Wall clock time and date at job start Tue Mar 31 2020 20:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47379 * 2 1 4 4 C 1.35852 * 126.13326 * 269.97173 * 3 2 1 5 5 N 1.30176 * 109.00010 * 179.78381 * 4 3 2 6 6 C 1.35762 * 108.86852 * 0.38344 * 5 4 3 7 7 C 1.47315 * 126.23400 * 179.88661 * 6 5 4 8 8 O 1.21629 * 120.00127 * 185.59705 * 7 6 5 9 9 N 1.34771 * 120.00272 * 5.59285 * 7 6 5 10 10 C 1.46496 * 119.99848 * 356.12755 * 9 7 6 11 11 C 1.46503 * 120.00444 * 176.12948 * 9 7 6 12 12 C 1.53005 * 109.47238 * 89.99597 * 11 9 7 13 13 H 1.09000 * 109.47043 * 65.00572 * 12 11 9 14 14 C 1.53001 * 109.47069 * 185.00472 * 12 11 9 15 15 N 1.46899 * 109.47092 * 305.00573 * 12 11 9 16 16 C 1.46900 * 110.99816 * 154.99937 * 15 12 11 17 17 C 1.50701 * 109.47130 * 179.97438 * 16 15 12 18 18 O 1.21294 * 119.99869 * 359.97438 * 17 16 15 19 19 N 1.34772 * 120.00268 * 179.97438 * 17 16 15 20 20 C 1.37097 * 120.00261 * 180.02562 * 19 17 16 21 21 H 1.08000 * 119.99879 * 359.97438 * 20 19 17 22 22 C 1.38955 * 120.00053 * 180.02562 * 20 19 17 23 23 N 1.31416 * 119.99804 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00069 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47067 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47415 * 119.99677 * 24 22 20 27 27 H 1.48496 * 109.47352 * 239.99764 * 24 22 20 28 28 C 1.35381 * 126.13649 * 90.00062 * 3 2 1 29 29 H 1.09001 * 109.46770 * 59.99894 * 1 2 3 30 30 H 1.08995 * 109.47533 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47004 * 300.00677 * 1 2 3 32 32 H 1.09000 * 109.47520 * 239.99286 * 2 1 3 33 33 H 1.09001 * 109.46770 * 120.00106 * 2 1 3 34 34 H 1.07996 * 125.49753 * 0.02562 * 4 3 2 35 35 H 1.08998 * 109.47362 * 275.69962 * 10 9 7 36 36 H 1.08996 * 109.47430 * 35.70375 * 10 9 7 37 37 H 1.09008 * 109.47004 * 155.70546 * 10 9 7 38 38 H 1.09007 * 109.46817 * 330.00554 * 11 9 7 39 39 H 1.08990 * 109.47514 * 209.99916 * 11 9 7 40 40 H 1.09003 * 109.46900 * 180.02562 * 14 12 11 41 41 H 1.08995 * 109.46960 * 299.99911 * 14 12 11 42 42 H 1.09000 * 109.47106 * 60.00139 * 14 12 11 43 43 H 1.00899 * 111.00025 * 278.94800 * 15 12 11 44 44 H 1.08998 * 109.47143 * 299.99427 * 16 15 12 45 45 H 1.08994 * 109.47239 * 59.99829 * 16 15 12 46 46 H 0.97005 * 120.00088 * 0.02562 * 19 17 16 47 47 H 0.96997 * 119.99362 * 180.02562 * 23 22 20 48 48 H 1.07999 * 126.56169 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2859 2.1362 -1.0972 5 7 2.6961 3.3107 -0.7137 6 6 2.7143 3.3479 0.6433 7 6 3.1184 4.4927 1.4776 8 8 3.1889 4.3700 2.6856 9 7 3.4101 5.6761 0.9024 10 6 3.4079 5.8014 -0.5572 11 6 3.7294 6.8373 1.7367 12 6 5.2370 6.8812 1.9942 13 1 5.7615 7.0491 1.0535 14 6 5.5555 8.0193 2.9659 15 7 5.6718 5.6043 2.5761 16 6 7.0934 5.3573 2.3006 17 6 7.5024 4.0420 2.9121 18 8 6.6896 3.3762 3.5181 19 7 8.7712 3.6055 2.7855 20 6 9.1431 2.4087 3.3413 21 1 8.4194 1.8159 3.8810 22 6 10.4514 1.9590 3.2112 23 7 11.3321 2.6806 2.5550 24 14 10.9583 0.3287 3.9692 25 1 9.7900 -0.2853 4.6498 26 1 11.4457 -0.5827 2.9029 27 1 12.0423 0.5581 4.9578 28 6 2.2845 2.1338 1.0934 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8932 -0.5139 0.8900 34 1 2.1726 1.8153 -2.1221 35 1 4.3716 5.4786 -0.9510 36 1 2.6175 5.1773 -0.9742 37 1 3.2329 6.8415 -0.8323 38 1 3.2009 6.7584 2.6868 39 1 3.4217 7.7486 1.2242 40 1 6.6296 8.0508 3.1489 41 1 5.2330 8.9666 2.5341 42 1 5.0311 7.8513 3.9065 43 1 5.4855 5.5766 3.5673 44 1 7.2541 5.3229 1.2231 45 1 7.6919 6.1597 2.7318 46 1 9.4213 4.1381 2.3011 47 1 12.2452 2.3664 2.4639 48 1 2.1771 1.8312 2.1245 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571413689.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:07 Heat of formation + Delta-G solvation = -18.080997 kcal Electronic energy + Delta-G solvation = -29877.834665 eV Core-core repulsion = 25775.578153 eV Total energy + Delta-G solvation = -4102.256512 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.08786 -40.48743 -39.99721 -37.80119 -36.16619 -35.94184 -35.49010 -33.29774 -32.11391 -31.22198 -30.52637 -28.12345 -27.93820 -26.92110 -25.71375 -24.71535 -23.46772 -21.87269 -21.64385 -21.13317 -20.19926 -19.90343 -18.29335 -17.81659 -17.34094 -16.89905 -16.71214 -16.54268 -16.37142 -16.04075 -15.73798 -15.52858 -15.38777 -15.00156 -14.86376 -14.60527 -14.39785 -14.23587 -13.83727 -13.58646 -13.57821 -13.42982 -13.36394 -13.20401 -13.08633 -12.95314 -12.87153 -12.72510 -12.44163 -12.30118 -12.18288 -12.12967 -11.83821 -11.52531 -11.05750 -10.67808 -10.54555 -10.34078 -10.01988 -9.64487 -9.36507 -8.98298 -8.47926 -5.96700 0.72845 1.34174 1.38004 1.53344 1.59706 1.77889 2.05165 2.27691 2.37870 2.77830 2.98918 3.18540 3.53485 3.57746 3.78147 3.93088 3.99254 4.10665 4.15341 4.23511 4.35630 4.38191 4.41350 4.45691 4.50932 4.57058 4.57588 4.65181 4.75733 4.81973 4.84791 4.92692 5.01496 5.05692 5.16049 5.22046 5.22757 5.29417 5.38649 5.57792 5.89573 5.94531 6.22786 6.23807 6.52230 6.60390 6.66526 6.91453 7.12016 7.55077 7.56756 8.12617 8.70180 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008361 B = 0.003613 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3348.069911 B = 7748.807655 C =10298.996669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.090 3.910 3 N -0.450 5.450 4 C 0.189 3.811 5 N -0.483 5.483 6 C -0.083 4.083 7 C 0.596 3.404 8 O -0.564 6.564 9 N -0.596 5.596 10 C 0.083 3.917 11 C 0.130 3.870 12 C 0.066 3.934 13 H 0.083 0.917 14 C -0.172 4.172 15 N -0.663 5.663 16 C 0.070 3.930 17 C 0.438 3.562 18 O -0.617 6.617 19 N -0.576 5.576 20 C -0.333 4.333 21 H 0.074 0.926 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.994 3.006 25 H -0.276 1.276 26 H -0.268 1.268 27 H -0.268 1.268 28 C 0.020 3.980 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.047 0.953 32 H 0.126 0.874 33 H 0.094 0.906 34 H 0.252 0.748 35 H 0.032 0.968 36 H 0.100 0.900 37 H 0.084 0.916 38 H 0.063 0.937 39 H 0.115 0.885 40 H 0.051 0.949 41 H 0.089 0.911 42 H 0.052 0.948 43 H 0.338 0.662 44 H 0.091 0.909 45 H 0.062 0.938 46 H 0.395 0.605 47 H 0.278 0.722 48 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.369 3.357 -12.096 23.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.030 4.030 3 N -0.132 5.132 4 C -0.095 4.095 5 N -0.203 5.203 6 C -0.211 4.211 7 C 0.385 3.615 8 O -0.442 6.442 9 N -0.327 5.327 10 C -0.059 4.059 11 C 0.007 3.993 12 C -0.045 4.045 13 H 0.101 0.899 14 C -0.232 4.232 15 N -0.295 5.295 16 C -0.063 4.063 17 C 0.225 3.775 18 O -0.502 6.502 19 N -0.214 5.214 20 C -0.462 4.462 21 H 0.092 0.908 22 C -0.213 4.213 23 N -0.563 5.563 24 Si 0.818 3.182 25 H -0.200 1.200 26 H -0.193 1.193 27 H -0.193 1.193 28 C -0.120 4.120 29 H 0.087 0.913 30 H 0.117 0.883 31 H 0.066 0.934 32 H 0.144 0.856 33 H 0.112 0.888 34 H 0.268 0.732 35 H 0.051 0.949 36 H 0.118 0.882 37 H 0.103 0.897 38 H 0.081 0.919 39 H 0.133 0.867 40 H 0.070 0.930 41 H 0.108 0.892 42 H 0.071 0.929 43 H 0.157 0.843 44 H 0.109 0.891 45 H 0.079 0.921 46 H 0.229 0.771 47 H 0.087 0.913 48 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -20.725 2.971 -12.160 24.212 hybrid contribution 1.271 -0.609 1.466 2.034 sum -19.454 2.362 -10.694 22.325 Atomic orbital electron populations 1.22124 0.92768 1.04428 1.02659 1.22307 0.96548 0.77522 1.06622 1.45696 1.47636 1.14109 1.05721 1.26109 1.01458 0.86833 0.95050 1.70640 1.19773 1.20508 1.09411 1.20668 1.12979 0.96150 0.91346 1.17118 0.76240 0.82181 0.86005 1.90752 1.54448 1.83427 1.15585 1.47374 1.68009 1.09300 1.08010 1.22160 1.02809 1.03019 0.77926 1.21632 0.93898 0.88107 0.95700 1.22151 0.96872 0.87141 0.98329 0.89860 1.22374 1.01552 0.99626 0.99605 1.60067 1.15192 1.33995 1.20200 1.21490 0.90814 0.93173 1.00790 1.20933 0.82289 0.89737 0.84546 1.90527 1.52106 1.60244 1.47341 1.41928 1.09481 1.20219 1.49734 1.19670 0.95725 0.98131 1.32689 0.90805 1.26058 0.94882 1.02947 0.97448 1.69688 1.04746 1.39863 1.41972 0.84861 0.78042 0.77143 0.78194 1.20047 1.19301 1.19305 1.22582 1.03369 0.92047 0.93993 0.91341 0.88312 0.93396 0.85637 0.88758 0.73240 0.94877 0.88167 0.89708 0.91896 0.86656 0.93013 0.89191 0.92868 0.84279 0.89074 0.92071 0.77143 0.91279 0.80499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 10.24 71.98 0.74 -0.61 16 2 C 0.09 0.99 6.84 86.38 0.59 1.58 16 3 N -0.45 -9.10 2.73 -528.39 -1.44 -10.54 16 4 C 0.19 3.72 12.55 180.10 2.26 5.98 16 5 N -0.48 -13.38 7.77 -188.82 -1.47 -14.85 16 6 C -0.08 -2.81 6.67 40.50 0.27 -2.54 16 7 C 0.60 22.61 7.07 86.63 0.61 23.22 16 8 O -0.56 -25.58 15.43 -4.12 -0.06 -25.64 16 9 N -0.60 -18.00 2.78 -850.78 -2.36 -20.36 16 10 C 0.08 2.01 9.68 127.77 1.24 3.24 16 11 C 0.13 3.31 5.23 86.38 0.45 3.76 16 12 C 0.07 1.79 2.89 44.92 0.13 1.92 16 13 H 0.08 2.12 7.80 -2.39 -0.02 2.10 16 14 C -0.17 -3.77 9.16 71.98 0.66 -3.11 16 15 N -0.66 -25.40 3.99 -495.58 -1.98 -27.38 16 16 C 0.07 2.81 5.97 85.56 0.51 3.32 16 17 C 0.44 23.39 7.82 87.66 0.69 24.08 16 18 O -0.62 -38.47 15.78 -3.07 -0.05 -38.52 16 19 N -0.58 -32.15 5.29 -306.98 -1.62 -33.77 16 20 C -0.33 -20.18 9.68 84.04 0.81 -19.37 16 21 H 0.07 4.81 7.16 -2.91 -0.02 4.79 16 22 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 23 N -0.92 -51.87 13.05 21.67 0.28 -51.58 16 24 Si 0.99 44.88 29.55 68.60 2.03 46.91 16 25 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 26 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 27 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 28 C 0.02 0.60 11.27 83.72 0.94 1.54 16 29 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.10 0.42 8.14 -2.39 -0.02 0.41 16 31 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.25 2.24 8.06 -2.91 -0.02 2.22 16 35 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.10 2.51 5.22 -2.39 -0.01 2.49 16 37 H 0.08 1.43 7.83 -2.38 -0.02 1.41 16 38 H 0.06 1.83 7.48 -2.38 -0.02 1.81 16 39 H 0.12 1.95 7.86 -2.39 -0.02 1.93 16 40 H 0.05 1.20 7.45 -2.39 -0.02 1.18 16 41 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.05 1.24 8.13 -2.39 -0.02 1.22 16 43 H 0.34 14.50 8.17 -89.69 -0.73 13.77 16 44 H 0.09 3.44 8.06 -2.39 -0.02 3.42 16 45 H 0.06 2.17 7.44 -2.39 -0.02 2.15 16 46 H 0.39 20.91 7.90 -92.70 -0.73 20.18 16 47 H 0.28 14.50 8.31 -92.71 -0.77 13.73 16 48 H 0.18 5.24 8.06 -2.91 -0.02 5.22 16 Total: -1.00 -86.62 400.14 3.22 -83.40 By element: Atomic # 1 Polarization: 50.13 SS G_CDS: -0.48 Total: 49.65 kcal Atomic # 6 Polarization: 32.32 SS G_CDS: 10.37 Total: 42.69 kcal Atomic # 7 Polarization: -149.90 SS G_CDS: -8.59 Total: -158.49 kcal Atomic # 8 Polarization: -64.05 SS G_CDS: -0.11 Total: -64.16 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -86.62 3.22 -83.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571413689.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.317 kcal (2) G-P(sol) polarization free energy of solvation -86.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds