0.144 3.856 8 C 0.611 3.389 9 O -0.553 6.553 10 N -0.678 5.678 11 C 0.149 3.851 12 H 0.090 0.910 13 C -0.162 4.162 14 C 0.042 3.958 15 N -0.514 5.514 16 C 0.022 3.978 17 C 0.046 3.954 18 C 0.445 3.555 19 O -0.575 6.575 20 N -0.565 5.565 21 C -0.297 4.297 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.903 5.903 25 Si 0.930 3.070 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.273 1.273 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.109 0.891 34 H 0.180 0.820 35 H 0.177 0.823 36 H 0.417 0.583 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.049 0.951 41 H 0.081 0.919 42 H 0.014 0.986 43 H 0.095 0.905 44 H 0.059 0.941 45 H 0.047 0.953 46 H 0.088 0.912 47 H 0.391 0.609 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.625 -19.366 -6.171 22.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.024 4.024 3 N -0.097 5.097 4 C -0.173 4.173 5 C -0.180 4.180 6 N -0.160 5.160 7 C -0.116 4.116 8 C 0.395 3.605 9 O -0.431 6.431 10 N -0.328 5.328 11 C 0.044 3.956 12 H 0.108 0.892 13 C -0.221 4.221 14 C -0.087 4.087 15 N -0.238 5.238 16 C -0.126 4.126 17 C -0.086 4.086 18 C 0.230 3.770 19 O -0.458 6.458 20 N -0.202 5.202 21 C -0.427 4.427 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.545 5.545 25 Si 0.757 3.243 26 H -0.200 1.200 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.107 0.893 33 H 0.127 0.873 34 H 0.198 0.802 35 H 0.194 0.806 36 H 0.254 0.746 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.067 0.933 41 H 0.099 0.901 42 H 0.033 0.967 43 H 0.114 0.886 44 H 0.077 0.923 45 H 0.065 0.935 46 H 0.106 0.894 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.170 -19.719 -6.451 23.106 hybrid contribution -0.578 0.595 0.092 0.835 sum 9.591 -19.125 -6.359 22.320 Atomic orbital electron populations 1.22071 0.93514 1.03234 1.03341 1.22088 0.96403 0.78908 1.05011 1.45267 1.45352 1.12888 1.06174 1.22879 1.07197 0.94210 0.92985 1.22439 1.07166 0.97261 0.91116 1.70248 1.15043 1.18070 1.12618 1.22670 1.10190 0.88406 0.90286 1.16385 0.77560 0.84531 0.82023 1.90755 1.47720 1.20893 1.83705 1.45468 1.65128 1.16949 1.05216 1.21024 0.98469 0.96097 0.80045 0.89231 1.22160 0.97819 1.00914 1.01170 1.22504 0.95929 0.94639 0.95614 1.61547 1.05200 1.01979 1.55056 1.22552 0.92866 0.98554 0.98609 1.21876 1.00507 0.90330 0.95846 1.19727 0.86228 0.83247 0.87779 1.90500 1.55719 1.71754 1.27872 1.41849 1.40818 1.11347 1.26218 1.19641 1.20116 0.94479 1.08459 0.88033 1.25240 0.98590 0.97320 0.96781 1.69603 1.44027 1.17074 1.23800 0.85936 0.80393 0.78440 0.79562 1.19981 1.21019 1.19886 0.92247 0.90490 0.91107 0.89252 0.87328 0.80244 0.80615 0.74572 0.91911 0.92113 0.91458 0.93339 0.90050 0.96742 0.88633 0.92271 0.93493 0.89357 0.77546 0.91890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 10.24 37.16 0.38 -1.13 16 2 C 0.10 0.88 6.19 -4.04 -0.02 0.86 16 3 N -0.42 -4.88 2.76 -114.58 -0.32 -5.19 16 4 C -0.03 -0.35 11.53 -16.93 -0.20 -0.54 16 5 C -0.03 -0.32 11.85 -17.96 -0.21 -0.53 16 6 N -0.44 -6.66 10.89 -11.26 -0.12 -6.79 16 7 C 0.14 2.10 7.79 -154.52 -1.20 0.89 16 8 C 0.61 9.05 7.78 -12.53 -0.10 8.95 16 9 O -0.55 -8.56 14.21 5.28 0.08 -8.49 16 10 N -0.68 -9.27 4.80 -54.89 -0.26 -9.53 16 11 C 0.15 1.77 2.35 -67.93 -0.16 1.61 16 12 H 0.09 1.19 6.23 -51.93 -0.32 0.87 16 13 C -0.16 -1.54 9.48 37.16 0.35 -1.19 16 14 C 0.04 0.51 4.52 -3.83 -0.02 0.49 16 15 N -0.51 -8.40 4.22 -244.36 -1.03 -9.43 16 16 C 0.02 0.37 8.96 60.07 0.54 0.91 16 17 C 0.05 0.81 5.45 -4.97 -0.03 0.78 16 18 C 0.44 10.53 7.48 -10.99 -0.08 10.45 16 19 O -0.57 -15.62 13.91 5.54 0.08 -15.55 16 20 N -0.57 -14.41 5.29 -10.96 -0.06 -14.47 16 21 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 22 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 23 C 0.02 0.60 5.50 -17.46 -0.10 0.50 16 24 N -0.90 -24.77 13.05 55.50 0.72 -24.05 16 25 Si 0.93 21.33 29.55 -169.99 -5.02 16.30 16 26 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 28 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.55 8.14 -51.92 -0.42 0.12 16 31 H 0.07 0.87 7.89 -51.93 -0.41 0.46 16 32 H 0.09 0.53 8.13 -51.93 -0.42 0.11 16 33 H 0.11 1.10 6.62 -51.93 -0.34 0.75 16 34 H 0.18 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.18 1.65 8.06 -52.49 -0.42 1.23 16 36 H 0.42 5.97 8.28 -40.82 -0.34 5.63 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.05 0.52 8.12 -51.93 -0.42 0.10 16 41 H 0.08 0.89 7.93 -51.92 -0.41 0.47 16 42 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 43 H 0.10 1.97 5.82 -51.93 -0.30 1.67 16 44 H 0.06 0.95 6.58 -51.93 -0.34 0.61 16 45 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 46 H 0.09 1.39 7.93 -51.93 -0.41 0.98 16 47 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 48 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 398.78 15.07 6.01 6.01 Total: -1.00 -34.13 398.78 -8.28 -42.42 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: -7.36 Total: 15.23 kcal Atomic # 6 Polarization: 14.52 SS G_CDS: -0.99 Total: 13.53 kcal Atomic # 7 Polarization: -68.39 SS G_CDS: -1.07 Total: -69.45 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: 0.15 Total: -24.03 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.13 -8.28 -42.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569114195.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.786 kcal (2) G-P(sol) polarization free energy of solvation -34.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds