Wall clock time and date at job start Tue Mar 31 2020 20:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47536 * 2 1 4 4 C 1.53002 * 109.47255 * 239.99823 * 2 1 3 5 5 N 1.46491 * 109.47305 * 185.00166 * 4 2 1 6 6 C 1.34773 * 120.00115 * 180.02562 * 5 4 2 7 7 O 1.21279 * 120.00062 * 359.97438 * 6 5 4 8 8 C 1.50709 * 120.00201 * 180.02562 * 6 5 4 9 9 N 1.46496 * 109.46894 * 180.02562 * 8 6 5 10 10 N 1.40321 * 126.32178 * 270.01654 * 9 8 6 11 11 C 1.28869 * 108.11574 * 180.51208 * 10 9 8 12 12 N 1.38007 * 108.82595 * 0.55201 * 11 10 9 13 13 C 1.34318 * 108.31938 * 358.30576 * 12 11 10 14 14 O 1.21818 * 126.33264 * 182.03724 * 13 12 11 15 15 C 1.46721 * 124.17878 * 177.60440 * 12 11 10 16 16 C 1.53287 * 108.65921 * 19.33034 * 15 12 11 17 17 C 1.53237 * 109.36156 * 308.21732 * 16 15 12 18 18 C 1.51118 * 127.45840 * 180.93719 * 11 10 9 19 19 N 1.46501 * 109.47357 * 119.99707 * 2 1 3 20 20 C 1.46508 * 119.99810 * 59.99709 * 19 2 1 21 21 C 1.36938 * 120.00529 * 240.00276 * 19 2 1 22 22 H 1.07999 * 119.99737 * 324.50680 * 21 19 2 23 23 C 1.38813 * 120.00105 * 144.50612 * 21 19 2 24 24 N 1.31621 * 119.99453 * 157.63869 * 23 21 19 25 25 Si 1.86792 * 120.00120 * 337.63601 * 23 21 19 26 26 H 1.48501 * 109.46937 * 95.57692 * 25 23 21 27 27 H 1.48503 * 109.47346 * 215.57338 * 25 23 21 28 28 H 1.48498 * 109.47129 * 335.57579 * 25 23 21 29 29 H 1.09000 * 109.47308 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47098 * 300.00488 * 1 2 3 31 31 H 1.08996 * 109.46835 * 59.99896 * 1 2 3 32 32 H 1.08999 * 109.46917 * 305.00168 * 4 2 1 33 33 H 1.08998 * 109.47168 * 64.99605 * 4 2 1 34 34 H 0.97001 * 120.00286 * 0.02562 * 5 4 2 35 35 H 1.08999 * 109.46928 * 299.99724 * 8 6 5 36 36 H 1.08997 * 109.47248 * 59.99847 * 8 6 5 37 37 H 1.08992 * 109.60464 * 259.57676 * 15 12 11 38 38 H 1.09002 * 109.60321 * 139.07682 * 15 12 11 39 39 H 1.09003 * 109.49063 * 188.25335 * 16 15 12 40 40 H 1.08997 * 109.49133 * 68.18159 * 16 15 12 41 41 H 1.09006 * 109.54304 * 310.86779 * 17 16 15 42 42 H 1.08994 * 109.62500 * 190.63669 * 17 16 15 43 43 H 1.09001 * 109.75616 * 317.33195 * 18 11 10 44 44 H 1.09004 * 109.75240 * 78.02245 * 18 11 10 45 45 H 1.08999 * 109.46729 * 87.82513 * 20 19 2 46 46 H 1.09001 * 109.46777 * 207.82924 * 20 19 2 47 47 H 1.08997 * 109.46940 * 327.82551 * 20 19 2 48 48 H 0.97002 * 119.99700 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8265 -1.1905 6 6 4.1730 -1.4284 -2.1911 7 8 3.5699 -1.8834 -3.1399 8 6 5.6749 -1.5371 -2.1305 9 7 6.1633 -2.2265 -3.3273 10 7 6.3467 -3.6100 -3.4728 11 6 6.7984 -3.8318 -4.6592 12 7 6.9364 -2.6258 -5.3158 13 6 6.5148 -1.6484 -4.4965 14 8 6.4612 -0.4600 -4.7586 15 6 7.4741 -2.4833 -6.6734 16 6 7.3862 -3.8404 -7.3807 17 6 8.0296 -4.9156 -6.4986 18 6 7.1296 -5.1684 -5.2816 19 7 2.0184 -0.6905 1.1962 20 6 1.6644 -2.0932 1.4281 21 6 2.8056 -0.0251 2.0976 22 1 3.5191 0.7088 1.7530 23 6 2.6866 -0.2937 3.4543 24 7 3.6839 -0.0213 4.2690 25 14 1.1113 -1.0416 4.1236 26 1 1.2647 -2.5156 4.2190 27 1 0.8327 -0.4848 5.4718 28 1 -0.0160 -0.7192 3.2123 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6054 -1.7198 -1.2951 33 1 1.7516 -0.1584 -2.1370 34 1 3.9823 -0.4629 -0.4316 35 1 6.1099 -0.5387 -2.0839 36 1 5.9629 -2.1006 -1.2431 37 1 8.5150 -2.1639 -6.6229 38 1 6.8890 -1.7459 -7.2230 39 1 7.9129 -3.7887 -8.3336 40 1 6.3403 -4.0920 -7.5561 41 1 9.0090 -4.5741 -6.1633 42 1 8.1405 -5.8382 -7.0682 43 1 7.6550 -5.7917 -4.5581 44 1 6.2122 -5.6649 -5.5979 45 1 2.3946 -2.7378 0.9389 46 1 1.6615 -2.2948 2.4993 47 1 0.6737 -2.2903 1.0187 48 1 3.6006 -0.2087 5.2171 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570745903.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:29 Heat of formation + Delta-G solvation = 9.351856 kcal Electronic energy + Delta-G solvation = -29882.935146 eV Core-core repulsion = 25781.868211 eV Total energy + Delta-G solvation = -4101.066935 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.66176 -40.81575 -38.87775 -38.59195 -37.77208 -35.48106 -34.51414 -33.96816 -33.53698 -31.92699 -30.05442 -29.21603 -28.06766 -26.97151 -25.33955 -24.88498 -23.64502 -22.92605 -21.53566 -20.97606 -20.68087 -18.99995 -18.57154 -18.48992 -17.62239 -17.54293 -17.34816 -16.97947 -16.50368 -16.35114 -15.86493 -15.58070 -15.25762 -15.18796 -15.03317 -14.94304 -14.42531 -14.28608 -14.22069 -14.09385 -13.98737 -13.79760 -13.36421 -13.13693 -13.00790 -12.90881 -12.83824 -12.61498 -12.30918 -12.07897 -12.01632 -11.88250 -11.84877 -11.62041 -11.57677 -11.48109 -11.34949 -10.78571 -10.61719 -10.07820 -9.67216 -8.82605 -8.16813 -5.52879 0.57812 0.93970 1.32600 1.44427 1.46629 1.47942 1.54004 1.94029 2.30275 2.44726 3.09363 3.20642 3.30562 3.56521 3.69586 3.75529 3.85050 3.91505 3.96565 4.09264 4.30622 4.34076 4.38436 4.43936 4.49312 4.52972 4.54692 4.66477 4.75387 4.78988 4.81908 4.88031 4.89627 4.94431 5.00052 5.02187 5.06652 5.17724 5.21822 5.33695 5.35668 5.50832 5.60442 5.94610 6.19490 6.48776 6.54451 6.85703 6.96719 7.12757 7.63530 8.06099 9.01885 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.021281 B = 0.002463 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.390079 B =11364.461228 C =11638.352147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.157 3.843 3 H 0.076 0.924 4 C 0.119 3.881 5 N -0.700 5.700 6 C 0.495 3.505 7 O -0.582 6.582 8 C 0.141 3.859 9 N -0.444 5.444 10 N -0.304 5.304 11 C 0.285 3.715 12 N -0.553 5.553 13 C 0.638 3.362 14 O -0.598 6.598 15 C 0.117 3.883 16 C -0.129 4.129 17 C -0.117 4.117 18 C -0.040 4.040 19 N -0.611 5.611 20 C 0.111 3.889 21 C -0.250 4.250 22 H 0.061 0.939 23 C -0.020 4.020 24 N -0.945 5.945 25 Si 0.940 3.060 26 H -0.284 1.284 27 H -0.317 1.317 28 H -0.257 1.257 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.078 0.922 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.414 0.586 35 H 0.136 0.864 36 H 0.146 0.854 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.123 0.877 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.120 0.880 43 H 0.123 0.877 44 H 0.116 0.884 45 H 0.019 0.981 46 H 0.027 0.973 47 H 0.055 0.945 48 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.412 -12.062 -23.740 27.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.051 3.949 3 H 0.094 0.906 4 C -0.007 4.007 5 N -0.351 5.351 6 C 0.280 3.720 7 O -0.462 6.462 8 C 0.016 3.984 9 N -0.262 5.262 10 N -0.126 5.126 11 C 0.007 3.993 12 N -0.281 5.281 13 C 0.337 3.663 14 O -0.475 6.475 15 C -0.003 4.003 16 C -0.167 4.167 17 C -0.155 4.155 18 C -0.080 4.080 19 N -0.336 5.336 20 C -0.034 4.034 21 C -0.380 4.380 22 H 0.078 0.922 23 C -0.216 4.216 24 N -0.589 5.589 25 Si 0.771 3.229 26 H -0.212 1.212 27 H -0.246 1.246 28 H -0.182 1.182 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.097 0.903 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.251 0.749 35 H 0.154 0.846 36 H 0.164 0.836 37 H 0.113 0.887 38 H 0.098 0.902 39 H 0.141 0.859 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.138 0.862 43 H 0.141 0.859 44 H 0.134 0.866 45 H 0.037 0.963 46 H 0.045 0.955 47 H 0.074 0.926 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.690 -11.883 -23.510 27.442 hybrid contribution -0.537 0.764 0.982 1.355 sum 7.153 -11.120 -22.528 26.121 Atomic orbital electron populations 1.22121 0.95398 1.01956 1.02026 1.20850 0.93822 0.95676 0.84562 0.90613 1.21799 0.79471 1.00614 0.98776 1.45837 1.08465 1.58012 1.22826 1.21215 0.90858 0.77595 0.82294 1.90645 1.70863 1.49740 1.34976 1.21353 0.90478 1.00228 0.86309 1.48442 1.60966 1.04046 1.12777 1.76771 1.23667 0.93801 1.18322 1.25396 0.94538 0.91624 0.87736 1.46313 1.58169 1.06226 1.17402 1.16819 0.81636 0.85517 0.82352 1.91011 1.64224 1.13386 1.78881 1.22221 0.99911 1.01640 0.76489 1.22030 1.03363 0.91096 1.00203 1.21761 0.98157 1.01030 0.94517 1.20901 1.03286 0.85367 0.98410 1.44218 1.59038 1.07081 1.23262 1.21300 0.98352 0.85395 0.98311 1.18742 1.12155 1.20621 0.86448 0.92157 1.25969 0.99059 0.99913 0.96704 1.69970 1.31550 1.52945 1.04474 0.85945 0.83588 0.77094 0.76282 1.21153 1.24621 1.18163 0.92669 0.93346 0.90331 0.92788 0.91367 0.74925 0.84632 0.83595 0.88664 0.90229 0.85885 0.90864 0.90376 0.86200 0.85870 0.86566 0.96285 0.95457 0.92618 0.93038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.78 9.17 71.98 0.66 -4.12 16 2 C 0.16 5.56 2.88 44.99 0.13 5.69 16 3 H 0.08 2.74 7.89 -2.39 -0.02 2.72 16 4 C 0.12 4.01 4.97 86.38 0.43 4.43 16 5 N -0.70 -24.07 5.39 -463.08 -2.49 -26.56 16 6 C 0.50 17.87 7.90 87.66 0.69 18.56 16 7 O -0.58 -25.14 16.43 -3.03 -0.05 -25.19 16 8 C 0.14 4.31 6.87 85.64 0.59 4.90 16 9 N -0.44 -14.65 3.12 -481.98 -1.50 -16.15 16 10 N -0.30 -8.85 12.51 -49.11 -0.61 -9.46 16 11 C 0.29 6.15 7.73 137.75 1.06 7.22 16 12 N -0.55 -13.49 3.13 -644.25 -2.02 -15.50 16 13 C 0.64 21.87 8.64 179.10 1.55 23.41 16 14 O -0.60 -24.33 17.83 -4.73 -0.08 -24.42 16 15 C 0.12 1.72 6.88 86.43 0.59 2.31 16 16 C -0.13 -0.74 5.94 30.77 0.18 -0.56 16 17 C -0.12 -0.39 5.96 30.83 0.18 -0.21 16 18 C -0.04 -0.36 6.32 30.14 0.19 -0.17 16 19 N -0.61 -26.09 1.88 -702.77 -1.32 -27.41 16 20 C 0.11 4.51 8.63 127.77 1.10 5.62 16 21 C -0.25 -12.87 9.58 84.03 0.81 -12.06 16 22 H 0.06 3.32 8.06 -2.91 -0.02 3.30 16 23 C -0.02 -1.09 5.31 84.86 0.45 -0.64 16 24 N -0.94 -56.50 13.97 21.65 0.30 -56.20 16 25 Si 0.94 45.01 24.94 68.60 1.71 46.72 16 26 H -0.28 -13.22 6.67 99.48 0.66 -12.55 16 27 H -0.32 -15.69 7.11 99.48 0.71 -14.98 16 28 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 29 H 0.05 1.63 6.67 -2.39 -0.02 1.62 16 30 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 31 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.05 1.89 7.84 -2.39 -0.02 1.88 16 33 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.41 14.30 7.89 -92.71 -0.73 13.57 16 35 H 0.14 3.72 8.12 -2.39 -0.02 3.70 16 36 H 0.15 3.79 8.14 -2.39 -0.02 3.77 16 37 H 0.10 1.11 8.14 -2.39 -0.02 1.10 16 38 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.12 0.03 8.14 -2.39 -0.02 0.01 16 40 H 0.07 0.54 8.10 -2.39 -0.02 0.52 16 41 H 0.08 0.27 8.11 -2.38 -0.02 0.25 16 42 H 0.12 -0.25 8.14 -2.39 -0.02 -0.27 16 43 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.12 0.79 8.14 -2.39 -0.02 0.78 16 45 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.03 1.22 3.10 -2.39 -0.01 1.21 16 47 H 0.06 1.99 6.43 -2.39 -0.02 1.97 16 48 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -82.21 386.93 2.75 -79.46 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: 0.20 Total: 20.33 kcal Atomic # 6 Polarization: 45.77 SS G_CDS: 8.62 Total: 54.39 kcal Atomic # 7 Polarization: -143.64 SS G_CDS: -7.65 Total: -151.29 kcal Atomic # 8 Polarization: -49.48 SS G_CDS: -0.13 Total: -49.61 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.71 Total: 46.72 kcal Total: -82.21 2.75 -79.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570745903.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.814 kcal (2) G-P(sol) polarization free energy of solvation -82.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds