Wall clock time and date at job start Tue Mar 31 2020 20:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46886 * 2 1 4 4 C 1.53001 * 109.46893 * 119.99728 * 2 1 3 5 5 N 1.46499 * 109.46898 * 175.00329 * 4 2 1 6 6 C 1.34776 * 119.99822 * 180.02562 * 5 4 2 7 7 O 1.21272 * 120.00169 * 359.97438 * 6 5 4 8 8 C 1.50711 * 119.99944 * 179.97438 * 6 5 4 9 9 N 1.46497 * 109.46985 * 179.97438 * 8 6 5 10 10 N 1.40313 * 126.32496 * 270.02566 * 9 8 6 11 11 C 1.28870 * 108.11807 * 180.51658 * 10 9 8 12 12 N 1.38010 * 108.82207 * 0.53928 * 11 10 9 13 13 C 1.34316 * 108.32203 * 358.31505 * 12 11 10 14 14 O 1.21815 * 126.33557 * 182.03554 * 13 12 11 15 15 C 1.46721 * 124.17761 * 177.61149 * 12 11 10 16 16 C 1.53291 * 108.65964 * 19.33305 * 15 12 11 17 17 C 1.53227 * 109.35990 * 308.21920 * 16 15 12 18 18 C 1.51117 * 127.46469 * 180.94386 * 11 10 9 19 19 N 1.46498 * 109.47288 * 239.99709 * 2 1 3 20 20 C 1.46498 * 120.00113 * 300.00167 * 19 2 1 21 21 C 1.36939 * 120.00059 * 120.00192 * 19 2 1 22 22 H 1.08000 * 119.99934 * 20.37424 * 21 19 2 23 23 C 1.38815 * 120.00192 * 200.37845 * 21 19 2 24 24 N 1.31616 * 120.00015 * 14.98517 * 23 21 19 25 25 Si 1.86795 * 119.99966 * 194.98745 * 23 21 19 26 26 H 1.48504 * 109.47263 * 85.00274 * 25 23 21 27 27 H 1.48505 * 109.47303 * 204.99740 * 25 23 21 28 28 H 1.48503 * 109.47495 * 325.00222 * 25 23 21 29 29 H 1.09003 * 109.46886 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46852 * 60.00635 * 1 2 3 31 31 H 1.08993 * 109.47814 * 300.00335 * 1 2 3 32 32 H 1.09000 * 109.47089 * 295.00159 * 4 2 1 33 33 H 1.08998 * 109.47298 * 55.00358 * 4 2 1 34 34 H 0.96999 * 120.00459 * 359.97438 * 5 4 2 35 35 H 1.09001 * 109.46731 * 300.00017 * 8 6 5 36 36 H 1.08998 * 109.46961 * 59.99720 * 8 6 5 37 37 H 1.08999 * 109.60699 * 259.58296 * 15 12 11 38 38 H 1.09005 * 109.60918 * 139.08376 * 15 12 11 39 39 H 1.09004 * 109.48728 * 188.25116 * 16 15 12 40 40 H 1.08998 * 109.48887 * 68.18581 * 16 15 12 41 41 H 1.09003 * 109.54959 * 310.86415 * 17 16 15 42 42 H 1.09002 * 109.62119 * 190.63482 * 17 16 15 43 43 H 1.09003 * 109.74651 * 317.31722 * 18 11 10 44 44 H 1.09001 * 109.75326 * 78.00547 * 18 11 10 45 45 H 1.08998 * 109.47547 * 95.10946 * 20 19 2 46 46 H 1.09003 * 109.47342 * 215.10909 * 20 19 2 47 47 H 1.09001 * 109.47010 * 335.10162 * 20 19 2 48 48 H 0.97001 * 120.00160 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.1729 -1.4290 2.1908 7 8 3.5698 -1.8840 3.1395 8 6 5.6749 -1.5376 2.1303 9 7 6.1631 -2.2281 3.3265 10 7 6.5329 -1.6280 4.5398 11 6 6.9183 -2.5572 5.3453 12 7 6.8285 -3.7729 4.6983 13 6 6.3349 -3.5606 3.4673 14 8 6.0895 -4.4120 2.6314 15 6 7.2324 -5.0533 5.2901 16 6 7.2870 -4.8940 6.8137 17 6 8.1461 -3.6752 7.1664 18 6 7.3898 -2.3994 6.7723 19 7 2.0183 -0.6907 -1.1961 20 6 1.6644 -2.0932 -1.4279 21 6 2.8057 -0.0252 -2.0975 22 1 3.3356 0.8665 -1.7967 23 6 2.9227 -0.4967 -3.3979 24 7 2.0697 -1.3896 -3.8534 25 14 4.2907 0.1360 -4.5012 26 1 5.5271 -0.6494 -4.2567 27 1 3.8864 -0.0074 -5.9229 28 1 4.5464 1.5678 -4.2013 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3634 0.5138 0.8899 32 1 1.7515 -0.1582 2.1370 33 1 1.6054 -1.7198 1.2952 34 1 3.9824 -0.4627 0.4317 35 1 5.9629 -2.1005 1.2424 36 1 6.1097 -0.5392 2.0845 37 1 8.2168 -5.3347 4.9162 38 1 6.5056 -5.8226 5.0287 39 1 7.7248 -5.7882 7.2574 40 1 6.2781 -4.7520 7.2009 41 1 9.0889 -3.7234 6.6214 42 1 8.3447 -3.6652 8.2382 43 1 8.0548 -1.5389 6.8474 44 1 6.5322 -2.2605 7.4305 45 1 0.7890 -2.1449 -2.0752 46 1 2.5001 -2.6047 -1.9057 47 1 1.4411 -2.5738 -0.4754 48 1 2.1517 -1.7194 -4.7619 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570745904.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:33 Heat of formation + Delta-G solvation = 30.840329 kcal Electronic energy + Delta-G solvation = -29930.560018 eV Core-core repulsion = 25830.424893 eV Total energy + Delta-G solvation = -4100.135124 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.61442 -39.33089 -37.77718 -36.94010 -36.61950 -33.77238 -33.63539 -32.66472 -31.96220 -29.48353 -29.12598 -28.11393 -26.01377 -25.67017 -24.31818 -23.01830 -22.91356 -21.79868 -20.10013 -20.00466 -19.30060 -17.41481 -17.33646 -16.91242 -16.42739 -16.19383 -15.89205 -15.34289 -15.18690 -14.74863 -14.68794 -14.63613 -14.55228 -13.98722 -13.65567 -13.62000 -13.08291 -12.84186 -12.72908 -12.51986 -12.27591 -12.13338 -12.02717 -11.75520 -11.58171 -11.46430 -11.43091 -11.40677 -11.07098 -10.82217 -10.75002 -10.39444 -10.37383 -10.27865 -10.18772 -9.87941 -9.77960 -9.49014 -8.59200 -8.52171 -8.48316 -6.82905 -5.74855 -3.20206 1.63353 1.86954 2.70493 2.84666 2.94895 3.36188 3.41824 3.44175 3.66739 3.97713 4.14265 4.22562 4.34412 4.45596 4.69258 4.85068 4.92120 5.05710 5.08238 5.19801 5.24011 5.27391 5.30299 5.37295 5.37777 5.41259 5.53235 5.60702 5.65898 5.82146 5.92504 6.07682 6.12089 6.19889 6.32405 6.44311 6.46201 6.76570 6.86653 6.88039 7.03860 7.41610 7.60757 7.70875 7.80110 7.96327 8.09124 8.35108 8.59759 9.19873 9.83909 10.32839 11.29563 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017272 B = 0.002632 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.755870 B =10634.584418 C =11267.646249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.158 3.842 3 H 0.069 0.931 4 C 0.109 3.891 5 N -0.701 5.701 6 C 0.493 3.507 7 O -0.545 6.545 8 C 0.142 3.858 9 N -0.435 5.435 10 N -0.267 5.267 11 C 0.272 3.728 12 N -0.557 5.557 13 C 0.656 3.344 14 O -0.550 6.550 15 C 0.131 3.869 16 C -0.137 4.137 17 C -0.124 4.124 18 C -0.038 4.038 19 N -0.594 5.594 20 C 0.165 3.835 21 C -0.263 4.263 22 H 0.070 0.930 23 C 0.004 3.996 24 N -0.902 5.902 25 Si 0.903 3.097 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.280 1.280 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.041 0.959 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.411 0.589 35 H 0.126 0.874 36 H 0.123 0.877 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.087 0.913 43 H 0.104 0.896 44 H 0.102 0.898 45 H 0.028 0.972 46 H 0.041 0.959 47 H -0.001 1.001 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.578 -2.700 22.928 26.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.049 3.951 3 H 0.087 0.913 4 C -0.017 4.017 5 N -0.353 5.353 6 C 0.277 3.723 7 O -0.422 6.422 8 C 0.017 3.983 9 N -0.254 5.254 10 N -0.089 5.089 11 C -0.007 4.007 12 N -0.287 5.287 13 C 0.356 3.644 14 O -0.423 6.423 15 C 0.009 3.991 16 C -0.175 4.175 17 C -0.162 4.162 18 C -0.078 4.078 19 N -0.317 5.317 20 C 0.020 3.980 21 C -0.392 4.392 22 H 0.088 0.912 23 C -0.195 4.195 24 N -0.546 5.546 25 Si 0.733 3.267 26 H -0.214 1.214 27 H -0.219 1.219 28 H -0.206 1.206 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.248 0.752 35 H 0.144 0.856 36 H 0.141 0.859 37 H 0.099 0.901 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.105 0.895 43 H 0.123 0.877 44 H 0.120 0.880 45 H 0.047 0.953 46 H 0.060 0.940 47 H 0.017 0.983 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 11.766 -2.716 22.566 25.594 hybrid contribution 0.762 -0.337 -1.255 1.506 sum 12.529 -3.053 21.312 24.909 Atomic orbital electron populations 1.22189 0.97485 1.01386 1.00566 1.20608 0.92605 0.95490 0.86357 0.91292 1.21955 0.79254 1.01288 0.99211 1.45794 1.08481 1.58232 1.22769 1.20753 0.89702 0.78675 0.83192 1.90674 1.69829 1.47940 1.33787 1.21264 0.92563 1.00083 0.84401 1.48285 1.61164 1.04761 1.11224 1.76698 1.19360 1.20950 0.91863 1.24210 0.98114 0.81318 0.97062 1.46019 1.59574 1.08809 1.14269 1.16464 0.81160 0.83908 0.82904 1.91101 1.58765 1.47214 1.45224 1.21767 1.01526 0.82472 0.93286 1.21984 1.01981 0.99793 0.93741 1.21714 0.98765 0.92951 1.02762 1.20471 1.01554 1.00225 0.85555 1.44015 1.58237 1.08093 1.21375 1.20728 0.99811 0.83307 0.94142 1.19202 1.19956 1.09692 0.90329 0.91191 1.24982 0.98461 0.99516 0.96526 1.70093 1.35112 1.33376 1.16058 0.86310 0.81993 0.78389 0.80016 1.21429 1.21856 1.20580 0.93179 0.92174 0.93984 0.92500 0.92168 0.75230 0.85639 0.85865 0.90085 0.89041 0.88948 0.90364 0.90725 0.89476 0.87727 0.88002 0.95342 0.93977 0.98295 0.93712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 9.19 37.16 0.34 -2.48 16 2 C 0.16 3.08 2.87 -67.93 -0.19 2.88 16 3 H 0.07 1.31 7.85 -51.93 -0.41 0.90 16 4 C 0.11 2.00 4.93 -4.04 -0.02 1.98 16 5 N -0.70 -12.42 5.39 -60.29 -0.32 -12.75 16 6 C 0.49 8.98 7.90 -10.98 -0.09 8.90 16 7 O -0.54 -11.89 16.43 5.56 0.09 -11.80 16 8 C 0.14 2.13 6.87 -5.19 -0.04 2.10 16 9 N -0.43 -7.08 3.12 -66.40 -0.21 -7.28 16 10 N -0.27 -3.81 12.51 33.12 0.41 -3.40 16 11 C 0.27 3.05 7.73 -153.76 -1.19 1.86 16 12 N -0.56 -7.04 3.13 -117.55 -0.37 -7.41 16 13 C 0.66 11.32 8.64 -87.04 -0.75 10.57 16 14 O -0.55 -11.36 17.83 5.09 0.09 -11.27 16 15 C 0.13 1.09 6.88 -3.77 -0.03 1.06 16 16 C -0.14 -0.63 5.94 -26.46 -0.16 -0.79 16 17 C -0.12 -0.45 5.96 -26.37 -0.16 -0.60 16 18 C -0.04 -0.22 6.32 -27.44 -0.17 -0.39 16 19 N -0.59 -13.97 2.29 -173.48 -0.40 -14.37 16 20 C 0.16 4.06 8.00 59.85 0.48 4.54 16 21 C -0.26 -6.71 9.34 -15.06 -0.14 -6.85 16 22 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 23 C 0.00 0.11 5.06 -17.43 -0.09 0.03 16 24 N -0.90 -25.84 10.67 55.49 0.59 -25.25 16 25 Si 0.90 21.14 29.58 -169.99 -5.03 16.11 16 26 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 28 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 29 H 0.05 0.92 7.67 -51.93 -0.40 0.52 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 1.22 6.86 -51.93 -0.36 0.86 16 34 H 0.41 7.09 7.89 -40.82 -0.32 6.77 16 35 H 0.13 1.80 8.12 -51.93 -0.42 1.37 16 36 H 0.12 1.43 8.14 -51.93 -0.42 1.01 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.08 0.41 8.10 -51.93 -0.42 -0.01 16 41 H 0.07 0.27 8.11 -51.93 -0.42 -0.15 16 42 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 43 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.03 0.76 7.40 -51.93 -0.38 0.38 16 46 H 0.04 1.12 7.21 -51.93 -0.37 0.75 16 47 H 0.00 -0.03 6.53 -51.93 -0.34 -0.37 16 48 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 391.20 15.07 5.90 5.90 Total: -1.00 -36.88 391.20 -9.06 -45.93 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -7.62 Total: 2.79 kcal Atomic # 6 Polarization: 25.00 SS G_CDS: -2.20 Total: 22.80 kcal Atomic # 7 Polarization: -70.17 SS G_CDS: -0.29 Total: -70.46 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: 0.18 Total: -23.07 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.11 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.88 -9.06 -45.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570745904.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.775 kcal (2) G-P(sol) polarization free energy of solvation -36.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds