Wall clock time and date at job start Tue Mar 31 2020 20:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46902 * 2 1 4 4 O 1.42901 * 109.47564 * 120.00343 * 2 1 3 5 5 C 1.42895 * 113.99908 * 270.00189 * 4 2 1 6 6 C 1.50702 * 109.46947 * 179.97438 * 5 4 2 7 7 C 1.35345 * 126.91527 * 0.02562 * 6 5 4 8 8 N 1.33768 * 106.49990 * 180.02562 * 7 6 5 9 9 N 1.28637 * 108.88698 * 359.97438 * 8 7 6 10 10 N 1.28719 * 110.17412 * 0.02562 * 9 8 7 11 11 H 0.96996 * 125.86264 * 179.97438 * 10 9 8 12 12 C 1.50699 * 109.47097 * 240.00522 * 2 1 3 13 13 O 1.21278 * 120.00197 * 250.09130 * 12 2 1 14 14 N 1.34778 * 120.00154 * 70.09411 * 12 2 1 15 15 C 1.46927 * 120.62922 * 5.07445 * 14 12 2 16 16 C 1.52762 * 109.01080 * 233.58653 * 15 14 12 17 17 C 1.53041 * 109.38045 * 305.59187 * 16 15 14 18 18 C 1.53008 * 109.45658 * 181.25866 * 17 16 15 19 19 N 1.46507 * 109.46856 * 64.92980 * 18 17 16 20 20 C 1.36932 * 119.99723 * 180.02562 * 19 18 17 21 21 H 1.08005 * 120.00389 * 359.97438 * 20 19 18 22 22 C 1.38812 * 120.00256 * 180.02562 * 20 19 18 23 23 N 1.31631 * 119.99435 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00515 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47107 * 89.99910 * 24 22 20 26 26 H 1.48495 * 109.47449 * 209.99733 * 24 22 20 27 27 H 1.48501 * 109.46869 * 330.00014 * 24 22 20 28 28 C 1.53039 * 109.53967 * 61.24005 * 17 16 15 29 29 C 1.46929 * 120.63040 * 185.36144 * 14 12 2 30 30 H 1.09005 * 109.47259 * 295.00357 * 1 2 3 31 31 H 1.08994 * 109.47159 * 55.00670 * 1 2 3 32 32 H 1.09001 * 109.47161 * 175.00884 * 1 2 3 33 33 H 1.09005 * 109.47221 * 59.99772 * 5 4 2 34 34 H 1.08999 * 109.47325 * 299.99385 * 5 4 2 35 35 H 1.08000 * 126.74753 * 0.25859 * 7 6 5 36 36 H 1.08997 * 109.58508 * 353.42591 * 15 14 12 37 37 H 1.09006 * 109.58335 * 113.84866 * 15 14 12 38 38 H 1.09001 * 109.56277 * 185.55322 * 16 15 14 39 39 H 1.09003 * 109.35612 * 65.50053 * 16 15 14 40 40 H 1.09000 * 109.46402 * 301.21695 * 17 16 15 41 41 H 1.08997 * 109.47100 * 184.93220 * 18 17 16 42 42 H 1.09003 * 109.46989 * 304.93298 * 18 17 16 43 43 H 0.96994 * 120.00161 * 0.02562 * 19 18 17 44 44 H 0.96998 * 119.99462 * 179.97438 * 23 22 20 45 45 H 1.08998 * 109.49331 * 178.67513 * 28 17 16 46 46 H 1.09006 * 109.52390 * 58.60192 * 28 17 16 47 47 H 1.08995 * 109.58339 * 246.15287 * 29 14 12 48 48 H 1.08997 * 109.58737 * 6.43978 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2002 0.1828 2.2940 6 6 2.7004 -0.6286 3.4612 7 6 2.9421 -1.9602 3.4816 8 7 3.3699 -2.2498 4.7154 9 7 3.3922 -1.1692 5.4129 10 7 2.9982 -0.1725 4.6999 11 1 2.9268 0.7473 4.9993 12 6 2.0323 -0.7103 -1.2305 13 8 2.5716 -1.7918 -1.1288 14 7 1.8823 -0.1437 -2.4442 15 6 1.3324 1.2126 -2.5743 16 6 0.1527 1.1803 -3.5443 17 6 0.5998 0.5533 -4.8669 18 6 -0.5722 0.5488 -5.8506 19 7 -0.9398 1.9285 -6.1786 20 6 -1.9701 2.1747 -7.0462 21 1 -2.5115 1.3518 -7.4891 22 6 -2.3181 3.4819 -7.3575 23 7 -1.6579 4.4849 -6.8181 24 14 -3.7231 3.8179 -8.5417 25 1 -4.9955 3.9226 -7.7831 26 1 -3.4699 5.0916 -9.2617 27 1 -3.8210 2.7063 -9.5215 28 6 1.0644 -0.8839 -4.6207 29 6 2.2596 -0.8729 -3.6626 30 1 -0.3634 0.4344 0.9314 31 1 -0.3633 0.5893 -0.8418 32 1 -0.3633 -1.0238 -0.0894 33 1 1.2538 0.6545 2.5588 34 1 2.9320 0.9512 2.0450 35 1 2.8180 -2.6520 2.6616 36 1 0.9931 1.5643 -1.6000 37 1 2.1007 1.8829 -2.9598 38 1 -0.2000 2.1960 -3.7239 39 1 -0.6529 0.5857 -3.1137 40 1 1.4220 1.1342 -5.2847 41 1 -0.2807 0.0242 -6.7605 42 1 -1.4251 0.0435 -5.3973 43 1 -0.4533 2.6676 -5.7811 44 1 -1.9008 5.3983 -7.0359 45 1 1.3604 -1.3375 -5.5666 46 1 0.2502 -1.4596 -4.1803 47 1 3.1050 -0.3762 -4.1386 48 1 2.5342 -1.8960 -3.4059 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575741422.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:41 Heat of formation + Delta-G solvation = 28.221832 kcal Electronic energy + Delta-G solvation = -29110.338012 eV Core-core repulsion = 25010.089341 eV Total energy + Delta-G solvation = -4100.248671 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.67870 -40.65627 -38.66226 -37.49152 -35.05192 -33.92405 -33.37022 -32.65822 -31.63610 -30.53889 -30.34537 -27.20769 -26.90256 -24.75875 -23.54827 -23.37339 -23.22289 -22.22002 -21.70101 -20.45885 -19.26746 -18.70357 -17.78169 -17.14240 -17.01747 -16.74866 -16.02213 -15.78469 -15.21132 -15.04223 -14.80127 -14.55147 -14.31503 -14.27562 -13.85837 -13.69122 -13.63561 -13.11617 -12.90424 -12.74631 -12.58197 -12.36985 -12.27187 -12.17073 -11.88047 -11.80493 -11.27765 -11.23192 -11.05867 -10.99429 -10.89009 -10.59701 -10.47866 -10.38114 -10.35636 -10.04915 -9.72894 -9.70657 -9.47503 -8.92767 -8.73368 -6.97377 -5.82956 -3.10887 1.09645 1.95859 2.22261 2.39937 2.60866 3.33315 3.39073 3.44940 3.46147 3.96604 4.18697 4.37024 4.40001 4.50866 4.53618 4.55982 4.70680 4.71837 4.93221 4.94308 4.98403 5.05882 5.10313 5.24721 5.28124 5.29810 5.35308 5.49197 5.56560 5.68893 5.78828 5.87647 5.87863 5.88667 6.00731 6.11508 6.20058 6.27369 6.35402 6.37628 6.49525 6.55983 6.74091 6.84954 7.22919 7.65192 7.99470 8.05218 8.36645 9.47983 10.05542 10.40201 11.39995 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.024129 B = 0.001926 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.133748 B =14533.269011 C =15291.791698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.075 3.925 3 H 0.089 0.911 4 O -0.346 6.346 5 C 0.137 3.863 6 C -0.021 4.021 7 C -0.015 4.015 8 N -0.267 5.267 9 N -0.077 5.077 10 N -0.386 5.386 11 H 0.448 0.552 12 C 0.518 3.482 13 O -0.524 6.524 14 N -0.605 5.605 15 C 0.099 3.901 16 C -0.127 4.127 17 C -0.094 4.094 18 C 0.158 3.842 19 N -0.732 5.732 20 C -0.238 4.238 21 H 0.070 0.930 22 C -0.015 4.015 23 N -0.935 5.935 24 Si 0.907 3.093 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.282 1.282 28 C -0.126 4.126 29 C 0.115 3.885 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.198 0.802 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.019 0.981 42 H 0.018 0.982 43 H 0.383 0.617 44 H 0.255 0.745 45 H 0.076 0.924 46 H 0.066 0.934 47 H 0.068 0.932 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.747 -5.396 18.649 21.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.014 3.986 3 H 0.106 0.894 4 O -0.263 6.263 5 C 0.058 3.942 6 C -0.154 4.154 7 C -0.171 4.171 8 N -0.134 5.134 9 N -0.058 5.058 10 N -0.109 5.109 11 H 0.293 0.707 12 C 0.304 3.696 13 O -0.399 6.399 14 N -0.340 5.340 15 C -0.023 4.023 16 C -0.165 4.165 17 C -0.113 4.113 18 C 0.030 3.970 19 N -0.376 5.376 20 C -0.369 4.369 21 H 0.087 0.913 22 C -0.210 4.210 23 N -0.584 5.584 24 Si 0.738 3.262 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.208 1.208 28 C -0.165 4.165 29 C -0.007 4.007 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.215 0.785 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.108 0.892 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.037 0.963 42 H 0.036 0.964 43 H 0.217 0.783 44 H 0.064 0.936 45 H 0.095 0.905 46 H 0.085 0.915 47 H 0.086 0.914 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 9.468 -6.832 19.933 23.101 hybrid contribution -1.226 1.914 -1.495 2.720 sum 8.243 -4.918 18.438 20.786 Atomic orbital electron populations 1.22355 0.92743 1.04533 1.03794 1.21954 0.95606 0.96230 0.84842 0.89352 1.87996 1.86736 1.33156 1.18420 1.20509 0.99928 0.90516 0.83278 1.21730 1.08730 0.96366 0.88607 1.23561 1.02870 0.94099 0.96590 1.75150 1.16387 1.18187 1.03698 1.78323 1.17608 0.90299 1.19551 1.44939 1.45370 1.12530 1.08091 0.70690 1.20165 0.79295 0.86083 0.84059 1.90714 1.42146 1.21244 1.85798 1.48078 1.63474 1.16856 1.05573 1.21938 0.97076 0.82455 1.00867 1.21879 0.96454 1.03345 0.94796 1.21301 0.99268 0.95088 0.95595 1.20676 0.93313 0.88583 0.94426 1.42363 1.39725 1.01076 1.54439 1.19236 1.07826 0.91776 1.18106 0.91252 1.24724 0.99869 0.95577 1.00857 1.69651 1.42954 0.98105 1.47652 0.86194 0.82049 0.77326 0.80656 1.21756 1.21780 1.20784 1.21923 0.97731 0.97655 0.99195 1.21641 0.97139 0.97967 0.83953 0.91042 0.89757 0.90765 0.90720 0.90850 0.78473 0.89980 0.90805 0.89165 0.91625 0.90907 0.96322 0.96392 0.78310 0.93553 0.90501 0.91512 0.91354 0.89160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.29 9.19 37.16 0.34 -0.95 16 2 C 0.07 0.62 2.28 -27.88 -0.06 0.56 16 3 H 0.09 0.50 6.80 -51.93 -0.35 0.14 16 4 O -0.35 -3.17 8.93 -54.94 -0.49 -3.66 16 5 C 0.14 0.77 6.37 36.01 0.23 1.00 16 6 C -0.02 -0.16 7.28 -82.09 -0.60 -0.76 16 7 C -0.01 -0.15 11.41 -17.74 -0.20 -0.35 16 8 N -0.27 -3.25 12.41 30.23 0.38 -2.88 16 9 N -0.08 -0.81 13.38 60.35 0.81 0.00 16 10 N -0.39 -2.53 6.98 33.54 0.23 -2.30 16 11 H 0.45 0.95 8.96 -190.40 -1.71 -0.75 16 12 C 0.52 6.11 7.03 -10.99 -0.08 6.03 16 13 O -0.52 -8.22 15.97 -14.15 -0.23 -8.45 16 14 N -0.60 -6.51 2.98 -173.03 -0.52 -7.03 16 15 C 0.10 0.94 5.57 -3.93 -0.02 0.91 16 16 C -0.13 -1.57 5.12 -26.83 -0.14 -1.70 16 17 C -0.09 -1.30 2.19 -90.57 -0.20 -1.50 16 18 C 0.16 2.92 5.65 -4.03 -0.02 2.89 16 19 N -0.73 -17.28 5.32 -59.90 -0.32 -17.60 16 20 C -0.24 -6.42 9.99 -15.06 -0.15 -6.57 16 21 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 22 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 23 N -0.93 -27.06 13.06 55.49 0.72 -26.34 16 24 Si 0.91 21.78 29.55 -169.99 -5.02 16.76 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 28 C -0.13 -1.47 5.36 -26.61 -0.14 -1.62 16 29 C 0.11 1.27 6.42 -3.71 -0.02 1.25 16 30 H 0.07 0.39 7.78 -51.93 -0.40 -0.02 16 31 H 0.08 0.60 5.68 -51.93 -0.29 0.31 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.25 7.78 -51.93 -0.40 -0.15 16 34 H 0.07 0.27 8.08 -51.93 -0.42 -0.14 16 35 H 0.20 1.96 7.94 -52.49 -0.42 1.55 16 36 H 0.08 0.58 4.52 -51.93 -0.23 0.35 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 1.31 7.15 -51.93 -0.37 0.94 16 39 H 0.07 0.82 7.78 -51.93 -0.40 0.42 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.38 9.35 6.84 -40.82 -0.28 9.07 16 44 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 45 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 46 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.09 1.07 7.04 -51.93 -0.37 0.71 16 LS Contribution 386.88 15.07 5.83 5.83 Total: -1.00 -35.35 386.88 -8.35 -43.70 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -8.58 Total: 3.27 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -1.16 Total: -1.30 kcal Atomic # 7 Polarization: -57.45 SS G_CDS: 1.31 Total: -56.15 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: -0.72 Total: -12.11 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.35 -8.35 -43.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575741422.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.917 kcal (2) G-P(sol) polarization free energy of solvation -35.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds