Wall clock time and date at job start Tue Mar 31 2020 20:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46499 * 109.47117 * 2 1 4 4 N 1.28439 * 125.19041 * 264.74347 * 3 2 1 5 5 C 1.30862 * 110.92926 * 179.82134 * 4 3 2 6 6 C 1.39670 * 107.86161 * 0.44025 * 5 4 3 7 7 C 1.36597 * 125.19051 * 85.05521 * 3 2 1 8 8 C 1.47161 * 126.88367 * 359.97438 * 7 3 2 9 9 O 1.21629 * 120.00459 * 353.25824 * 8 7 3 10 10 N 1.34776 * 119.99898 * 173.25782 * 8 7 3 11 11 C 1.46499 * 120.00222 * 355.35571 * 10 8 7 12 12 C 1.46506 * 120.00153 * 175.35065 * 10 8 7 13 13 C 1.53004 * 109.46807 * 90.00001 * 12 10 8 14 14 H 1.08997 * 109.47064 * 295.00020 * 13 12 10 15 15 C 1.53006 * 109.46983 * 175.00066 * 13 12 10 16 16 N 1.46903 * 109.47000 * 55.00321 * 13 12 10 17 17 C 1.46898 * 110.99818 * 204.99698 * 16 13 12 18 18 C 1.50700 * 109.47352 * 179.97438 * 17 16 13 19 19 O 1.21291 * 119.99562 * 0.02562 * 18 17 16 20 20 N 1.34771 * 120.00509 * 179.97438 * 18 17 16 21 21 C 1.37092 * 120.00176 * 180.02562 * 20 18 17 22 22 H 1.08001 * 120.00224 * 0.02562 * 21 20 18 23 23 C 1.38952 * 119.99876 * 180.02562 * 21 20 18 24 24 N 1.31404 * 120.00131 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99941 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47044 * 0.02562 * 25 23 21 27 27 H 1.48493 * 109.47308 * 120.00249 * 25 23 21 28 28 H 1.48497 * 109.47108 * 240.00168 * 25 23 21 29 29 H 1.09000 * 109.47030 * 65.00169 * 1 2 3 30 30 H 1.09000 * 109.47216 * 185.00747 * 1 2 3 31 31 H 1.09003 * 109.46848 * 305.00631 * 1 2 3 32 32 H 1.08998 * 109.46573 * 239.99545 * 2 1 3 33 33 H 1.09001 * 109.46859 * 120.00095 * 2 1 3 34 34 H 1.08001 * 126.07112 * 180.15248 * 5 4 3 35 35 H 1.08002 * 127.32612 * 179.70937 * 6 5 4 36 36 H 1.09001 * 109.47338 * 85.53396 * 11 10 8 37 37 H 1.09006 * 109.47082 * 205.53948 * 11 10 8 38 38 H 1.09000 * 109.47174 * 325.53688 * 11 10 8 39 39 H 1.09002 * 109.47547 * 210.00175 * 12 10 8 40 40 H 1.08999 * 109.47161 * 330.00246 * 12 10 8 41 41 H 1.08994 * 109.46967 * 179.97438 * 15 13 12 42 42 H 1.09001 * 109.47075 * 300.00380 * 15 13 12 43 43 H 1.08999 * 109.46859 * 60.00336 * 15 13 12 44 44 H 1.00901 * 110.99756 * 81.04863 * 16 13 12 45 45 H 1.09003 * 109.47178 * 300.00552 * 17 16 13 46 46 H 1.09003 * 109.47036 * 60.00277 * 17 16 13 47 47 H 0.97005 * 119.99432 * 0.02562 * 20 18 17 48 48 H 0.96998 * 120.00344 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.3558 2.0470 -1.0452 5 6 2.7471 3.2539 -0.7246 6 6 2.6630 3.3767 0.6642 7 6 2.1901 2.1555 1.1122 8 6 1.9248 1.7688 2.5071 9 8 1.3932 0.7027 2.7522 10 7 2.2710 2.5962 3.5131 11 6 3.0021 3.8328 3.2260 12 6 1.9160 2.2589 4.8940 13 6 3.0424 1.4371 5.5238 14 1 3.1280 0.4815 5.0065 15 6 2.7295 1.1910 7.0012 16 7 4.3090 2.1722 5.4075 17 6 5.4550 1.2536 5.4322 18 6 6.7335 2.0419 5.3103 19 8 6.6939 3.2503 5.2129 20 7 7.9210 1.4045 5.3105 21 6 9.0841 2.1218 5.2001 22 1 9.0488 3.1977 5.1134 23 6 10.3083 1.4645 5.1998 24 7 10.3512 0.1554 5.3049 25 14 11.8931 2.4419 5.0501 26 1 11.5746 3.8886 4.9467 27 1 12.7356 2.2057 6.2499 28 1 12.6291 2.0085 3.8354 29 1 -0.3633 0.4343 -0.9314 30 1 -0.3633 -1.0237 0.0897 31 1 -0.3633 0.5896 0.8418 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.0808 4.0177 -1.4114 35 1 2.9142 4.2406 1.2616 36 1 2.2950 4.6221 2.9708 37 1 3.5752 4.1285 4.1048 38 1 3.6802 3.6679 2.3887 39 1 1.7711 3.1754 5.4661 40 1 0.9943 1.6771 4.9004 41 1 3.5317 0.6052 7.4498 42 1 2.6438 2.1466 7.5185 43 1 1.7897 0.6456 7.0875 44 1 4.3896 2.8705 6.1314 45 1 5.4569 0.7003 6.3714 46 1 5.3786 0.5549 4.5991 47 1 7.9526 0.4381 5.3888 48 1 11.2058 -0.3035 5.3050 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571384622.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:56 Heat of formation + Delta-G solvation = 6.473010 kcal Electronic energy + Delta-G solvation = -29972.328089 eV Core-core repulsion = 25871.136318 eV Total energy + Delta-G solvation = -4101.191771 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.54956 -40.74214 -40.09331 -38.05829 -36.43324 -35.87339 -35.18605 -33.29888 -32.68710 -31.44136 -30.73221 -28.31161 -27.93495 -27.27274 -25.71769 -24.89936 -23.33189 -22.76278 -21.66893 -21.07970 -20.30243 -19.90777 -18.27088 -17.85852 -17.51168 -17.14659 -16.95368 -16.61587 -16.38191 -16.15292 -15.89754 -15.63859 -15.53275 -15.21702 -14.96123 -14.75351 -14.47047 -14.00364 -13.91075 -13.72317 -13.57126 -13.54356 -13.38676 -13.13550 -13.05914 -12.94152 -12.81492 -12.54825 -12.48558 -12.38064 -12.22715 -12.10413 -11.93483 -11.51365 -11.50018 -11.05987 -10.35427 -10.23616 -10.00855 -9.96205 -9.70922 -9.14469 -8.46340 -5.94888 0.26635 1.36731 1.38497 1.42001 1.56179 1.67367 2.05958 2.10987 2.23341 2.29288 2.92222 3.21246 3.41779 3.55814 3.57130 3.93525 4.00988 4.09599 4.13266 4.23583 4.27890 4.31228 4.32915 4.43474 4.44854 4.54452 4.56073 4.63077 4.69189 4.69661 4.83401 4.84789 4.86411 4.91954 5.00813 5.10064 5.22034 5.24610 5.41601 5.53351 5.60905 5.78198 5.88018 6.08349 6.33629 6.48890 6.59706 6.99295 7.12953 7.13744 7.56847 8.10901 8.71497 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011410 B = 0.002947 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.335498 B = 9500.051263 C =10676.057096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.112 3.888 3 N -0.267 5.267 4 N -0.302 5.302 5 C -0.012 4.012 6 C -0.199 4.199 7 C -0.056 4.056 8 C 0.581 3.419 9 O -0.572 6.572 10 N -0.573 5.573 11 C 0.068 3.932 12 C 0.133 3.867 13 C 0.069 3.931 14 H 0.062 0.938 15 C -0.173 4.173 16 N -0.661 5.661 17 C 0.069 3.931 18 C 0.443 3.557 19 O -0.613 6.613 20 N -0.577 5.577 21 C -0.329 4.329 22 H 0.082 0.918 23 C -0.016 4.016 24 N -0.924 5.924 25 Si 0.993 3.007 26 H -0.270 1.270 27 H -0.272 1.272 28 H -0.273 1.273 29 H 0.062 0.938 30 H 0.100 0.900 31 H 0.048 0.952 32 H 0.111 0.889 33 H 0.097 0.903 34 H 0.215 0.785 35 H 0.200 0.800 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.104 0.896 40 H 0.089 0.911 41 H 0.050 0.950 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.348 0.652 45 H 0.062 0.938 46 H 0.083 0.917 47 H 0.393 0.607 48 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.443 2.332 -4.699 21.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.008 4.008 3 N -0.056 5.056 4 N -0.135 5.135 5 C -0.188 4.188 6 C -0.227 4.227 7 C -0.184 4.184 8 C 0.368 3.632 9 O -0.454 6.454 10 N -0.302 5.302 11 C -0.074 4.074 12 C 0.011 3.989 13 C -0.042 4.042 14 H 0.080 0.920 15 C -0.233 4.233 16 N -0.293 5.293 17 C -0.063 4.063 18 C 0.230 3.770 19 O -0.499 6.499 20 N -0.214 5.214 21 C -0.458 4.458 22 H 0.100 0.900 23 C -0.215 4.215 24 N -0.565 5.565 25 Si 0.816 3.184 26 H -0.194 1.194 27 H -0.197 1.197 28 H -0.199 1.199 29 H 0.081 0.919 30 H 0.118 0.882 31 H 0.067 0.933 32 H 0.129 0.871 33 H 0.115 0.885 34 H 0.231 0.769 35 H 0.216 0.784 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.094 0.906 39 H 0.123 0.877 40 H 0.107 0.893 41 H 0.069 0.931 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.168 0.832 45 H 0.080 0.920 46 H 0.101 0.899 47 H 0.227 0.773 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -20.825 1.635 -6.205 21.791 hybrid contribution 1.361 -0.155 1.503 2.033 sum -19.464 1.480 -4.702 20.078 Atomic orbital electron populations 1.21978 0.92324 1.04422 1.01992 1.22195 0.97050 0.76134 1.05379 1.46045 1.44580 1.12926 1.02004 1.73144 1.17826 1.08069 1.14429 1.24214 1.04087 0.94486 0.95967 1.23469 1.04840 0.98465 0.95952 1.21586 1.12240 0.94638 0.89937 1.17097 0.78704 0.83718 0.83635 1.90732 1.46308 1.23284 1.85041 1.47268 1.54372 1.22495 1.06033 1.22548 0.96199 0.84617 1.04037 1.21666 0.96416 1.00940 0.79922 1.22012 0.89451 0.96681 0.96011 0.91991 1.22369 1.02695 1.03023 0.95180 1.60169 0.99590 1.14694 1.54871 1.21444 0.88754 0.94509 1.01628 1.20731 0.85498 0.88535 0.82195 1.90474 1.87606 1.15719 1.56078 1.41970 1.04972 1.09666 1.64806 1.19712 0.84275 0.92878 1.48967 0.89977 1.26057 1.02208 0.96770 0.96477 1.69685 1.28072 1.08231 1.50516 0.84870 0.77141 0.78177 0.78177 1.19421 1.19695 1.19890 0.91929 0.88179 0.93296 0.87106 0.88507 0.76890 0.78375 0.90100 0.89686 0.90627 0.87747 0.89306 0.93054 0.90870 0.90480 0.83199 0.92046 0.89914 0.77335 0.91428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 10.13 71.98 0.73 -2.02 16 2 C 0.11 2.46 6.32 86.38 0.55 3.00 16 3 N -0.27 -7.12 3.35 -334.68 -1.12 -8.24 16 4 N -0.30 -8.02 11.90 -57.14 -0.68 -8.70 16 5 C -0.01 -0.27 12.03 85.18 1.02 0.75 16 6 C -0.20 -4.50 8.88 22.66 0.20 -4.29 16 7 C -0.06 -1.50 6.79 40.79 0.28 -1.23 16 8 C 0.58 16.00 7.64 86.59 0.66 16.66 16 9 O -0.57 -17.60 13.96 -4.12 -0.06 -17.65 16 10 N -0.57 -13.26 2.73 -850.95 -2.32 -15.58 16 11 C 0.07 1.40 8.25 127.77 1.05 2.45 16 12 C 0.13 2.62 5.09 86.38 0.44 3.06 16 13 C 0.07 1.56 2.89 44.92 0.13 1.69 16 14 H 0.06 1.67 7.80 -2.39 -0.02 1.65 16 15 C -0.17 -3.05 9.16 71.98 0.66 -2.39 16 16 N -0.66 -18.68 4.22 -495.55 -2.09 -20.77 16 17 C 0.07 2.36 5.96 85.56 0.51 2.87 16 18 C 0.44 20.48 7.82 87.66 0.69 21.16 16 19 O -0.61 -31.94 15.78 -3.06 -0.05 -31.99 16 20 N -0.58 -29.49 5.29 -306.99 -1.62 -31.11 16 21 C -0.33 -18.50 9.68 84.04 0.81 -17.69 16 22 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 23 C -0.02 -0.85 5.50 84.93 0.47 -0.38 16 24 N -0.92 -50.29 13.05 21.66 0.28 -50.00 16 25 Si 0.99 42.80 29.55 68.60 2.03 44.83 16 26 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 27 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 28 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 29 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.05 1.09 7.65 -2.39 -0.02 1.07 16 32 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.10 2.35 6.77 -2.39 -0.02 2.33 16 34 H 0.21 3.16 8.06 -2.91 -0.02 3.14 16 35 H 0.20 3.45 4.60 -2.91 -0.01 3.43 16 36 H 0.08 1.18 7.57 -2.39 -0.02 1.17 16 37 H 0.08 1.96 7.04 -2.38 -0.02 1.94 16 38 H 0.08 1.75 5.03 -2.39 -0.01 1.74 16 39 H 0.10 1.56 8.07 -2.39 -0.02 1.54 16 40 H 0.09 1.73 7.49 -2.39 -0.02 1.72 16 41 H 0.05 1.00 7.45 -2.39 -0.02 0.99 16 42 H 0.07 1.11 8.13 -2.39 -0.02 1.09 16 43 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.35 9.88 8.17 -89.69 -0.73 9.15 16 45 H 0.06 1.88 7.44 -2.39 -0.02 1.86 16 46 H 0.08 2.83 8.06 -2.39 -0.02 2.82 16 47 H 0.39 19.48 7.90 -92.70 -0.73 18.75 16 48 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 Total: -1.00 -71.63 392.57 2.11 -69.53 By element: Atomic # 1 Polarization: 46.50 SS G_CDS: -0.46 Total: 46.04 kcal Atomic # 6 Polarization: 15.45 SS G_CDS: 8.20 Total: 23.65 kcal Atomic # 7 Polarization: -126.85 SS G_CDS: -7.55 Total: -134.40 kcal Atomic # 8 Polarization: -49.54 SS G_CDS: -0.11 Total: -49.65 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -71.63 2.11 -69.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571384622.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.999 kcal (2) G-P(sol) polarization free energy of solvation -71.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds