Wall clock time and date at job start Tue Mar 31 2020 20:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46497 * 109.47438 * 2 1 4 4 N 1.28449 * 125.18757 * 265.59961 * 3 2 1 5 5 C 1.30865 * 110.92379 * 180.15866 * 4 3 2 6 6 C 1.39674 * 107.86210 * 359.61331 * 5 4 3 7 7 C 1.36599 * 125.19346 * 85.33065 * 3 2 1 8 8 C 1.47167 * 126.87935 * 359.97438 * 7 3 2 9 9 O 1.21620 * 120.00187 * 353.15158 * 8 7 3 10 10 N 1.34779 * 119.99593 * 173.14770 * 8 7 3 11 11 C 1.46495 * 120.00185 * 354.50894 * 10 8 7 12 12 C 1.46500 * 119.99677 * 174.50330 * 10 8 7 13 13 C 1.52995 * 109.47305 * 90.00257 * 12 10 8 14 14 H 1.09005 * 109.46909 * 64.99708 * 13 12 10 15 15 C 1.52988 * 109.47276 * 184.99836 * 13 12 10 16 16 N 1.46909 * 109.47076 * 305.00139 * 13 12 10 17 17 C 1.46895 * 110.99825 * 154.99814 * 16 13 12 18 18 C 1.50701 * 109.46664 * 180.02562 * 17 16 13 19 19 O 1.21292 * 120.00384 * 359.97438 * 18 17 16 20 20 N 1.34779 * 119.99687 * 179.97438 * 18 17 16 21 21 C 1.37097 * 119.99750 * 179.97438 * 20 18 17 22 22 H 1.08005 * 120.00322 * 359.97438 * 21 20 18 23 23 C 1.38958 * 120.00001 * 180.02562 * 21 20 18 24 24 N 1.31413 * 119.99613 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 119.99866 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47409 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47132 * 120.00316 * 25 23 21 28 28 H 1.48497 * 109.47029 * 239.99783 * 25 23 21 29 29 H 1.08999 * 109.47185 * 64.89997 * 1 2 3 30 30 H 1.09000 * 109.47578 * 184.90928 * 1 2 3 31 31 H 1.09005 * 109.47179 * 304.90416 * 1 2 3 32 32 H 1.09007 * 109.47140 * 239.99826 * 2 1 3 33 33 H 1.08997 * 109.47337 * 120.00267 * 2 1 3 34 34 H 1.08002 * 126.06753 * 179.87450 * 5 4 3 35 35 H 1.08001 * 127.31588 * 180.24266 * 6 5 4 36 36 H 1.08998 * 109.47753 * 84.17355 * 11 10 8 37 37 H 1.08998 * 109.47513 * 204.18297 * 11 10 8 38 38 H 1.09004 * 109.46892 * 324.17417 * 11 10 8 39 39 H 1.09005 * 109.47073 * 210.00265 * 12 10 8 40 40 H 1.09003 * 109.47332 * 329.99863 * 12 10 8 41 41 H 1.09001 * 109.47647 * 299.99867 * 15 13 12 42 42 H 1.08999 * 109.47319 * 60.00526 * 15 13 12 43 43 H 1.09004 * 109.47070 * 180.02562 * 15 13 12 44 44 H 1.00899 * 110.99689 * 278.95324 * 16 13 12 45 45 H 1.09002 * 109.47103 * 299.99325 * 17 16 13 46 46 H 1.09002 * 109.47501 * 59.99964 * 17 16 13 47 47 H 0.96997 * 120.00173 * 0.02562 * 20 18 17 48 48 H 0.96999 * 119.99487 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.3410 2.0522 -1.0467 5 6 2.7437 3.2550 -0.7249 6 6 2.6660 3.3755 0.6644 7 6 2.1951 2.1537 1.1126 8 6 1.9362 1.7648 2.5081 9 8 1.4039 0.6992 2.7537 10 7 2.2889 2.5896 3.5140 11 6 3.0371 3.8160 3.2275 12 6 1.9241 2.2595 4.8940 13 6 3.0372 1.4245 5.5300 14 1 3.9433 2.0254 5.6071 15 6 2.6030 0.9750 6.9264 16 7 3.3017 0.2445 4.6958 17 6 4.6722 -0.2449 4.8957 18 6 4.9062 -1.4526 4.0251 19 8 4.0184 -1.8653 3.3091 20 7 6.1020 -2.0741 4.0423 21 6 6.3147 -3.1731 3.2507 22 1 5.5239 -3.5411 2.6138 23 6 7.5474 -3.8143 3.2687 24 7 8.5094 -3.3668 4.0441 25 14 7.8373 -5.3112 2.1897 26 1 6.6053 -5.6102 1.4163 27 1 8.9562 -5.0368 1.2528 28 1 8.1809 -6.4772 3.0428 29 1 -0.3633 0.4359 -0.9306 30 1 -0.3634 -1.0239 0.0879 31 1 -0.3634 0.5881 0.8428 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.0733 4.0203 -1.4121 35 1 2.9192 4.2388 1.2619 36 1 2.3430 4.6074 2.9445 37 1 3.5915 4.1194 4.1155 38 1 3.7336 3.6339 2.4090 39 1 1.7888 3.1789 5.4638 40 1 0.9949 1.6897 4.8978 41 1 2.4068 1.8505 7.5454 42 1 1.6969 0.3740 6.8493 43 1 3.3962 0.3804 7.3797 44 1 2.6275 -0.4842 4.8762 45 1 5.3806 0.5388 4.6271 46 1 4.8117 -0.5180 5.9417 47 1 6.8118 -1.7443 4.6151 48 1 9.3697 -3.8146 4.0570 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571384621.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:53 Heat of formation + Delta-G solvation = 6.196636 kcal Electronic energy + Delta-G solvation = -30644.119937 eV Core-core repulsion = 26542.916182 eV Total energy + Delta-G solvation = -4101.203755 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.47025 -40.57398 -40.03165 -37.84102 -36.40480 -35.88369 -35.14905 -33.31186 -32.57775 -31.36740 -30.69315 -28.21732 -27.93079 -27.16640 -25.69177 -24.89905 -23.31908 -22.59126 -21.50273 -21.09555 -20.23386 -19.92035 -18.17179 -17.83547 -17.45005 -17.05125 -16.79792 -16.56048 -16.35552 -16.09475 -15.84808 -15.62331 -15.52203 -15.16378 -14.86970 -14.66876 -14.37835 -13.92073 -13.76321 -13.68362 -13.58916 -13.55314 -13.38834 -13.09648 -13.06311 -12.92681 -12.80691 -12.57644 -12.44436 -12.33452 -12.23357 -12.14836 -11.83825 -11.52739 -11.48614 -10.79041 -10.33883 -10.16652 -10.02055 -9.89592 -9.52321 -9.03164 -8.48939 -5.97097 0.43563 1.33044 1.37635 1.46148 1.51921 1.76421 2.05510 2.21605 2.26819 2.49114 2.98732 3.18261 3.53643 3.59763 3.64566 3.98997 4.01334 4.11816 4.21225 4.27589 4.32068 4.33586 4.36702 4.45031 4.49097 4.55301 4.58605 4.64407 4.68679 4.75298 4.86333 4.86868 4.89865 4.97201 5.03599 5.05814 5.08367 5.29800 5.38191 5.64687 5.75493 5.83177 5.92699 6.21558 6.48260 6.52672 6.59841 7.11839 7.15052 7.38800 7.55510 8.12509 8.68990 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009662 B = 0.003805 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2897.227315 B = 7357.016696 C = 9007.751579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.115 3.885 3 N -0.269 5.269 4 N -0.315 5.315 5 C -0.011 4.011 6 C -0.201 4.201 7 C -0.052 4.052 8 C 0.584 3.416 9 O -0.545 6.545 10 N -0.589 5.589 11 C 0.056 3.944 12 C 0.134 3.866 13 C 0.064 3.936 14 H 0.090 0.910 15 C -0.174 4.174 16 N -0.661 5.661 17 C 0.070 3.930 18 C 0.436 3.564 19 O -0.617 6.617 20 N -0.576 5.576 21 C -0.331 4.331 22 H 0.074 0.926 23 C -0.012 4.012 24 N -0.921 5.921 25 Si 0.990 3.010 26 H -0.276 1.276 27 H -0.270 1.270 28 H -0.268 1.268 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.051 0.949 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.218 0.782 35 H 0.211 0.789 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.076 0.924 39 H 0.123 0.877 40 H 0.064 0.936 41 H 0.090 0.910 42 H 0.050 0.950 43 H 0.049 0.951 44 H 0.338 0.662 45 H 0.095 0.905 46 H 0.060 0.940 47 H 0.395 0.605 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.168 20.082 1.915 23.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.005 4.005 3 N -0.056 5.056 4 N -0.148 5.148 5 C -0.187 4.187 6 C -0.229 4.229 7 C -0.180 4.180 8 C 0.370 3.630 9 O -0.422 6.422 10 N -0.321 5.321 11 C -0.085 4.085 12 C 0.012 3.988 13 C -0.046 4.046 14 H 0.108 0.892 15 C -0.233 4.233 16 N -0.293 5.293 17 C -0.063 4.063 18 C 0.224 3.776 19 O -0.502 6.502 20 N -0.214 5.214 21 C -0.461 4.461 22 H 0.092 0.908 23 C -0.212 4.212 24 N -0.562 5.562 25 Si 0.814 3.186 26 H -0.201 1.201 27 H -0.195 1.195 28 H -0.193 1.193 29 H 0.086 0.914 30 H 0.109 0.891 31 H 0.070 0.930 32 H 0.117 0.883 33 H 0.103 0.897 34 H 0.235 0.765 35 H 0.227 0.773 36 H 0.103 0.897 37 H 0.114 0.886 38 H 0.094 0.906 39 H 0.141 0.859 40 H 0.082 0.918 41 H 0.108 0.892 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.157 0.843 45 H 0.113 0.887 46 H 0.078 0.922 47 H 0.229 0.771 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.923 18.681 0.138 22.162 hybrid contribution 0.918 -1.042 1.207 1.839 sum -11.005 17.639 1.345 20.834 Atomic orbital electron populations 1.21910 0.91932 1.04039 1.02123 1.22014 0.97213 0.76747 1.04509 1.45904 1.44884 1.12409 1.02449 1.73139 1.18541 1.08347 1.14738 1.24280 1.03796 0.94358 0.96276 1.23427 1.05683 0.98114 0.95666 1.21902 1.11458 0.94430 0.90230 1.16968 0.79090 0.83546 0.83370 1.90783 1.44446 1.22399 1.84570 1.47190 1.55788 1.23255 1.05909 1.22632 0.96636 0.85244 1.03999 1.21651 0.96799 1.00101 0.80298 1.22184 0.99705 0.92079 0.90660 0.89210 1.22376 1.01214 1.02742 0.96977 1.60120 1.01273 1.09697 1.58207 1.21498 0.93414 0.94579 0.96805 1.20997 0.82749 0.87202 0.86658 1.90518 1.44829 1.68964 1.45901 1.41938 1.12640 1.27080 1.39759 1.19638 0.98877 1.06201 1.21340 0.90838 1.25993 0.94510 1.01828 0.98832 1.69675 1.04646 1.42376 1.39484 0.84915 0.78108 0.77590 0.77989 1.20118 1.19510 1.19320 0.91421 0.89072 0.92956 0.88341 0.89734 0.76535 0.77288 0.89725 0.88608 0.90579 0.85895 0.91785 0.89164 0.93060 0.93227 0.84283 0.88690 0.92221 0.77145 0.91318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.83 10.14 71.98 0.73 -3.10 16 2 C 0.12 3.80 6.32 86.38 0.55 4.35 16 3 N -0.27 -8.88 3.35 -334.70 -1.12 -10.00 16 4 N -0.32 -9.74 11.90 -57.14 -0.68 -10.42 16 5 C -0.01 -0.27 12.03 85.18 1.02 0.76 16 6 C -0.20 -4.43 8.87 22.66 0.20 -4.23 16 7 C -0.05 -1.57 6.79 40.79 0.28 -1.29 16 8 C 0.58 18.26 7.07 86.59 0.61 18.87 16 9 O -0.54 -20.96 12.83 -4.09 -0.05 -21.01 16 10 N -0.59 -12.90 2.78 -850.99 -2.36 -15.26 16 11 C 0.06 0.73 8.67 127.77 1.11 1.83 16 12 C 0.13 2.50 5.16 86.38 0.45 2.95 16 13 C 0.06 1.37 2.89 44.91 0.13 1.50 16 14 H 0.09 1.68 7.80 -2.38 -0.02 1.66 16 15 C -0.17 -3.07 9.16 71.98 0.66 -2.41 16 16 N -0.66 -21.78 3.93 -495.58 -1.95 -23.73 16 17 C 0.07 2.50 5.96 85.56 0.51 3.01 16 18 C 0.44 21.89 7.82 87.66 0.69 22.58 16 19 O -0.62 -36.22 15.78 -3.07 -0.05 -36.27 16 20 N -0.58 -30.84 5.29 -306.97 -1.62 -32.47 16 21 C -0.33 -19.55 9.68 84.04 0.81 -18.74 16 22 H 0.07 4.68 7.16 -2.91 -0.02 4.66 16 23 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 24 N -0.92 -50.85 13.05 21.67 0.28 -50.56 16 25 Si 0.99 44.44 29.55 68.60 2.03 46.47 16 26 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 27 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 28 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 29 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.05 1.54 7.68 -2.38 -0.02 1.52 16 32 H 0.10 3.02 8.14 -2.38 -0.02 3.00 16 33 H 0.08 3.43 6.76 -2.39 -0.02 3.41 16 34 H 0.22 3.14 8.06 -2.91 -0.02 3.12 16 35 H 0.21 2.73 4.60 -2.91 -0.01 2.72 16 36 H 0.08 0.66 7.43 -2.39 -0.02 0.65 16 37 H 0.10 0.77 8.03 -2.39 -0.02 0.75 16 38 H 0.08 1.16 5.27 -2.39 -0.01 1.15 16 39 H 0.12 1.21 8.07 -2.38 -0.02 1.19 16 40 H 0.06 1.47 7.50 -2.39 -0.02 1.45 16 41 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.05 1.01 8.13 -2.39 -0.02 0.99 16 43 H 0.05 0.98 7.45 -2.39 -0.02 0.96 16 44 H 0.34 12.87 8.17 -89.69 -0.73 12.13 16 45 H 0.10 3.12 8.06 -2.39 -0.02 3.10 16 46 H 0.06 1.90 7.44 -2.39 -0.02 1.89 16 47 H 0.39 20.03 7.90 -92.71 -0.73 19.30 16 48 H 0.28 14.27 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -81.17 392.21 2.22 -78.95 By element: Atomic # 1 Polarization: 48.91 SS G_CDS: -0.46 Total: 48.44 kcal Atomic # 6 Polarization: 17.65 SS G_CDS: 8.21 Total: 25.86 kcal Atomic # 7 Polarization: -134.99 SS G_CDS: -7.45 Total: -142.44 kcal Atomic # 8 Polarization: -57.18 SS G_CDS: -0.10 Total: -57.28 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -81.17 2.22 -78.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571384621.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.142 kcal (2) G-P(sol) polarization free energy of solvation -81.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds