Wall clock time and date at job start Tue Mar 31 2020 20:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46508 * 109.46905 * 2 1 4 4 C 1.35398 * 126.43622 * 265.02491 * 3 2 1 5 5 C 1.35564 * 107.15817 * 179.75451 * 4 3 2 6 6 N 1.33098 * 108.35200 * 0.24438 * 5 4 3 7 7 C 1.31617 * 109.09581 * 359.97438 * 6 5 4 8 8 C 1.47401 * 125.86874 * 180.02562 * 7 6 5 9 9 O 1.21598 * 120.00430 * 179.97438 * 8 7 6 10 10 N 1.34781 * 119.99884 * 359.97438 * 8 7 6 11 11 C 1.46499 * 120.00107 * 179.97438 * 10 8 7 12 12 H 1.08993 * 109.46984 * 324.99649 * 11 10 8 13 13 C 1.52998 * 109.47317 * 84.99941 * 11 10 8 14 14 C 1.53001 * 109.46964 * 205.00292 * 11 10 8 15 15 N 1.46892 * 109.47624 * 54.99571 * 14 11 10 16 16 C 1.46906 * 111.00039 * 66.04756 * 15 14 11 17 17 C 1.46902 * 111.00394 * 190.00167 * 15 14 11 18 18 C 1.50703 * 109.47455 * 170.00205 * 17 15 14 19 19 O 1.21294 * 119.99684 * 0.02562 * 18 17 15 20 20 N 1.34768 * 120.00066 * 179.97438 * 18 17 15 21 21 C 1.37099 * 119.99750 * 179.97438 * 20 18 17 22 22 H 1.07997 * 120.00546 * 0.02562 * 21 20 18 23 23 C 1.38958 * 120.00026 * 180.02562 * 21 20 18 24 24 N 1.31411 * 119.99698 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00325 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47089 * 59.99479 * 25 23 21 27 27 H 1.48497 * 109.47126 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.46825 * 300.00286 * 25 23 21 29 29 H 1.08998 * 109.47292 * 60.00324 * 1 2 3 30 30 H 1.09008 * 109.46666 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47175 * 299.99772 * 1 2 3 32 32 H 1.09000 * 109.47625 * 240.00041 * 2 1 3 33 33 H 1.08998 * 109.47292 * 119.99676 * 2 1 3 34 34 H 1.08002 * 126.42435 * 0.02574 * 4 3 2 35 35 H 1.08001 * 125.82583 * 180.25796 * 5 4 3 36 36 H 0.97000 * 120.00118 * 359.97438 * 10 8 7 37 37 H 1.08995 * 109.46966 * 300.00184 * 13 11 10 38 38 H 1.09002 * 109.47037 * 59.99891 * 13 11 10 39 39 H 1.09001 * 109.47320 * 179.97438 * 13 11 10 40 40 H 1.08998 * 109.47127 * 175.00015 * 14 11 10 41 41 H 1.09010 * 109.46977 * 294.99386 * 14 11 10 42 42 H 1.09000 * 109.46852 * 60.00137 * 16 15 14 43 43 H 1.08994 * 109.47331 * 180.02562 * 16 15 14 44 44 H 1.09000 * 109.46963 * 300.00241 * 16 15 14 45 45 H 1.09004 * 109.46894 * 290.00249 * 17 15 14 46 46 H 1.09001 * 109.46860 * 49.99814 * 17 15 14 47 47 H 0.96998 * 120.00131 * 0.02562 * 20 18 17 48 48 H 0.96998 * 119.99907 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3754 2.1080 -1.0852 5 6 2.7601 3.3292 -0.6398 6 7 2.6461 3.3467 0.6862 7 6 2.2015 2.1776 1.0956 8 6 1.9406 1.7945 2.4948 9 8 1.5284 0.6802 2.7535 10 7 2.1591 2.6794 3.4877 11 6 1.8993 2.2989 4.8784 12 1 1.0367 1.6338 4.9180 13 6 3.1241 1.5803 5.4478 14 6 1.6139 3.5540 5.7057 15 7 0.5138 4.3072 5.0892 16 6 -0.7441 3.5513 5.1558 17 6 0.3669 5.6295 5.7122 18 6 -0.5948 6.4617 4.9039 19 8 -1.1079 5.9987 3.9071 20 7 -0.8856 7.7200 5.2891 21 6 -1.7602 8.4773 4.5534 22 1 -2.2164 8.0654 3.6654 23 6 -2.0596 9.7749 4.9502 24 7 -1.5049 10.2759 6.0310 25 14 -3.2518 10.8065 3.9483 26 1 -4.5735 10.1312 3.9027 27 1 -3.3997 12.1433 4.5778 28 1 -2.7293 10.9652 2.5673 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.3534 1.7782 -2.1134 35 1 3.1008 4.1483 -1.2558 36 1 2.4883 3.5682 3.2815 37 1 3.3273 0.6862 4.8584 38 1 3.9867 2.2454 5.4082 39 1 2.9310 1.2976 6.4827 40 1 1.3338 3.2654 6.7187 41 1 2.5072 4.1778 5.7395 42 1 -0.9956 3.3556 6.1982 43 1 -1.5417 4.1315 4.6921 44 1 -0.6282 2.6056 4.6263 45 1 -0.0166 5.5129 6.7259 46 1 1.3372 6.1251 5.7456 47 1 -0.4756 8.0901 6.0864 48 1 -1.7142 11.1816 6.3083 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569114195.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:40 Heat of formation + Delta-G solvation = -26.195045 kcal Electronic energy + Delta-G solvation = -29727.609349 eV Core-core repulsion = 25625.000985 eV Total energy + Delta-G solvation = -4102.608364 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.24387 -40.74721 -40.16564 -38.29120 -36.34490 -35.91743 -35.39361 -33.25452 -32.48232 -31.22800 -30.24766 -29.47955 -28.00761 -26.65913 -25.39613 -24.43702 -23.60554 -22.42513 -21.37517 -21.01591 -20.94063 -19.83058 -18.82653 -17.81374 -17.58235 -16.99087 -16.84870 -16.56992 -16.52646 -16.18539 -15.71876 -15.54287 -15.38019 -15.23679 -15.04599 -14.83432 -14.72660 -14.42726 -14.14086 -13.64708 -13.63358 -13.50684 -13.33688 -13.12144 -13.02306 -12.87739 -12.78462 -12.65941 -12.44772 -12.39280 -12.33496 -12.12267 -11.74397 -11.43796 -11.29347 -11.10037 -10.81582 -10.26885 -10.11153 -9.97359 -9.47072 -9.18055 -8.44707 -5.92768 0.38050 1.39761 1.41092 1.47464 1.51953 1.67368 2.09815 2.28626 2.33506 2.45313 2.76627 3.22455 3.37629 3.46676 3.74537 3.77200 3.88400 4.04287 4.14921 4.21711 4.33199 4.33785 4.41264 4.42360 4.48162 4.53791 4.54733 4.59079 4.69977 4.71128 4.76946 4.78557 4.81631 5.00410 5.12931 5.16326 5.26357 5.29608 5.42333 5.48974 5.68989 5.88946 5.97088 6.07624 6.20641 6.41907 6.64087 6.88587 7.14866 7.16020 7.60264 8.17375 8.72620 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011909 B = 0.002822 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.660861 B = 9919.812235 C =11282.556413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.095 3.905 3 N -0.415 5.415 4 C -0.010 4.010 5 C -0.055 4.055 6 N -0.471 5.471 7 C 0.105 3.895 8 C 0.604 3.396 9 O -0.569 6.569 10 N -0.678 5.678 11 C 0.148 3.852 12 H 0.073 0.927 13 C -0.151 4.151 14 C 0.046 3.954 15 N -0.533 5.533 16 C 0.033 3.967 17 C 0.059 3.941 18 C 0.441 3.559 19 O -0.615 6.615 20 N -0.575 5.575 21 C -0.332 4.332 22 H 0.075 0.925 23 C -0.012 4.012 24 N -0.921 5.921 25 Si 0.990 3.010 26 H -0.273 1.273 27 H -0.269 1.269 28 H -0.273 1.273 29 H 0.064 0.936 30 H 0.099 0.901 31 H 0.030 0.970 32 H 0.132 0.868 33 H 0.094 0.906 34 H 0.228 0.772 35 H 0.196 0.804 36 H 0.413 0.587 37 H 0.049 0.951 38 H 0.070 0.930 39 H 0.088 0.912 40 H 0.073 0.927 41 H 0.100 0.900 42 H 0.035 0.965 43 H 0.051 0.949 44 H 0.060 0.940 45 H 0.070 0.930 46 H 0.114 0.886 47 H 0.396 0.604 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.687 -20.061 -6.472 24.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.026 4.026 3 N -0.096 5.096 4 C -0.149 4.149 5 C -0.208 4.208 6 N -0.193 5.193 7 C -0.153 4.153 8 C 0.389 3.611 9 O -0.449 6.449 10 N -0.327 5.327 11 C 0.044 3.956 12 H 0.091 0.909 13 C -0.210 4.210 14 C -0.081 4.081 15 N -0.258 5.258 16 C -0.115 4.115 17 C -0.072 4.072 18 C 0.229 3.771 19 O -0.501 6.501 20 N -0.213 5.213 21 C -0.461 4.461 22 H 0.093 0.907 23 C -0.212 4.212 24 N -0.562 5.562 25 Si 0.814 3.186 26 H -0.198 1.198 27 H -0.194 1.194 28 H -0.198 1.198 29 H 0.083 0.917 30 H 0.118 0.882 31 H 0.050 0.950 32 H 0.149 0.851 33 H 0.113 0.887 34 H 0.244 0.756 35 H 0.213 0.787 36 H 0.249 0.751 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.107 0.893 40 H 0.091 0.909 41 H 0.118 0.882 42 H 0.053 0.947 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.088 0.912 46 H 0.132 0.868 47 H 0.230 0.770 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 11.250 -20.431 -6.702 24.267 hybrid contribution -0.891 0.748 0.107 1.168 sum 10.360 -19.683 -6.595 23.200 Atomic orbital electron populations 1.22029 0.93794 1.04184 1.01586 1.22290 0.96080 0.77796 1.06386 1.45536 1.44574 1.13628 1.05883 1.23618 1.03932 0.93023 0.94278 1.22982 1.08228 0.99119 0.90447 1.70160 1.15784 1.18881 1.14504 1.22632 1.12537 0.89255 0.90863 1.16586 0.77419 0.84514 0.82620 1.90724 1.48665 1.21433 1.84090 1.45565 1.64788 1.16525 1.05863 1.21127 0.99076 0.96002 0.79390 0.90892 1.22072 0.96848 1.00175 1.01910 1.22597 0.94852 0.94339 0.96333 1.61447 1.05892 1.01927 1.56488 1.22323 0.92133 0.97713 0.99365 1.21748 0.99853 0.90161 0.95431 1.20850 0.85949 0.82871 0.87476 1.90483 1.57222 1.72493 1.29918 1.41910 1.40988 1.12039 1.26355 1.19583 1.21973 0.95785 1.08793 0.90652 1.25984 0.99766 0.97724 0.97698 1.69660 1.44528 1.17567 1.24434 0.85039 0.78166 0.77312 0.78124 1.19831 1.19356 1.19846 0.91658 0.88228 0.95029 0.85052 0.88727 0.75594 0.78684 0.75088 0.93204 0.91052 0.89276 0.90876 0.88164 0.94655 0.93009 0.92137 0.91168 0.86776 0.77015 0.91341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 10.24 71.98 0.74 -2.08 16 2 C 0.09 1.59 6.19 86.38 0.53 2.12 16 3 N -0.42 -9.41 2.76 -516.42 -1.42 -10.84 16 4 C -0.01 -0.17 11.53 83.52 0.96 0.79 16 5 C -0.05 -1.29 11.85 83.88 0.99 -0.29 16 6 N -0.47 -14.65 10.89 -189.53 -2.06 -16.72 16 7 C 0.11 3.14 7.79 136.27 1.06 4.20 16 8 C 0.60 18.62 7.78 86.66 0.67 19.29 16 9 O -0.57 -18.40 14.21 -4.02 -0.06 -18.45 16 10 N -0.68 -18.95 4.80 -445.84 -2.14 -21.09 16 11 C 0.15 3.43 2.35 44.99 0.11 3.54 16 12 H 0.07 1.94 6.23 -2.39 -0.01 1.93 16 13 C -0.15 -2.64 9.48 71.98 0.68 -1.96 16 14 C 0.05 1.02 4.52 86.31 0.39 1.41 16 15 N -0.53 -17.06 4.22 -927.03 -3.92 -20.98 16 16 C 0.03 1.12 8.96 127.69 1.14 2.26 16 17 C 0.06 2.01 5.45 85.56 0.47 2.48 16 18 C 0.44 21.30 7.48 87.66 0.66 21.96 16 19 O -0.62 -34.91 13.91 -3.07 -0.04 -34.95 16 20 N -0.58 -29.91 5.29 -306.98 -1.62 -31.53 16 21 C -0.33 -19.20 9.68 84.04 0.81 -18.39 16 22 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 23 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 24 N -0.92 -50.25 13.05 21.67 0.28 -49.96 16 25 Si 0.99 43.79 29.55 68.60 2.03 45.81 16 26 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 27 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 28 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 29 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 31 H 0.03 0.80 7.89 -2.39 -0.02 0.79 16 32 H 0.13 1.09 8.13 -2.39 -0.02 1.08 16 33 H 0.09 1.89 6.62 -2.39 -0.02 1.87 16 34 H 0.23 1.70 8.06 -2.91 -0.02 1.68 16 35 H 0.20 3.48 8.06 -2.91 -0.02 3.46 16 36 H 0.41 12.13 8.28 -92.71 -0.77 11.37 16 37 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.07 1.32 8.12 -2.39 -0.02 1.30 16 41 H 0.10 1.88 7.93 -2.38 -0.02 1.86 16 42 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.05 2.23 5.82 -2.39 -0.01 2.22 16 44 H 0.06 2.00 6.58 -2.39 -0.02 1.99 16 45 H 0.07 2.10 8.12 -2.38 -0.02 2.08 16 46 H 0.11 3.33 7.93 -2.39 -0.02 3.32 16 47 H 0.40 19.45 7.90 -92.71 -0.73 18.72 16 48 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 Total: -1.00 -78.52 398.78 0.22 -78.30 By element: Atomic # 1 Polarization: 45.76 SS G_CDS: -0.51 Total: 45.25 kcal Atomic # 6 Polarization: 25.46 SS G_CDS: 9.69 Total: 35.15 kcal Atomic # 7 Polarization: -140.23 SS G_CDS: -10.88 Total: -151.11 kcal Atomic # 8 Polarization: -53.30 SS G_CDS: -0.10 Total: -53.40 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Total: -78.52 0.22 -78.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569114195.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.107 kcal (2) G-P(sol) polarization free energy of solvation -78.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds