Wall clock time and date at job start Tue Mar 31 2020 20:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46499 * 109.47117 * 2 1 4 4 N 1.28439 * 125.19041 * 264.74347 * 3 2 1 5 5 C 1.30862 * 110.92926 * 179.82134 * 4 3 2 6 6 C 1.39670 * 107.86161 * 0.44025 * 5 4 3 7 7 C 1.36597 * 125.19051 * 85.05521 * 3 2 1 8 8 C 1.47161 * 126.88367 * 359.97438 * 7 3 2 9 9 O 1.21629 * 120.00459 * 353.25824 * 8 7 3 10 10 N 1.34776 * 119.99898 * 173.25782 * 8 7 3 11 11 C 1.46499 * 120.00222 * 355.35571 * 10 8 7 12 12 C 1.46506 * 120.00153 * 175.35065 * 10 8 7 13 13 C 1.53004 * 109.46807 * 90.00001 * 12 10 8 14 14 H 1.08997 * 109.47064 * 295.00020 * 13 12 10 15 15 C 1.53006 * 109.46983 * 175.00066 * 13 12 10 16 16 N 1.46903 * 109.47000 * 55.00321 * 13 12 10 17 17 C 1.46898 * 110.99818 * 204.99698 * 16 13 12 18 18 C 1.50700 * 109.47352 * 179.97438 * 17 16 13 19 19 O 1.21291 * 119.99562 * 0.02562 * 18 17 16 20 20 N 1.34771 * 120.00509 * 179.97438 * 18 17 16 21 21 C 1.37092 * 120.00176 * 180.02562 * 20 18 17 22 22 H 1.08001 * 120.00224 * 0.02562 * 21 20 18 23 23 C 1.38952 * 119.99876 * 180.02562 * 21 20 18 24 24 N 1.31404 * 120.00131 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99941 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47044 * 0.02562 * 25 23 21 27 27 H 1.48493 * 109.47308 * 120.00249 * 25 23 21 28 28 H 1.48497 * 109.47108 * 240.00168 * 25 23 21 29 29 H 1.09000 * 109.47030 * 65.00169 * 1 2 3 30 30 H 1.09000 * 109.47216 * 185.00747 * 1 2 3 31 31 H 1.09003 * 109.46848 * 305.00631 * 1 2 3 32 32 H 1.08998 * 109.46573 * 239.99545 * 2 1 3 33 33 H 1.09001 * 109.46859 * 120.00095 * 2 1 3 34 34 H 1.08001 * 126.07112 * 180.15248 * 5 4 3 35 35 H 1.08002 * 127.32612 * 179.70937 * 6 5 4 36 36 H 1.09001 * 109.47338 * 85.53396 * 11 10 8 37 37 H 1.09006 * 109.47082 * 205.53948 * 11 10 8 38 38 H 1.09000 * 109.47174 * 325.53688 * 11 10 8 39 39 H 1.09002 * 109.47547 * 210.00175 * 12 10 8 40 40 H 1.08999 * 109.47161 * 330.00246 * 12 10 8 41 41 H 1.08994 * 109.46967 * 179.97438 * 15 13 12 42 42 H 1.09001 * 109.47075 * 300.00380 * 15 13 12 43 43 H 1.08999 * 109.46859 * 60.00336 * 15 13 12 44 44 H 1.00901 * 110.99756 * 81.04863 * 16 13 12 45 45 H 1.09003 * 109.47178 * 300.00552 * 17 16 13 46 46 H 1.09003 * 109.47036 * 60.00277 * 17 16 13 47 47 H 0.97005 * 119.99432 * 0.02562 * 20 18 17 48 48 H 0.96998 * 120.00344 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.3558 2.0470 -1.0452 5 6 2.7471 3.2539 -0.7246 6 6 2.6630 3.3767 0.6642 7 6 2.1901 2.1555 1.1122 8 6 1.9248 1.7688 2.5071 9 8 1.3932 0.7027 2.7522 10 7 2.2710 2.5962 3.5131 11 6 3.0021 3.8328 3.2260 12 6 1.9160 2.2589 4.8940 13 6 3.0424 1.4371 5.5238 14 1 3.1280 0.4815 5.0065 15 6 2.7295 1.1910 7.0012 16 7 4.3090 2.1722 5.4075 17 6 5.4550 1.2536 5.4322 18 6 6.7335 2.0419 5.3103 19 8 6.6939 3.2503 5.2129 20 7 7.9210 1.4045 5.3105 21 6 9.0841 2.1218 5.2001 22 1 9.0488 3.1977 5.1134 23 6 10.3083 1.4645 5.1998 24 7 10.3512 0.1554 5.3049 25 14 11.8931 2.4419 5.0501 26 1 11.5746 3.8886 4.9467 27 1 12.7356 2.2057 6.2499 28 1 12.6291 2.0085 3.8354 29 1 -0.3633 0.4343 -0.9314 30 1 -0.3633 -1.0237 0.0897 31 1 -0.3633 0.5896 0.8418 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.0808 4.0177 -1.4114 35 1 2.9142 4.2406 1.2616 36 1 2.2950 4.6221 2.9708 37 1 3.5752 4.1285 4.1048 38 1 3.6802 3.6679 2.3887 39 1 1.7711 3.1754 5.4661 40 1 0.9943 1.6771 4.9004 41 1 3.5317 0.6052 7.4498 42 1 2.6438 2.1466 7.5185 43 1 1.7897 0.6456 7.0875 44 1 4.3896 2.8705 6.1314 45 1 5.4569 0.7003 6.3714 46 1 5.3786 0.5549 4.5991 47 1 7.9526 0.4381 5.3888 48 1 11.2058 -0.3035 5.3050 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571384622.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:56 Heat of formation + Delta-G solvation = 29.706466 kcal Electronic energy + Delta-G solvation = -29971.320611 eV Core-core repulsion = 25871.136318 eV Total energy + Delta-G solvation = -4100.184292 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.61317 -39.70552 -38.35062 -36.86811 -35.37559 -34.30315 -33.89104 -31.69225 -31.19457 -30.37223 -29.86599 -27.37246 -26.55223 -26.11127 -24.13560 -23.90798 -22.36154 -21.81597 -20.67342 -19.40564 -19.22967 -17.90750 -17.29695 -16.62830 -16.32619 -15.97259 -15.77627 -15.37337 -15.04903 -14.74473 -14.66182 -14.46358 -14.31854 -13.93838 -13.78255 -13.50596 -13.18429 -13.05412 -12.87229 -12.77127 -12.47267 -12.26879 -12.17375 -12.14411 -11.73664 -11.65465 -11.53613 -11.42021 -11.33786 -11.07098 -10.99223 -10.57534 -10.35599 -10.23641 -10.01898 -9.52909 -9.26212 -9.03207 -8.78226 -8.39251 -8.01243 -7.95309 -6.42720 -3.83596 1.24998 2.28268 2.59236 3.05102 3.15377 3.21934 3.26052 3.32899 3.90000 4.08409 4.31625 4.37121 4.42647 4.80876 4.86414 4.91856 5.02258 5.07429 5.10878 5.14446 5.22762 5.30289 5.34543 5.39323 5.44605 5.46799 5.50769 5.65812 5.67608 5.69636 5.71816 5.75290 5.87687 5.91460 6.03025 6.06253 6.14910 6.26486 6.42161 6.51363 6.69133 7.16708 7.32752 7.54151 7.65593 7.96694 8.05290 8.11468 8.59805 9.16746 9.53482 10.04299 10.75098 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011410 B = 0.002947 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.335498 B = 9500.051263 C =10676.057096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.117 3.883 3 N -0.257 5.257 4 N -0.281 5.281 5 C -0.008 4.008 6 C -0.202 4.202 7 C -0.032 4.032 8 C 0.588 3.412 9 O -0.551 6.551 10 N -0.574 5.574 11 C 0.066 3.934 12 C 0.134 3.866 13 C 0.064 3.936 14 H 0.082 0.918 15 C -0.181 4.181 16 N -0.658 5.658 17 C 0.053 3.947 18 C 0.442 3.558 19 O -0.584 6.584 20 N -0.564 5.564 21 C -0.298 4.298 22 H 0.104 0.896 23 C 0.022 3.978 24 N -0.901 5.901 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.281 1.281 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.097 0.903 33 H 0.109 0.891 34 H 0.185 0.815 35 H 0.180 0.820 36 H 0.051 0.949 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.347 0.653 45 H 0.042 0.958 46 H 0.081 0.919 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.886 1.660 -4.885 20.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.003 4.003 3 N -0.045 5.045 4 N -0.114 5.114 5 C -0.184 4.184 6 C -0.231 4.231 7 C -0.160 4.160 8 C 0.375 3.625 9 O -0.430 6.430 10 N -0.304 5.304 11 C -0.076 4.076 12 C 0.010 3.990 13 C -0.048 4.048 14 H 0.100 0.900 15 C -0.240 4.240 16 N -0.290 5.290 17 C -0.080 4.080 18 C 0.228 3.772 19 O -0.468 6.468 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.207 1.207 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.115 0.885 33 H 0.127 0.873 34 H 0.202 0.798 35 H 0.197 0.803 36 H 0.069 0.931 37 H 0.113 0.887 38 H 0.105 0.895 39 H 0.098 0.902 40 H 0.103 0.897 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.167 0.833 45 H 0.060 0.940 46 H 0.100 0.900 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -20.247 0.971 -6.404 21.257 hybrid contribution 1.244 0.031 1.566 2.000 sum -19.003 1.002 -4.838 19.635 Atomic orbital electron populations 1.22058 0.93490 1.03471 1.02800 1.22061 0.96091 0.76735 1.05366 1.45812 1.44335 1.12331 1.02065 1.73168 1.17059 1.07175 1.13966 1.23628 1.04957 0.94444 0.95355 1.23134 1.05870 0.98431 0.95637 1.21362 1.11118 0.93690 0.89851 1.16928 0.78713 0.83738 0.83124 1.90756 1.45156 1.22424 1.84694 1.47154 1.54946 1.22522 1.05798 1.22522 0.95787 0.84332 1.04983 1.21546 0.97024 0.99904 0.80498 1.22035 0.90517 0.97721 0.94529 0.89999 1.22451 1.02282 1.02201 0.97086 1.60192 0.99497 1.14819 1.54489 1.21665 0.90709 0.94966 1.00655 1.19793 0.84451 0.88521 0.84458 1.90502 1.86893 1.14086 1.55356 1.41879 1.04683 1.09669 1.63821 1.19738 0.82628 0.93454 1.46965 0.87863 1.25267 0.99593 0.95766 0.97358 1.69617 1.27029 1.07207 1.50435 0.85809 0.81046 0.79803 0.77744 1.19192 1.20791 1.20739 0.92216 0.90248 0.91381 0.88469 0.87263 0.79801 0.80350 0.93087 0.88690 0.89453 0.90206 0.89681 0.92202 0.92203 0.92019 0.83297 0.93956 0.90048 0.77530 0.91924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 10.13 37.16 0.38 -1.12 16 2 C 0.12 1.28 6.32 -4.04 -0.03 1.26 16 3 N -0.26 -3.43 3.35 -57.14 -0.19 -3.62 16 4 N -0.28 -3.81 11.90 30.59 0.36 -3.45 16 5 C -0.01 -0.09 12.03 -17.43 -0.21 -0.30 16 6 C -0.20 -2.39 8.88 -38.98 -0.35 -2.74 16 7 C -0.03 -0.43 6.79 -82.06 -0.56 -0.99 16 8 C 0.59 8.17 7.64 -12.64 -0.10 8.07 16 9 O -0.55 -8.41 13.96 5.25 0.07 -8.34 16 10 N -0.57 -6.97 2.73 -182.94 -0.50 -7.47 16 11 C 0.07 0.73 8.25 59.85 0.49 1.22 16 12 C 0.13 1.43 5.09 -4.04 -0.02 1.41 16 13 C 0.06 0.76 2.89 -67.71 -0.20 0.56 16 14 H 0.08 1.13 7.80 -51.93 -0.41 0.73 16 15 C -0.18 -1.79 9.16 37.16 0.34 -1.45 16 16 N -0.66 -9.64 4.22 -107.98 -0.46 -10.09 16 17 C 0.05 0.91 5.96 -4.98 -0.03 0.88 16 18 C 0.44 10.15 7.82 -10.99 -0.09 10.06 16 19 O -0.58 -15.07 15.78 5.55 0.09 -14.98 16 20 N -0.56 -14.19 5.29 -10.97 -0.06 -14.25 16 21 C -0.30 -8.25 9.68 -14.93 -0.14 -8.40 16 22 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.59 13.05 55.50 0.72 -23.87 16 25 Si 0.93 20.97 29.55 -169.99 -5.02 15.95 16 26 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 28 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.75 7.65 -51.93 -0.40 0.36 16 32 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.11 1.28 6.77 -51.93 -0.35 0.93 16 34 H 0.18 1.55 8.06 -52.49 -0.42 1.13 16 35 H 0.18 1.70 4.60 -52.49 -0.24 1.46 16 36 H 0.05 0.44 7.57 -51.93 -0.39 0.04 16 37 H 0.09 1.16 7.04 -51.93 -0.37 0.79 16 38 H 0.09 1.06 5.03 -51.93 -0.26 0.79 16 39 H 0.08 0.71 8.07 -51.93 -0.42 0.29 16 40 H 0.08 0.90 7.49 -51.93 -0.39 0.51 16 41 H 0.06 0.64 7.45 -51.93 -0.39 0.26 16 42 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.35 5.16 8.17 -39.29 -0.32 4.84 16 45 H 0.04 0.67 7.44 -51.93 -0.39 0.29 16 46 H 0.08 1.41 8.06 -51.93 -0.42 0.99 16 47 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 48 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 392.57 15.07 5.92 5.92 Total: -1.00 -32.97 392.57 -6.77 -39.73 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: -7.11 Total: 15.52 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: -0.60 Total: 8.95 kcal Atomic # 7 Polarization: -62.63 SS G_CDS: -0.12 Total: -62.74 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: 0.16 Total: -23.32 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.97 -6.77 -39.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571384622.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.437 kcal (2) G-P(sol) polarization free energy of solvation -32.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds