Wall clock time and date at job start Tue Mar 31 2020 20:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46497 * 109.47438 * 2 1 4 4 N 1.28449 * 125.18757 * 265.59961 * 3 2 1 5 5 C 1.30865 * 110.92379 * 180.15866 * 4 3 2 6 6 C 1.39674 * 107.86210 * 359.61331 * 5 4 3 7 7 C 1.36599 * 125.19346 * 85.33065 * 3 2 1 8 8 C 1.47167 * 126.87935 * 359.97438 * 7 3 2 9 9 O 1.21620 * 120.00187 * 353.15158 * 8 7 3 10 10 N 1.34779 * 119.99593 * 173.14770 * 8 7 3 11 11 C 1.46495 * 120.00185 * 354.50894 * 10 8 7 12 12 C 1.46500 * 119.99677 * 174.50330 * 10 8 7 13 13 C 1.52995 * 109.47305 * 90.00257 * 12 10 8 14 14 H 1.09005 * 109.46909 * 64.99708 * 13 12 10 15 15 C 1.52988 * 109.47276 * 184.99836 * 13 12 10 16 16 N 1.46909 * 109.47076 * 305.00139 * 13 12 10 17 17 C 1.46895 * 110.99825 * 154.99814 * 16 13 12 18 18 C 1.50701 * 109.46664 * 180.02562 * 17 16 13 19 19 O 1.21292 * 120.00384 * 359.97438 * 18 17 16 20 20 N 1.34779 * 119.99687 * 179.97438 * 18 17 16 21 21 C 1.37097 * 119.99750 * 179.97438 * 20 18 17 22 22 H 1.08005 * 120.00322 * 359.97438 * 21 20 18 23 23 C 1.38958 * 120.00001 * 180.02562 * 21 20 18 24 24 N 1.31413 * 119.99613 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 119.99866 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47409 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47132 * 120.00316 * 25 23 21 28 28 H 1.48497 * 109.47029 * 239.99783 * 25 23 21 29 29 H 1.08999 * 109.47185 * 64.89997 * 1 2 3 30 30 H 1.09000 * 109.47578 * 184.90928 * 1 2 3 31 31 H 1.09005 * 109.47179 * 304.90416 * 1 2 3 32 32 H 1.09007 * 109.47140 * 239.99826 * 2 1 3 33 33 H 1.08997 * 109.47337 * 120.00267 * 2 1 3 34 34 H 1.08002 * 126.06753 * 179.87450 * 5 4 3 35 35 H 1.08001 * 127.31588 * 180.24266 * 6 5 4 36 36 H 1.08998 * 109.47753 * 84.17355 * 11 10 8 37 37 H 1.08998 * 109.47513 * 204.18297 * 11 10 8 38 38 H 1.09004 * 109.46892 * 324.17417 * 11 10 8 39 39 H 1.09005 * 109.47073 * 210.00265 * 12 10 8 40 40 H 1.09003 * 109.47332 * 329.99863 * 12 10 8 41 41 H 1.09001 * 109.47647 * 299.99867 * 15 13 12 42 42 H 1.08999 * 109.47319 * 60.00526 * 15 13 12 43 43 H 1.09004 * 109.47070 * 180.02562 * 15 13 12 44 44 H 1.00899 * 110.99689 * 278.95324 * 16 13 12 45 45 H 1.09002 * 109.47103 * 299.99325 * 17 16 13 46 46 H 1.09002 * 109.47501 * 59.99964 * 17 16 13 47 47 H 0.96997 * 120.00173 * 0.02562 * 20 18 17 48 48 H 0.96999 * 119.99487 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.3410 2.0522 -1.0467 5 6 2.7437 3.2550 -0.7249 6 6 2.6660 3.3755 0.6644 7 6 2.1951 2.1537 1.1126 8 6 1.9362 1.7648 2.5081 9 8 1.4039 0.6992 2.7537 10 7 2.2889 2.5896 3.5140 11 6 3.0371 3.8160 3.2275 12 6 1.9241 2.2595 4.8940 13 6 3.0372 1.4245 5.5300 14 1 3.9433 2.0254 5.6071 15 6 2.6030 0.9750 6.9264 16 7 3.3017 0.2445 4.6958 17 6 4.6722 -0.2449 4.8957 18 6 4.9062 -1.4526 4.0251 19 8 4.0184 -1.8653 3.3091 20 7 6.1020 -2.0741 4.0423 21 6 6.3147 -3.1731 3.2507 22 1 5.5239 -3.5411 2.6138 23 6 7.5474 -3.8143 3.2687 24 7 8.5094 -3.3668 4.0441 25 14 7.8373 -5.3112 2.1897 26 1 6.6053 -5.6102 1.4163 27 1 8.9562 -5.0368 1.2528 28 1 8.1809 -6.4772 3.0428 29 1 -0.3633 0.4359 -0.9306 30 1 -0.3634 -1.0239 0.0879 31 1 -0.3634 0.5881 0.8428 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.0733 4.0203 -1.4121 35 1 2.9192 4.2388 1.2619 36 1 2.3430 4.6074 2.9445 37 1 3.5915 4.1194 4.1155 38 1 3.7336 3.6339 2.4090 39 1 1.7888 3.1789 5.4638 40 1 0.9949 1.6897 4.8978 41 1 2.4068 1.8505 7.5454 42 1 1.6969 0.3740 6.8493 43 1 3.3962 0.3804 7.3797 44 1 2.6275 -0.4842 4.8762 45 1 5.3806 0.5388 4.6271 46 1 4.8117 -0.5180 5.9417 47 1 6.8118 -1.7443 4.6151 48 1 9.3697 -3.8146 4.0570 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571384621.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:54 Heat of formation + Delta-G solvation = 32.163385 kcal Electronic energy + Delta-G solvation = -30642.993934 eV Core-core repulsion = 26542.916182 eV Total energy + Delta-G solvation = -4100.077752 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.42260 -39.49258 -38.21179 -36.63664 -35.29549 -34.09115 -33.81164 -31.54439 -31.10689 -30.25970 -29.64019 -27.45427 -26.31924 -26.13354 -23.94396 -23.79199 -22.29943 -21.57321 -20.50094 -19.31617 -19.07592 -17.84953 -17.15119 -16.43253 -16.22738 -15.82648 -15.62103 -15.19762 -14.91442 -14.68146 -14.52645 -14.38138 -14.13361 -13.81940 -13.74650 -13.36104 -13.07854 -12.89447 -12.79386 -12.54413 -12.44787 -12.16129 -12.08869 -11.99126 -11.80789 -11.56699 -11.48253 -11.31170 -11.10571 -11.02922 -10.93385 -10.50822 -10.32235 -10.18900 -9.66245 -9.47075 -9.05471 -8.88295 -8.62047 -8.29038 -7.92253 -7.81655 -6.37988 -3.78149 1.50466 2.49223 2.74296 3.18226 3.18421 3.28476 3.35934 3.54720 3.97860 4.14412 4.37056 4.56060 4.67580 4.88095 5.02305 5.09860 5.11263 5.12413 5.18072 5.27347 5.27883 5.31719 5.32892 5.40779 5.45193 5.54004 5.64548 5.67538 5.72504 5.75352 5.79254 5.80515 5.93439 6.02426 6.07972 6.12258 6.15133 6.33813 6.54215 6.63497 6.90372 7.36304 7.45981 7.58812 7.85341 8.11484 8.19632 8.43316 8.66892 9.22898 9.59917 10.12381 10.80168 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009662 B = 0.003805 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2897.227315 B = 7357.016696 C = 9007.751579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.112 3.888 3 N -0.248 5.248 4 N -0.284 5.284 5 C -0.012 4.012 6 C -0.220 4.220 7 C -0.021 4.021 8 C 0.596 3.404 9 O -0.503 6.503 10 N -0.594 5.594 11 C 0.065 3.935 12 C 0.135 3.865 13 C 0.064 3.936 14 H 0.075 0.925 15 C -0.182 4.182 16 N -0.647 5.647 17 C 0.052 3.948 18 C 0.442 3.558 19 O -0.575 6.575 20 N -0.568 5.568 21 C -0.295 4.295 22 H 0.102 0.898 23 C 0.021 3.979 24 N -0.904 5.904 25 Si 0.927 3.073 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 H 0.055 0.945 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.123 0.877 34 H 0.181 0.819 35 H 0.172 0.828 36 H 0.057 0.943 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.058 0.942 44 H 0.353 0.647 45 H 0.079 0.921 46 H 0.039 0.961 47 H 0.391 0.609 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.882 17.315 1.071 21.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.007 4.007 3 N -0.035 5.035 4 N -0.117 5.117 5 C -0.188 4.188 6 C -0.249 4.249 7 C -0.150 4.150 8 C 0.382 3.618 9 O -0.376 6.376 10 N -0.328 5.328 11 C -0.078 4.078 12 C 0.011 3.989 13 C -0.048 4.048 14 H 0.093 0.907 15 C -0.241 4.241 16 N -0.280 5.280 17 C -0.081 4.081 18 C 0.228 3.772 19 O -0.459 6.459 20 N -0.205 5.205 21 C -0.425 4.425 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.546 5.546 25 Si 0.755 3.245 26 H -0.193 1.193 27 H -0.208 1.208 28 H -0.208 1.208 29 H 0.074 0.926 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.114 0.886 33 H 0.141 0.859 34 H 0.198 0.802 35 H 0.189 0.811 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.101 0.899 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.174 0.826 45 H 0.097 0.903 46 H 0.057 0.943 47 H 0.224 0.776 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.669 15.850 -0.751 20.305 hybrid contribution 1.127 -0.296 1.443 1.855 sum -11.542 15.554 0.692 19.381 Atomic orbital electron populations 1.22031 0.93671 1.03514 1.02282 1.22199 0.95796 0.76314 1.06402 1.45869 1.43549 1.12268 1.01854 1.73176 1.17320 1.06957 1.14260 1.23538 1.05323 0.94708 0.95204 1.22910 1.08016 0.98327 0.95627 1.21513 1.10027 0.93174 0.90289 1.16653 0.79137 0.83481 0.82482 1.90806 1.42335 1.20531 1.83952 1.47044 1.56615 1.22929 1.06199 1.22378 0.96246 0.86257 1.02884 1.21489 0.98214 0.98568 0.80586 1.22024 0.98555 0.93875 0.90333 0.90654 1.22470 1.02070 1.01757 0.97818 1.60110 1.02859 1.08984 1.56036 1.21680 0.91787 0.97229 0.97407 1.19857 0.84047 0.86280 0.87037 1.90538 1.43698 1.67498 1.44123 1.41877 1.11815 1.27181 1.39662 1.19729 0.98662 1.04218 1.19887 0.88018 1.25236 0.95307 0.99539 0.97939 1.69623 1.04320 1.41499 1.39119 0.85828 0.78477 0.80726 0.79490 1.19270 1.20785 1.20803 0.92582 0.90165 0.91570 0.88612 0.85896 0.80177 0.81056 0.92504 0.91249 0.89618 0.90413 0.89914 0.92277 0.92146 0.92306 0.82606 0.90288 0.94314 0.77631 0.92036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 10.14 37.15 0.38 -1.61 16 2 C 0.11 1.70 6.32 -4.05 -0.03 1.68 16 3 N -0.25 -3.94 3.35 -57.14 -0.19 -4.13 16 4 N -0.28 -4.39 11.90 30.59 0.36 -4.02 16 5 C -0.01 -0.15 12.03 -17.43 -0.21 -0.36 16 6 C -0.22 -2.65 8.87 -38.99 -0.35 -3.00 16 7 C -0.02 -0.31 6.79 -82.06 -0.56 -0.87 16 8 C 0.60 9.19 7.07 -12.63 -0.09 9.10 16 9 O -0.50 -9.08 12.83 5.26 0.07 -9.02 16 10 N -0.59 -7.05 2.78 -182.95 -0.51 -7.56 16 11 C 0.07 0.55 8.67 59.84 0.52 1.06 16 12 C 0.13 1.41 5.16 -4.04 -0.02 1.39 16 13 C 0.06 0.75 2.89 -67.72 -0.20 0.55 16 14 H 0.08 0.84 7.80 -51.93 -0.40 0.44 16 15 C -0.18 -1.81 9.16 37.15 0.34 -1.47 16 16 N -0.65 -10.62 3.93 -107.99 -0.42 -11.05 16 17 C 0.05 0.94 5.96 -4.98 -0.03 0.91 16 18 C 0.44 10.72 7.82 -10.98 -0.09 10.63 16 19 O -0.58 -15.97 15.78 5.55 0.09 -15.88 16 20 N -0.57 -14.75 5.29 -10.96 -0.06 -14.81 16 21 C -0.30 -8.42 9.68 -14.93 -0.14 -8.57 16 22 H 0.10 3.06 7.16 -52.48 -0.38 2.68 16 23 C 0.02 0.57 5.50 -17.46 -0.10 0.48 16 24 N -0.90 -25.05 13.05 55.50 0.72 -24.33 16 25 Si 0.93 21.54 29.55 -169.99 -5.02 16.51 16 26 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 28 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.91 7.68 -51.93 -0.40 0.51 16 32 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 33 H 0.12 2.22 6.76 -51.93 -0.35 1.87 16 34 H 0.18 1.60 8.06 -52.49 -0.42 1.18 16 35 H 0.17 1.45 4.60 -52.49 -0.24 1.21 16 36 H 0.06 0.36 7.43 -51.93 -0.39 -0.02 16 37 H 0.07 0.46 8.03 -51.93 -0.42 0.04 16 38 H 0.09 0.79 5.27 -51.93 -0.27 0.52 16 39 H 0.08 0.57 8.07 -51.93 -0.42 0.15 16 40 H 0.08 0.97 7.50 -51.93 -0.39 0.58 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 43 H 0.06 0.64 7.45 -51.93 -0.39 0.25 16 44 H 0.35 6.44 8.17 -39.29 -0.32 6.12 16 45 H 0.08 1.35 8.06 -51.93 -0.42 0.94 16 46 H 0.04 0.64 7.44 -51.93 -0.39 0.25 16 47 H 0.39 9.74 7.90 -40.82 -0.32 9.42 16 48 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 392.21 15.07 5.91 5.91 Total: -1.00 -34.87 392.21 -6.78 -41.65 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: -7.16 Total: 16.80 kcal Atomic # 6 Polarization: 10.49 SS G_CDS: -0.56 Total: 9.92 kcal Atomic # 7 Polarization: -65.81 SS G_CDS: -0.09 Total: -65.90 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: 0.16 Total: -24.89 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.87 -6.78 -41.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571384621.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.812 kcal (2) G-P(sol) polarization free energy of solvation -34.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds