Wall clock time and date at job start Tue Mar 31 2020 20:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46886 * 2 1 4 4 C 1.53001 * 109.46893 * 119.99728 * 2 1 3 5 5 N 1.46499 * 109.46898 * 175.00329 * 4 2 1 6 6 C 1.34776 * 119.99822 * 180.02562 * 5 4 2 7 7 O 1.21272 * 120.00169 * 359.97438 * 6 5 4 8 8 C 1.50711 * 119.99944 * 179.97438 * 6 5 4 9 9 N 1.46497 * 109.46985 * 179.97438 * 8 6 5 10 10 N 1.40313 * 126.32496 * 270.02566 * 9 8 6 11 11 C 1.28870 * 108.11807 * 180.51658 * 10 9 8 12 12 N 1.38010 * 108.82207 * 0.53928 * 11 10 9 13 13 C 1.34316 * 108.32203 * 358.31505 * 12 11 10 14 14 O 1.21815 * 126.33557 * 182.03554 * 13 12 11 15 15 C 1.46721 * 124.17761 * 177.61149 * 12 11 10 16 16 C 1.53291 * 108.65964 * 19.33305 * 15 12 11 17 17 C 1.53227 * 109.35990 * 308.21920 * 16 15 12 18 18 C 1.51117 * 127.46469 * 180.94386 * 11 10 9 19 19 N 1.46498 * 109.47288 * 239.99709 * 2 1 3 20 20 C 1.46498 * 120.00113 * 300.00167 * 19 2 1 21 21 C 1.36939 * 120.00059 * 120.00192 * 19 2 1 22 22 H 1.08000 * 119.99934 * 20.37424 * 21 19 2 23 23 C 1.38815 * 120.00192 * 200.37845 * 21 19 2 24 24 N 1.31616 * 120.00015 * 14.98517 * 23 21 19 25 25 Si 1.86795 * 119.99966 * 194.98745 * 23 21 19 26 26 H 1.48504 * 109.47263 * 85.00274 * 25 23 21 27 27 H 1.48505 * 109.47303 * 204.99740 * 25 23 21 28 28 H 1.48503 * 109.47495 * 325.00222 * 25 23 21 29 29 H 1.09003 * 109.46886 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46852 * 60.00635 * 1 2 3 31 31 H 1.08993 * 109.47814 * 300.00335 * 1 2 3 32 32 H 1.09000 * 109.47089 * 295.00159 * 4 2 1 33 33 H 1.08998 * 109.47298 * 55.00358 * 4 2 1 34 34 H 0.96999 * 120.00459 * 359.97438 * 5 4 2 35 35 H 1.09001 * 109.46731 * 300.00017 * 8 6 5 36 36 H 1.08998 * 109.46961 * 59.99720 * 8 6 5 37 37 H 1.08999 * 109.60699 * 259.58296 * 15 12 11 38 38 H 1.09005 * 109.60918 * 139.08376 * 15 12 11 39 39 H 1.09004 * 109.48728 * 188.25116 * 16 15 12 40 40 H 1.08998 * 109.48887 * 68.18581 * 16 15 12 41 41 H 1.09003 * 109.54959 * 310.86415 * 17 16 15 42 42 H 1.09002 * 109.62119 * 190.63482 * 17 16 15 43 43 H 1.09003 * 109.74651 * 317.31722 * 18 11 10 44 44 H 1.09001 * 109.75326 * 78.00547 * 18 11 10 45 45 H 1.08998 * 109.47547 * 95.10946 * 20 19 2 46 46 H 1.09003 * 109.47342 * 215.10909 * 20 19 2 47 47 H 1.09001 * 109.47010 * 335.10162 * 20 19 2 48 48 H 0.97001 * 120.00160 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.1729 -1.4290 2.1908 7 8 3.5698 -1.8840 3.1395 8 6 5.6749 -1.5376 2.1303 9 7 6.1631 -2.2281 3.3265 10 7 6.5329 -1.6280 4.5398 11 6 6.9183 -2.5572 5.3453 12 7 6.8285 -3.7729 4.6983 13 6 6.3349 -3.5606 3.4673 14 8 6.0895 -4.4120 2.6314 15 6 7.2324 -5.0533 5.2901 16 6 7.2870 -4.8940 6.8137 17 6 8.1461 -3.6752 7.1664 18 6 7.3898 -2.3994 6.7723 19 7 2.0183 -0.6907 -1.1961 20 6 1.6644 -2.0932 -1.4279 21 6 2.8057 -0.0252 -2.0975 22 1 3.3356 0.8665 -1.7967 23 6 2.9227 -0.4967 -3.3979 24 7 2.0697 -1.3896 -3.8534 25 14 4.2907 0.1360 -4.5012 26 1 5.5271 -0.6494 -4.2567 27 1 3.8864 -0.0074 -5.9229 28 1 4.5464 1.5678 -4.2013 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3634 0.5138 0.8899 32 1 1.7515 -0.1582 2.1370 33 1 1.6054 -1.7198 1.2952 34 1 3.9824 -0.4627 0.4317 35 1 5.9629 -2.1005 1.2424 36 1 6.1097 -0.5392 2.0845 37 1 8.2168 -5.3347 4.9162 38 1 6.5056 -5.8226 5.0287 39 1 7.7248 -5.7882 7.2574 40 1 6.2781 -4.7520 7.2009 41 1 9.0889 -3.7234 6.6214 42 1 8.3447 -3.6652 8.2382 43 1 8.0548 -1.5389 6.8474 44 1 6.5322 -2.2605 7.4305 45 1 0.7890 -2.1449 -2.0752 46 1 2.5001 -2.6047 -1.9057 47 1 1.4411 -2.5738 -0.4754 48 1 2.1517 -1.7194 -4.7619 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570745904.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:32 Heat of formation + Delta-G solvation = 5.796230 kcal Electronic energy + Delta-G solvation = -29931.646011 eV Core-core repulsion = 25830.424893 eV Total energy + Delta-G solvation = -4101.221118 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.65782 -40.79314 -38.86157 -38.46693 -37.76239 -35.47424 -34.50872 -33.84320 -33.46754 -31.22833 -30.03726 -29.20678 -28.04573 -26.93430 -25.24373 -24.82607 -23.63984 -22.93244 -21.52080 -20.96427 -20.67877 -18.90870 -18.57215 -18.48081 -17.56424 -17.35628 -17.20467 -16.91871 -16.44341 -16.23587 -15.73726 -15.61771 -15.28421 -15.17651 -14.98484 -14.68094 -14.46894 -14.27779 -14.03589 -13.98830 -13.73450 -13.30588 -13.14607 -13.05061 -12.90537 -12.86749 -12.67663 -12.54975 -12.29776 -12.10079 -12.08314 -11.87981 -11.84574 -11.78294 -11.53947 -11.48194 -11.36005 -10.78436 -10.60934 -10.05150 -9.66848 -8.82379 -7.78971 -5.25371 0.57515 0.94228 1.46050 1.50072 1.50774 1.52321 1.59365 1.95439 2.31601 2.53643 3.21363 3.36199 3.56658 3.59931 3.72773 3.75314 3.84767 3.92845 4.02561 4.09487 4.32972 4.33341 4.38206 4.44835 4.55429 4.56514 4.67767 4.72199 4.78685 4.87051 4.89719 4.90183 5.00123 5.00890 5.06683 5.18140 5.20729 5.32094 5.35885 5.38984 5.52222 5.61246 5.67336 5.72379 6.33599 6.52212 6.54463 6.86128 7.13761 7.17759 7.88085 8.34086 9.25143 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017272 B = 0.002632 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.755870 B =10634.584418 C =11267.646249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.158 3.842 3 H 0.082 0.918 4 C 0.119 3.881 5 N -0.697 5.697 6 C 0.493 3.507 7 O -0.584 6.584 8 C 0.142 3.858 9 N -0.444 5.444 10 N -0.298 5.298 11 C 0.285 3.715 12 N -0.553 5.553 13 C 0.634 3.366 14 O -0.601 6.601 15 C 0.117 3.883 16 C -0.129 4.129 17 C -0.117 4.117 18 C -0.039 4.039 19 N -0.603 5.603 20 C 0.186 3.814 21 C -0.255 4.255 22 H 0.087 0.913 23 C -0.056 4.056 24 N -0.941 5.941 25 Si 0.966 3.034 26 H -0.288 1.288 27 H -0.306 1.306 28 H -0.263 1.263 29 H 0.039 0.961 30 H 0.044 0.956 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.039 0.961 34 H 0.415 0.585 35 H 0.128 0.872 36 H 0.160 0.840 37 H 0.095 0.905 38 H 0.076 0.924 39 H 0.122 0.878 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.120 0.880 43 H 0.126 0.874 44 H 0.117 0.883 45 H 0.002 0.998 46 H 0.012 0.988 47 H 0.013 0.987 48 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.567 -1.214 26.037 29.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.051 3.949 3 H 0.100 0.900 4 C -0.007 4.007 5 N -0.348 5.348 6 C 0.278 3.722 7 O -0.465 6.465 8 C 0.017 3.983 9 N -0.262 5.262 10 N -0.120 5.120 11 C 0.007 3.993 12 N -0.281 5.281 13 C 0.333 3.667 14 O -0.478 6.478 15 C -0.003 4.003 16 C -0.167 4.167 17 C -0.155 4.155 18 C -0.078 4.078 19 N -0.326 5.326 20 C 0.041 3.959 21 C -0.385 4.385 22 H 0.105 0.895 23 C -0.251 4.251 24 N -0.588 5.588 25 Si 0.795 3.205 26 H -0.215 1.215 27 H -0.233 1.233 28 H -0.187 1.187 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.057 0.943 34 H 0.252 0.748 35 H 0.145 0.855 36 H 0.177 0.823 37 H 0.113 0.887 38 H 0.094 0.906 39 H 0.140 0.860 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.139 0.861 43 H 0.144 0.856 44 H 0.135 0.865 45 H 0.020 0.980 46 H 0.031 0.969 47 H 0.032 0.968 48 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 13.784 -1.182 25.746 29.228 hybrid contribution 0.136 -0.806 -2.071 2.227 sum 13.920 -1.988 23.675 27.536 Atomic orbital electron populations 1.22080 0.96149 1.01104 1.01543 1.20786 0.93574 0.95702 0.84827 0.90012 1.21787 0.79623 1.00129 0.99183 1.45781 1.08266 1.58021 1.22776 1.21285 0.90991 0.77532 0.82360 1.90646 1.70930 1.49563 1.35324 1.21373 0.90307 1.01998 0.84595 1.48448 1.60877 1.04654 1.12230 1.76720 1.21879 1.21817 0.91616 1.25427 0.95386 0.80007 0.98496 1.46301 1.58188 1.10739 1.12897 1.16891 0.81737 0.84016 0.84022 1.91035 1.61102 1.48543 1.47129 1.22215 1.01584 0.80467 0.96074 1.22031 1.02397 1.01899 0.90359 1.21760 0.98042 0.90856 1.04812 1.20904 1.02721 1.02402 0.81803 1.44162 1.58445 1.07771 1.22210 1.20346 0.97413 0.84313 0.93873 1.19643 1.19230 1.09384 0.90261 0.89503 1.25747 1.00659 1.00419 0.98256 1.70269 1.37136 1.35459 1.15917 0.85294 0.79182 0.78634 0.77375 1.21459 1.23313 1.18738 0.94144 0.93702 0.90408 0.90725 0.94262 0.74801 0.85467 0.82297 0.88707 0.90575 0.85990 0.90878 0.90366 0.86124 0.85562 0.86507 0.97985 0.96869 0.96823 0.94666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.18 9.19 71.98 0.66 -4.52 16 2 C 0.16 5.95 2.87 44.99 0.13 6.07 16 3 H 0.08 2.90 7.85 -2.39 -0.02 2.88 16 4 C 0.12 4.24 4.93 86.38 0.43 4.67 16 5 N -0.70 -24.24 5.39 -463.06 -2.49 -26.73 16 6 C 0.49 17.95 7.90 87.66 0.69 18.64 16 7 O -0.58 -25.80 16.43 -3.00 -0.05 -25.85 16 8 C 0.14 4.25 6.87 85.64 0.59 4.84 16 9 N -0.44 -14.54 3.12 -481.97 -1.50 -16.04 16 10 N -0.30 -8.25 12.51 -49.11 -0.61 -8.86 16 11 C 0.28 5.96 7.73 137.75 1.06 7.02 16 12 N -0.55 -13.81 3.13 -644.23 -2.02 -15.83 16 13 C 0.63 22.55 8.64 179.10 1.55 24.10 16 14 O -0.60 -26.16 17.83 -4.72 -0.08 -26.24 16 15 C 0.12 1.83 6.88 86.43 0.59 2.42 16 16 C -0.13 -0.80 5.94 30.77 0.18 -0.62 16 17 C -0.12 -0.35 5.96 30.83 0.18 -0.16 16 18 C -0.04 -0.31 6.32 30.14 0.19 -0.12 16 19 N -0.60 -28.28 2.29 -702.78 -1.61 -29.89 16 20 C 0.19 9.42 8.00 127.77 1.02 10.44 16 21 C -0.26 -12.88 9.34 84.03 0.79 -12.10 16 22 H 0.09 4.04 7.81 -2.91 -0.02 4.02 16 23 C -0.06 -3.02 5.06 84.86 0.43 -2.59 16 24 N -0.94 -55.46 10.67 21.65 0.23 -55.23 16 25 Si 0.97 43.72 29.58 68.60 2.03 45.75 16 26 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 27 H -0.31 -14.43 7.11 99.48 0.71 -13.72 16 28 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 29 H 0.04 1.46 7.67 -2.39 -0.02 1.45 16 30 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 33 H 0.04 1.58 6.86 -2.39 -0.02 1.56 16 34 H 0.41 13.87 7.89 -92.71 -0.73 13.14 16 35 H 0.13 3.72 8.12 -2.39 -0.02 3.70 16 36 H 0.16 3.46 8.14 -2.39 -0.02 3.44 16 37 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 39 H 0.12 0.10 8.14 -2.38 -0.02 0.08 16 40 H 0.07 0.57 8.10 -2.39 -0.02 0.55 16 41 H 0.08 0.24 8.11 -2.39 -0.02 0.22 16 42 H 0.12 -0.31 8.14 -2.39 -0.02 -0.33 16 43 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.00 0.10 7.40 -2.39 -0.02 0.09 16 46 H 0.01 0.71 7.21 -2.39 -0.02 0.69 16 47 H 0.01 0.63 6.53 -2.39 -0.02 0.61 16 48 H 0.24 14.21 8.31 -92.71 -0.77 13.44 16 Total: -1.00 -84.18 391.20 2.62 -81.56 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 0.24 Total: 19.28 kcal Atomic # 6 Polarization: 49.60 SS G_CDS: 8.50 Total: 58.10 kcal Atomic # 7 Polarization: -144.58 SS G_CDS: -8.01 Total: -152.59 kcal Atomic # 8 Polarization: -51.96 SS G_CDS: -0.13 Total: -52.09 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -84.18 2.62 -81.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570745904.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.351 kcal (2) G-P(sol) polarization free energy of solvation -84.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds