Wall clock time and date at job start Tue Mar 31 2020 20:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47379 * 2 1 4 4 C 1.35852 * 126.13326 * 269.97173 * 3 2 1 5 5 N 1.30176 * 109.00010 * 179.78381 * 4 3 2 6 6 C 1.35762 * 108.86852 * 0.38344 * 5 4 3 7 7 C 1.47315 * 126.23400 * 179.88661 * 6 5 4 8 8 O 1.21629 * 120.00127 * 185.59705 * 7 6 5 9 9 N 1.34771 * 120.00272 * 5.59285 * 7 6 5 10 10 C 1.46496 * 119.99848 * 356.12755 * 9 7 6 11 11 C 1.46503 * 120.00444 * 176.12948 * 9 7 6 12 12 C 1.53005 * 109.47238 * 89.99597 * 11 9 7 13 13 H 1.09000 * 109.47043 * 65.00572 * 12 11 9 14 14 C 1.53001 * 109.47069 * 185.00472 * 12 11 9 15 15 N 1.46899 * 109.47092 * 305.00573 * 12 11 9 16 16 C 1.46900 * 110.99816 * 154.99937 * 15 12 11 17 17 C 1.50701 * 109.47130 * 179.97438 * 16 15 12 18 18 O 1.21294 * 119.99869 * 359.97438 * 17 16 15 19 19 N 1.34772 * 120.00268 * 179.97438 * 17 16 15 20 20 C 1.37097 * 120.00261 * 180.02562 * 19 17 16 21 21 H 1.08000 * 119.99879 * 359.97438 * 20 19 17 22 22 C 1.38955 * 120.00053 * 180.02562 * 20 19 17 23 23 N 1.31416 * 119.99804 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00069 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47067 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47415 * 119.99677 * 24 22 20 27 27 H 1.48496 * 109.47352 * 239.99764 * 24 22 20 28 28 C 1.35381 * 126.13649 * 90.00062 * 3 2 1 29 29 H 1.09001 * 109.46770 * 59.99894 * 1 2 3 30 30 H 1.08995 * 109.47533 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47004 * 300.00677 * 1 2 3 32 32 H 1.09000 * 109.47520 * 239.99286 * 2 1 3 33 33 H 1.09001 * 109.46770 * 120.00106 * 2 1 3 34 34 H 1.07996 * 125.49753 * 0.02562 * 4 3 2 35 35 H 1.08998 * 109.47362 * 275.69962 * 10 9 7 36 36 H 1.08996 * 109.47430 * 35.70375 * 10 9 7 37 37 H 1.09008 * 109.47004 * 155.70546 * 10 9 7 38 38 H 1.09007 * 109.46817 * 330.00554 * 11 9 7 39 39 H 1.08990 * 109.47514 * 209.99916 * 11 9 7 40 40 H 1.09003 * 109.46900 * 180.02562 * 14 12 11 41 41 H 1.08995 * 109.46960 * 299.99911 * 14 12 11 42 42 H 1.09000 * 109.47106 * 60.00139 * 14 12 11 43 43 H 1.00899 * 111.00025 * 278.94800 * 15 12 11 44 44 H 1.08998 * 109.47143 * 299.99427 * 16 15 12 45 45 H 1.08994 * 109.47239 * 59.99829 * 16 15 12 46 46 H 0.97005 * 120.00088 * 0.02562 * 19 17 16 47 47 H 0.96997 * 119.99362 * 180.02562 * 23 22 20 48 48 H 1.07999 * 126.56169 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2859 2.1362 -1.0972 5 7 2.6961 3.3107 -0.7137 6 6 2.7143 3.3479 0.6433 7 6 3.1184 4.4927 1.4776 8 8 3.1889 4.3700 2.6856 9 7 3.4101 5.6761 0.9024 10 6 3.4079 5.8014 -0.5572 11 6 3.7294 6.8373 1.7367 12 6 5.2370 6.8812 1.9942 13 1 5.7615 7.0491 1.0535 14 6 5.5555 8.0193 2.9659 15 7 5.6718 5.6043 2.5761 16 6 7.0934 5.3573 2.3006 17 6 7.5024 4.0420 2.9121 18 8 6.6896 3.3762 3.5181 19 7 8.7712 3.6055 2.7855 20 6 9.1431 2.4087 3.3413 21 1 8.4194 1.8159 3.8810 22 6 10.4514 1.9590 3.2112 23 7 11.3321 2.6806 2.5550 24 14 10.9583 0.3287 3.9692 25 1 9.7900 -0.2853 4.6498 26 1 11.4457 -0.5827 2.9029 27 1 12.0423 0.5581 4.9578 28 6 2.2845 2.1338 1.0934 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8932 -0.5139 0.8900 34 1 2.1726 1.8153 -2.1221 35 1 4.3716 5.4786 -0.9510 36 1 2.6175 5.1773 -0.9742 37 1 3.2329 6.8415 -0.8323 38 1 3.2009 6.7584 2.6868 39 1 3.4217 7.7486 1.2242 40 1 6.6296 8.0508 3.1489 41 1 5.2330 8.9666 2.5341 42 1 5.0311 7.8513 3.9065 43 1 5.4855 5.5766 3.5673 44 1 7.2541 5.3229 1.2231 45 1 7.6919 6.1597 2.7318 46 1 9.4213 4.1381 2.3011 47 1 12.2452 2.3664 2.4639 48 1 2.1771 1.8312 2.1245 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571413689.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:08 Heat of formation + Delta-G solvation = 8.052452 kcal Electronic energy + Delta-G solvation = -29876.701434 eV Core-core repulsion = 25775.578153 eV Total energy + Delta-G solvation = -4101.123281 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.14785 -39.17346 -38.08109 -36.41080 -35.21129 -34.47469 -33.71031 -31.18930 -30.77253 -30.38528 -29.52684 -27.12452 -26.08940 -25.82868 -24.13101 -23.74858 -22.42854 -20.99136 -20.52307 -19.26733 -18.94568 -17.76341 -17.34640 -16.17656 -16.09530 -15.61750 -15.59824 -15.07797 -14.82919 -14.68969 -14.44346 -14.23576 -14.08569 -13.78723 -13.72732 -13.35228 -13.14581 -12.88963 -12.74107 -12.52659 -12.36924 -12.29346 -12.15466 -11.97621 -11.88248 -11.72201 -11.48069 -11.36017 -11.14082 -10.96404 -10.73711 -10.27811 -10.11996 -9.93949 -9.76153 -9.39844 -9.36493 -8.53240 -8.31826 -8.07254 -7.83588 -7.62627 -6.30994 -3.70722 1.81215 2.56959 2.57248 3.22328 3.31486 3.39552 3.46312 4.00977 4.08105 4.22717 4.30384 4.47752 4.54766 4.56755 4.68515 4.86884 5.09083 5.11338 5.22806 5.24413 5.26291 5.35024 5.37519 5.48897 5.51504 5.53985 5.61460 5.65425 5.81267 5.89697 5.95008 6.03187 6.07253 6.08486 6.20268 6.24993 6.29398 6.45137 6.59240 6.94108 7.11853 7.54633 7.65453 7.77225 7.96449 8.02936 8.19895 8.75728 8.82978 9.30637 9.68696 10.22341 10.87472 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008361 B = 0.003613 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3348.069911 B = 7748.807655 C =10298.996669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.098 3.902 3 N -0.457 5.457 4 C 0.175 3.825 5 N -0.462 5.462 6 C -0.047 4.047 7 C 0.610 3.390 8 O -0.515 6.515 9 N -0.598 5.598 10 C 0.080 3.920 11 C 0.132 3.868 12 C 0.065 3.935 13 H 0.074 0.926 14 C -0.181 4.181 15 N -0.646 5.646 16 C 0.052 3.948 17 C 0.445 3.555 18 O -0.572 6.572 19 N -0.571 5.571 20 C -0.293 4.293 21 H 0.102 0.898 22 C 0.019 3.981 23 N -0.905 5.905 24 Si 0.927 3.073 25 H -0.269 1.269 26 H -0.283 1.283 27 H -0.282 1.282 28 C 0.033 3.967 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.206 0.794 35 H 0.047 0.953 36 H 0.102 0.898 37 H 0.050 0.950 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.352 0.648 44 H 0.079 0.921 45 H 0.038 0.962 46 H 0.391 0.609 47 H 0.269 0.731 48 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.336 3.250 -9.914 22.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.025 4.025 3 N -0.140 5.140 4 C -0.108 4.108 5 N -0.181 5.181 6 C -0.176 4.176 7 C 0.397 3.603 8 O -0.389 6.389 9 N -0.330 5.330 10 C -0.064 4.064 11 C 0.009 3.991 12 C -0.047 4.047 13 H 0.092 0.908 14 C -0.241 4.241 15 N -0.278 5.278 16 C -0.080 4.080 17 C 0.230 3.770 18 O -0.455 6.455 19 N -0.209 5.209 20 C -0.423 4.423 21 H 0.119 0.881 22 C -0.182 4.182 23 N -0.548 5.548 24 Si 0.755 3.245 25 H -0.193 1.193 26 H -0.209 1.209 27 H -0.208 1.208 28 C -0.105 4.105 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.115 0.885 33 H 0.114 0.886 34 H 0.222 0.778 35 H 0.066 0.934 36 H 0.120 0.880 37 H 0.069 0.931 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.173 0.827 44 H 0.097 0.903 45 H 0.056 0.944 46 H 0.224 0.776 47 H 0.079 0.921 48 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -20.703 2.824 -9.916 23.128 hybrid contribution 1.304 -0.546 0.868 1.659 sum -19.400 2.277 -9.047 21.526 Atomic orbital electron populations 1.22167 0.93973 1.03246 1.03318 1.21936 0.95609 0.79691 1.05215 1.45457 1.48678 1.12968 1.06909 1.25197 1.04204 0.87883 0.93485 1.70702 1.18223 1.18524 1.10690 1.20663 1.10921 0.95852 0.90179 1.16640 0.76542 0.80887 0.86201 1.90797 1.52055 1.82409 1.13676 1.47217 1.69282 1.09687 1.06819 1.22107 1.03690 1.00971 0.79585 1.21444 0.94674 0.87143 0.95879 1.22025 0.96405 0.88450 0.97806 0.90780 1.22481 1.01996 0.99244 1.00384 1.60076 1.16225 1.30545 1.20987 1.21673 0.89477 0.96151 1.00749 1.19897 0.83269 0.88250 0.85576 1.90558 1.51052 1.58381 1.45471 1.41874 1.08806 1.20560 1.49639 1.19737 0.95187 0.96707 1.30624 0.88055 1.25227 0.95643 0.99616 0.97698 1.69631 1.04275 1.38607 1.42248 0.85828 0.78577 0.81522 0.78582 1.19316 1.20877 1.20848 1.22578 1.03040 0.91743 0.93127 0.91779 0.90456 0.91681 0.88543 0.88618 0.77765 0.93445 0.87972 0.93094 0.90259 0.90887 0.92450 0.92362 0.92203 0.82713 0.90287 0.94427 0.77644 0.92131 0.79805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.84 10.24 37.16 0.38 -0.46 16 2 C 0.10 0.61 6.84 -4.05 -0.03 0.59 16 3 N -0.46 -4.77 2.73 -118.36 -0.32 -5.10 16 4 C 0.18 1.87 12.55 -89.90 -1.13 0.74 16 5 N -0.46 -6.46 7.77 -11.03 -0.09 -6.54 16 6 C -0.05 -0.77 6.67 -83.09 -0.55 -1.32 16 7 C 0.61 11.01 7.07 -12.57 -0.09 10.92 16 8 O -0.52 -10.87 15.43 5.25 0.08 -10.79 16 9 N -0.60 -9.02 2.78 -182.89 -0.51 -9.53 16 10 C 0.08 1.01 9.68 59.84 0.58 1.59 16 11 C 0.13 1.75 5.23 -4.04 -0.02 1.73 16 12 C 0.07 0.92 2.89 -67.71 -0.20 0.72 16 13 H 0.07 1.03 7.80 -51.93 -0.40 0.62 16 14 C -0.18 -2.15 9.16 37.16 0.34 -1.80 16 15 N -0.65 -12.12 3.99 -107.99 -0.43 -12.55 16 16 C 0.05 1.05 5.97 -4.98 -0.03 1.02 16 17 C 0.44 11.47 7.82 -10.99 -0.09 11.39 16 18 O -0.57 -16.92 15.78 5.55 0.09 -16.84 16 19 N -0.57 -15.49 5.29 -10.96 -0.06 -15.55 16 20 C -0.29 -8.62 9.68 -14.93 -0.14 -8.76 16 21 H 0.10 3.14 7.16 -52.49 -0.38 2.77 16 22 C 0.02 0.53 5.50 -17.46 -0.10 0.43 16 23 N -0.91 -25.72 13.05 55.50 0.72 -24.99 16 24 Si 0.93 21.94 29.55 -169.99 -5.02 16.91 16 25 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 C 0.03 0.46 11.27 -16.64 -0.19 0.27 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.21 1.30 8.06 -52.49 -0.42 0.88 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.10 1.32 5.22 -51.93 -0.27 1.04 16 37 H 0.05 0.50 7.83 -51.92 -0.41 0.10 16 38 H 0.08 1.13 7.48 -51.93 -0.39 0.75 16 39 H 0.07 0.73 7.86 -51.93 -0.41 0.33 16 40 H 0.06 0.71 7.45 -51.93 -0.39 0.33 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 43 H 0.35 7.20 8.17 -39.29 -0.32 6.88 16 44 H 0.08 1.51 8.06 -51.93 -0.42 1.09 16 45 H 0.04 0.68 7.44 -51.93 -0.39 0.30 16 46 H 0.39 10.16 7.90 -40.82 -0.32 9.84 16 47 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 48 H 0.18 2.44 8.06 -52.49 -0.42 2.02 16 LS Contribution 400.14 15.07 6.03 6.03 Total: -1.00 -37.61 400.14 -8.22 -45.83 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: -7.45 Total: 16.07 kcal Atomic # 6 Polarization: 18.31 SS G_CDS: -1.26 Total: 17.05 kcal Atomic # 7 Polarization: -73.58 SS G_CDS: -0.68 Total: -74.26 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: 0.17 Total: -27.63 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -37.61 -8.22 -45.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571413689.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.883 kcal (2) G-P(sol) polarization free energy of solvation -37.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds