Wall clock time and date at job start Tue Mar 31 2020 20:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46902 * 2 1 4 4 O 1.42901 * 109.47564 * 120.00343 * 2 1 3 5 5 C 1.42895 * 113.99908 * 270.00189 * 4 2 1 6 6 C 1.50702 * 109.46947 * 179.97438 * 5 4 2 7 7 C 1.35345 * 126.91527 * 0.02562 * 6 5 4 8 8 N 1.33768 * 106.49990 * 180.02562 * 7 6 5 9 9 N 1.28637 * 108.88698 * 359.97438 * 8 7 6 10 10 N 1.28719 * 110.17412 * 0.02562 * 9 8 7 11 11 H 0.96996 * 125.86264 * 179.97438 * 10 9 8 12 12 C 1.50699 * 109.47097 * 240.00522 * 2 1 3 13 13 O 1.21278 * 120.00197 * 250.09130 * 12 2 1 14 14 N 1.34778 * 120.00154 * 70.09411 * 12 2 1 15 15 C 1.46927 * 120.62922 * 5.07445 * 14 12 2 16 16 C 1.52762 * 109.01080 * 233.58653 * 15 14 12 17 17 C 1.53041 * 109.38045 * 305.59187 * 16 15 14 18 18 C 1.53008 * 109.45658 * 181.25866 * 17 16 15 19 19 N 1.46507 * 109.46856 * 64.92980 * 18 17 16 20 20 C 1.36932 * 119.99723 * 180.02562 * 19 18 17 21 21 H 1.08005 * 120.00389 * 359.97438 * 20 19 18 22 22 C 1.38812 * 120.00256 * 180.02562 * 20 19 18 23 23 N 1.31631 * 119.99435 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00515 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47107 * 89.99910 * 24 22 20 26 26 H 1.48495 * 109.47449 * 209.99733 * 24 22 20 27 27 H 1.48501 * 109.46869 * 330.00014 * 24 22 20 28 28 C 1.53039 * 109.53967 * 61.24005 * 17 16 15 29 29 C 1.46929 * 120.63040 * 185.36144 * 14 12 2 30 30 H 1.09005 * 109.47259 * 295.00357 * 1 2 3 31 31 H 1.08994 * 109.47159 * 55.00670 * 1 2 3 32 32 H 1.09001 * 109.47161 * 175.00884 * 1 2 3 33 33 H 1.09005 * 109.47221 * 59.99772 * 5 4 2 34 34 H 1.08999 * 109.47325 * 299.99385 * 5 4 2 35 35 H 1.08000 * 126.74753 * 0.25859 * 7 6 5 36 36 H 1.08997 * 109.58508 * 353.42591 * 15 14 12 37 37 H 1.09006 * 109.58335 * 113.84866 * 15 14 12 38 38 H 1.09001 * 109.56277 * 185.55322 * 16 15 14 39 39 H 1.09003 * 109.35612 * 65.50053 * 16 15 14 40 40 H 1.09000 * 109.46402 * 301.21695 * 17 16 15 41 41 H 1.08997 * 109.47100 * 184.93220 * 18 17 16 42 42 H 1.09003 * 109.46989 * 304.93298 * 18 17 16 43 43 H 0.96994 * 120.00161 * 0.02562 * 19 18 17 44 44 H 0.96998 * 119.99462 * 179.97438 * 23 22 20 45 45 H 1.08998 * 109.49331 * 178.67513 * 28 17 16 46 46 H 1.09006 * 109.52390 * 58.60192 * 28 17 16 47 47 H 1.08995 * 109.58339 * 246.15287 * 29 14 12 48 48 H 1.08997 * 109.58737 * 6.43978 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2002 0.1828 2.2940 6 6 2.7004 -0.6286 3.4612 7 6 2.9421 -1.9602 3.4816 8 7 3.3699 -2.2498 4.7154 9 7 3.3922 -1.1692 5.4129 10 7 2.9982 -0.1725 4.6999 11 1 2.9268 0.7473 4.9993 12 6 2.0323 -0.7103 -1.2305 13 8 2.5716 -1.7918 -1.1288 14 7 1.8823 -0.1437 -2.4442 15 6 1.3324 1.2126 -2.5743 16 6 0.1527 1.1803 -3.5443 17 6 0.5998 0.5533 -4.8669 18 6 -0.5722 0.5488 -5.8506 19 7 -0.9398 1.9285 -6.1786 20 6 -1.9701 2.1747 -7.0462 21 1 -2.5115 1.3518 -7.4891 22 6 -2.3181 3.4819 -7.3575 23 7 -1.6579 4.4849 -6.8181 24 14 -3.7231 3.8179 -8.5417 25 1 -4.9955 3.9226 -7.7831 26 1 -3.4699 5.0916 -9.2617 27 1 -3.8210 2.7063 -9.5215 28 6 1.0644 -0.8839 -4.6207 29 6 2.2596 -0.8729 -3.6626 30 1 -0.3634 0.4344 0.9314 31 1 -0.3633 0.5893 -0.8418 32 1 -0.3633 -1.0238 -0.0894 33 1 1.2538 0.6545 2.5588 34 1 2.9320 0.9512 2.0450 35 1 2.8180 -2.6520 2.6616 36 1 0.9931 1.5643 -1.6000 37 1 2.1007 1.8829 -2.9598 38 1 -0.2000 2.1960 -3.7239 39 1 -0.6529 0.5857 -3.1137 40 1 1.4220 1.1342 -5.2847 41 1 -0.2807 0.0242 -6.7605 42 1 -1.4251 0.0435 -5.3973 43 1 -0.4533 2.6676 -5.7811 44 1 -1.9008 5.3983 -7.0359 45 1 1.3604 -1.3375 -5.5666 46 1 0.2502 -1.4596 -4.1803 47 1 3.1050 -0.3762 -4.1386 48 1 2.5342 -1.8960 -3.4059 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001575741422.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:40 Heat of formation + Delta-G solvation = 2.884067 kcal Electronic energy + Delta-G solvation = -29111.436739 eV Core-core repulsion = 25010.089341 eV Total energy + Delta-G solvation = -4101.347399 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.35150 -41.50561 -39.43365 -38.45482 -36.54297 -34.69630 -34.51702 -33.62924 -32.56954 -31.95161 -31.26599 -28.29785 -27.69851 -25.95254 -24.75937 -24.25918 -24.09340 -23.05077 -22.74625 -21.54293 -20.11406 -19.47060 -19.07981 -18.41866 -17.74042 -17.38970 -16.84104 -16.68137 -16.49194 -15.93890 -15.77056 -15.52665 -15.40303 -15.31223 -15.19945 -14.95402 -14.45798 -14.16618 -13.95928 -13.82476 -13.49225 -13.32508 -13.08558 -13.05655 -12.90600 -12.83765 -12.73269 -12.43805 -12.18193 -12.11017 -11.95310 -11.93376 -11.68451 -11.64019 -11.47727 -11.28900 -11.10985 -10.89352 -10.57866 -10.09361 -9.65648 -8.94584 -7.92971 -5.19831 0.47470 1.39959 1.46424 1.49699 1.49924 1.54264 1.58383 1.93146 2.58000 2.75718 3.36060 3.40778 3.53760 3.72811 3.78658 3.81514 3.92929 3.93877 4.01382 4.08801 4.14637 4.32010 4.34739 4.35420 4.41096 4.44780 4.48235 4.62670 4.69703 4.76232 4.77708 4.85879 4.89351 4.99834 5.06580 5.11494 5.13983 5.21054 5.26736 5.33670 5.50718 5.57948 5.59922 5.89026 6.01028 6.30551 6.39741 7.13503 7.34830 7.37723 8.14138 8.38781 9.30123 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.024129 B = 0.001926 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.133748 B =14533.269011 C =15291.791698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.080 3.920 3 H 0.126 0.874 4 O -0.374 6.374 5 C 0.133 3.867 6 C -0.001 4.001 7 C -0.044 4.044 8 N -0.304 5.304 9 N -0.101 5.101 10 N -0.362 5.362 11 H 0.468 0.532 12 C 0.511 3.489 13 O -0.571 6.571 14 N -0.603 5.603 15 C 0.105 3.895 16 C -0.121 4.121 17 C -0.084 4.084 18 C 0.156 3.844 19 N -0.740 5.740 20 C -0.245 4.245 21 H 0.070 0.930 22 C -0.071 4.071 23 N -0.965 5.965 24 Si 0.968 3.032 25 H -0.287 1.287 26 H -0.295 1.295 27 H -0.274 1.274 28 C -0.116 4.116 29 C 0.116 3.884 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.052 0.948 33 H 0.109 0.891 34 H 0.103 0.897 35 H 0.191 0.809 36 H 0.114 0.886 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.014 0.986 42 H 0.015 0.985 43 H 0.377 0.623 44 H 0.251 0.749 45 H 0.083 0.917 46 H 0.061 0.939 47 H 0.080 0.920 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.448 -3.901 19.295 21.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.019 3.981 3 H 0.143 0.857 4 O -0.292 6.292 5 C 0.055 3.945 6 C -0.136 4.136 7 C -0.201 4.201 8 N -0.171 5.171 9 N -0.081 5.081 10 N -0.088 5.088 11 H 0.318 0.682 12 C 0.299 3.701 13 O -0.450 6.450 14 N -0.337 5.337 15 C -0.016 4.016 16 C -0.159 4.159 17 C -0.103 4.103 18 C 0.030 3.970 19 N -0.383 5.383 20 C -0.377 4.377 21 H 0.088 0.912 22 C -0.264 4.264 23 N -0.615 5.615 24 Si 0.797 3.203 25 H -0.214 1.214 26 H -0.222 1.222 27 H -0.199 1.199 28 C -0.154 4.154 29 C -0.006 4.006 30 H 0.115 0.885 31 H 0.105 0.895 32 H 0.071 0.929 33 H 0.127 0.873 34 H 0.121 0.879 35 H 0.208 0.792 36 H 0.132 0.868 37 H 0.103 0.897 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.032 0.968 42 H 0.033 0.967 43 H 0.210 0.790 44 H 0.060 0.940 45 H 0.102 0.898 46 H 0.080 0.920 47 H 0.098 0.902 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 9.166 -5.334 20.600 23.170 hybrid contribution -1.141 1.416 -1.733 2.512 sum 8.025 -3.918 18.867 20.874 Atomic orbital electron populations 1.22349 0.91950 1.03492 1.05276 1.21991 0.95938 0.97140 0.83031 0.85666 1.87974 1.87011 1.34860 1.19385 1.20865 1.02371 0.89931 0.81369 1.21996 1.06693 0.95576 0.89314 1.23642 1.04582 0.95682 0.96239 1.75091 1.17810 1.19489 1.04717 1.78227 1.18953 0.90810 1.20144 1.44882 1.43593 1.12977 1.07377 0.68221 1.20919 0.78342 0.85631 0.85190 1.90694 1.44380 1.23407 1.86523 1.48150 1.62925 1.17204 1.05374 1.21988 0.96032 0.81857 1.01758 1.21770 0.97758 1.01746 0.94654 1.21187 0.97162 0.96675 0.95294 1.20823 0.94951 0.85907 0.95364 1.42517 1.39011 1.02904 1.53881 1.19592 1.08214 0.91873 1.17990 0.91213 1.25457 1.02449 0.95582 1.02912 1.69783 1.44492 0.98115 1.49148 0.85225 0.79302 0.76938 0.78803 1.21447 1.22191 1.19913 1.21812 0.97859 0.95942 0.99813 1.21581 0.97034 0.97879 0.84119 0.88452 0.89512 0.92929 0.87344 0.87928 0.79204 0.86801 0.89729 0.91207 0.91788 0.91216 0.96792 0.96695 0.78982 0.94004 0.89810 0.92003 0.90204 0.90130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 9.19 71.98 0.66 -1.33 16 2 C 0.08 1.07 2.28 29.85 0.07 1.13 16 3 H 0.13 0.74 6.80 -2.39 -0.02 0.72 16 4 O -0.37 -5.93 8.93 -130.14 -1.16 -7.09 16 5 C 0.13 0.97 6.37 71.24 0.45 1.42 16 6 C 0.00 -0.01 7.28 41.35 0.30 0.29 16 7 C -0.04 -0.92 11.41 83.73 0.96 0.04 16 8 N -0.30 -7.57 12.41 -58.26 -0.72 -8.29 16 9 N -0.10 -2.06 13.38 37.02 0.50 -1.56 16 10 N -0.36 -4.01 6.98 -47.79 -0.33 -4.34 16 11 H 0.47 0.61 8.96 -219.96 -1.97 -1.36 16 12 C 0.51 11.21 7.03 87.66 0.62 11.83 16 13 O -0.57 -17.86 15.97 15.82 0.25 -17.60 16 14 N -0.60 -11.77 2.98 -819.74 -2.44 -14.22 16 15 C 0.11 1.68 5.57 86.22 0.48 2.16 16 16 C -0.12 -2.81 5.12 30.53 0.16 -2.66 16 17 C -0.08 -2.26 2.19 -10.76 -0.02 -2.28 16 18 C 0.16 5.72 5.65 86.38 0.49 6.21 16 19 N -0.74 -34.95 5.32 -343.42 -1.83 -36.77 16 20 C -0.24 -13.14 9.99 84.03 0.84 -12.30 16 21 H 0.07 3.66 7.83 -2.91 -0.02 3.64 16 22 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 23 N -0.96 -55.99 13.06 21.65 0.28 -55.71 16 24 Si 0.97 44.59 29.55 68.60 2.03 46.62 16 25 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 26 H -0.30 -13.69 7.11 99.48 0.71 -12.99 16 27 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 28 C -0.12 -2.58 5.36 30.67 0.16 -2.41 16 29 C 0.12 2.43 6.42 86.36 0.55 2.98 16 30 H 0.10 0.62 7.78 -2.38 -0.02 0.61 16 31 H 0.09 0.95 5.68 -2.39 -0.01 0.94 16 32 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.11 0.13 7.78 -2.38 -0.02 0.11 16 34 H 0.10 0.23 8.08 -2.39 -0.02 0.21 16 35 H 0.19 4.03 7.94 -2.91 -0.02 4.01 16 36 H 0.11 1.12 4.52 -2.39 -0.01 1.11 16 37 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 38 H 0.07 1.96 7.15 -2.39 -0.02 1.94 16 39 H 0.06 1.50 7.78 -2.39 -0.02 1.48 16 40 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.38 18.50 6.84 -92.71 -0.63 17.87 16 44 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 45 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 47 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 48 H 0.08 1.89 7.04 -2.39 -0.02 1.87 16 Total: -1.00 -78.94 386.88 1.15 -77.79 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: -1.61 Total: 19.54 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: 6.18 Total: 1.63 kcal Atomic # 7 Polarization: -116.34 SS G_CDS: -4.55 Total: -120.89 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: -0.91 Total: -24.69 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -78.94 1.15 -77.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575741422.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.679 kcal (2) G-P(sol) polarization free energy of solvation -78.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds