Wall clock time and date at job start Tue Mar 31 2020 20:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47430 * 2 1 4 4 O 1.42895 * 109.47030 * 120.00673 * 2 1 3 5 5 C 1.42908 * 113.99880 * 269.99879 * 4 2 1 6 6 C 1.50698 * 109.46682 * 180.02562 * 5 4 2 7 7 C 1.35347 * 126.91759 * 0.02562 * 6 5 4 8 8 N 1.33777 * 106.49556 * 179.97438 * 7 6 5 9 9 N 1.28627 * 108.88675 * 359.97438 * 8 7 6 10 10 N 1.28719 * 110.17992 * 359.75921 * 9 8 7 11 11 H 0.96999 * 125.86983 * 180.23971 * 10 9 8 12 12 C 1.50704 * 109.47023 * 240.00501 * 2 1 3 13 13 O 1.21281 * 119.99866 * 245.00197 * 12 2 1 14 14 N 1.34775 * 120.00022 * 64.99923 * 12 2 1 15 15 C 1.46500 * 120.00150 * 179.97438 * 14 12 2 16 16 C 1.52998 * 109.47356 * 180.02562 * 15 14 12 17 17 H 1.09002 * 109.49657 * 305.00444 * 16 15 14 18 18 C 1.53043 * 109.49961 * 184.93619 * 16 15 14 19 19 C 1.53033 * 109.53944 * 178.71344 * 18 16 15 20 20 C 1.53195 * 109.33450 * 61.32102 * 19 18 16 21 21 N 1.46918 * 108.77904 * 305.37798 * 20 19 18 22 22 C 1.36938 * 120.63274 * 233.63246 * 21 20 19 23 23 H 1.08003 * 120.00075 * 151.80205 * 22 21 20 24 24 C 1.38810 * 119.99968 * 331.81066 * 22 21 20 25 25 N 1.31616 * 119.99794 * 343.08035 * 24 22 21 26 26 Si 1.86800 * 120.00188 * 163.08253 * 24 22 21 27 27 H 1.48497 * 109.47162 * 89.99606 * 26 24 22 28 28 H 1.48499 * 109.47508 * 209.99890 * 26 24 22 29 29 H 1.48504 * 109.47117 * 329.99711 * 26 24 22 30 30 C 1.46933 * 118.73922 * 53.60659 * 21 20 19 31 31 H 1.09008 * 109.46982 * 59.99352 * 1 2 3 32 32 H 1.09001 * 109.47125 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47217 * 299.99857 * 1 2 3 34 34 H 1.08994 * 109.46739 * 299.99964 * 5 4 2 35 35 H 1.08991 * 109.46723 * 59.99891 * 5 4 2 36 36 H 1.08000 * 126.75086 * 359.97438 * 7 6 5 37 37 H 0.96998 * 120.00196 * 0.02562 * 14 12 2 38 38 H 1.09002 * 109.47229 * 300.00552 * 15 14 12 39 39 H 1.08998 * 109.47035 * 60.00313 * 15 14 12 40 40 H 1.09000 * 109.45874 * 298.70934 * 18 16 15 41 41 H 1.09007 * 109.45530 * 58.66626 * 18 16 15 42 42 H 1.08998 * 109.47621 * 301.37073 * 19 18 16 43 43 H 1.08998 * 109.49528 * 181.28344 * 19 18 16 44 44 H 1.09003 * 109.58815 * 185.58812 * 20 19 18 45 45 H 1.09004 * 109.70686 * 65.24004 * 20 19 18 46 46 H 0.97002 * 119.99995 * 180.02562 * 25 24 22 47 47 H 1.08995 * 109.58816 * 186.60364 * 30 21 20 48 48 H 1.09003 * 109.69818 * 66.25018 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6738 1.1667 5 6 2.2000 0.1828 2.2941 6 6 2.7014 -0.6286 3.4609 7 6 2.9439 -1.9600 3.4809 8 7 3.3736 -2.2493 4.7143 9 7 3.3961 -1.1687 5.4115 10 7 3.0058 -0.1713 4.6975 11 1 2.9388 0.7493 4.9955 12 6 2.0323 -0.7103 -1.2306 13 8 2.6529 -1.7466 -1.1217 14 7 1.7918 -0.1940 -2.4520 15 6 2.2806 -0.8842 -3.6483 16 6 1.8763 -0.0937 -4.8942 17 1 0.7974 0.0613 -4.8925 18 6 2.2782 -0.8747 -6.1475 19 6 1.8455 -0.0998 -7.3942 20 6 2.5566 1.2568 -7.4204 21 7 2.2920 1.9540 -6.1546 22 6 1.7790 3.2237 -6.1514 23 1 1.1772 3.5609 -5.3203 24 6 2.0321 4.0772 -7.2164 25 7 3.0118 3.8115 -8.0542 26 14 0.9825 5.6031 -7.4604 27 1 1.5876 6.7428 -6.7255 28 1 0.9114 5.9289 -8.9074 29 1 -0.3861 5.3506 -6.9421 30 6 2.5878 1.2630 -4.8921 31 1 -0.3633 0.5140 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 2.9319 0.9511 2.0451 35 1 1.2538 0.6544 2.5588 36 1 2.8158 -2.6525 2.6621 37 1 1.2958 0.6350 -2.5391 38 1 3.3670 -0.9621 -3.6044 39 1 1.8464 -1.8829 -3.6944 40 1 3.3599 -1.0084 -6.1607 41 1 1.7919 -1.8503 -6.1388 42 1 0.7669 0.0553 -7.3695 43 1 2.1116 -0.6674 -8.2859 44 1 2.1780 1.8519 -8.2515 45 1 3.6300 1.1069 -7.5376 46 1 3.1889 4.4081 -8.7982 47 1 2.2297 1.8621 -4.0550 48 1 3.6632 1.1115 -4.7994 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575857511.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:36 Heat of formation + Delta-G solvation = 28.388525 kcal Electronic energy + Delta-G solvation = -28920.620050 eV Core-core repulsion = 24820.378608 eV Total energy + Delta-G solvation = -4100.241443 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.64317 -40.16785 -38.41130 -37.61409 -34.88909 -33.87658 -33.27672 -32.74588 -31.33529 -30.50722 -30.07804 -27.13890 -25.92584 -25.33931 -23.98583 -23.33171 -22.21301 -22.12151 -21.05749 -20.46765 -19.21310 -18.79371 -17.42981 -17.38675 -16.79040 -16.62993 -15.93758 -15.55713 -15.21297 -15.00694 -14.83690 -14.50135 -14.35254 -13.82035 -13.79515 -13.49289 -13.26786 -12.93529 -12.84551 -12.67765 -12.40067 -12.24662 -12.23064 -12.11053 -11.78066 -11.35417 -11.24221 -11.08388 -10.96099 -10.76922 -10.57364 -10.54095 -10.30625 -10.23942 -10.00790 -9.82019 -9.58547 -9.48512 -9.42884 -9.01994 -8.53557 -6.74178 -5.86225 -3.29525 1.13233 2.01308 2.25795 2.53616 2.76540 3.30138 3.37955 3.39082 3.51488 4.05606 4.38051 4.40892 4.43952 4.53672 4.56566 4.62858 4.75384 4.96765 5.02475 5.10516 5.23301 5.27032 5.29117 5.37399 5.39963 5.55668 5.72152 5.77347 5.88863 5.91441 5.93518 6.16899 6.26017 6.31513 6.35070 6.40460 6.50524 6.54077 6.64451 6.70885 6.80115 6.89307 7.33955 7.46721 7.61339 7.70882 8.08672 8.16581 8.37251 9.13316 9.76968 10.33948 11.22000 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016859 B = 0.002082 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.448884 B =13446.594847 C =14485.368672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.073 3.927 3 H 0.092 0.908 4 O -0.345 6.345 5 C 0.137 3.863 6 C -0.020 4.020 7 C -0.015 4.015 8 N -0.267 5.267 9 N -0.078 5.078 10 N -0.387 5.387 11 H 0.448 0.552 12 C 0.512 3.488 13 O -0.522 6.522 14 N -0.720 5.720 15 C 0.128 3.872 16 C -0.117 4.117 17 H 0.073 0.927 18 C -0.100 4.100 19 C -0.141 4.141 20 C 0.169 3.831 21 N -0.591 5.591 22 C -0.255 4.255 23 H 0.064 0.936 24 C 0.003 3.997 25 N -0.900 5.900 26 Si 0.901 3.099 27 H -0.287 1.287 28 H -0.289 1.289 29 H -0.280 1.280 30 C 0.154 3.846 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.198 0.802 37 H 0.403 0.597 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.057 0.943 41 H 0.047 0.953 42 H 0.054 0.946 43 H 0.050 0.950 44 H 0.086 0.914 45 H 0.018 0.982 46 H 0.254 0.746 47 H 0.049 0.951 48 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.148 -5.276 17.468 18.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.012 3.988 3 H 0.110 0.890 4 O -0.262 6.262 5 C 0.058 3.942 6 C -0.154 4.154 7 C -0.171 4.171 8 N -0.134 5.134 9 N -0.058 5.058 10 N -0.110 5.110 11 H 0.293 0.707 12 C 0.296 3.704 13 O -0.398 6.398 14 N -0.373 5.373 15 C 0.005 3.995 16 C -0.138 4.138 17 H 0.092 0.908 18 C -0.138 4.138 19 C -0.181 4.181 20 C 0.043 3.957 21 N -0.314 5.314 22 C -0.385 4.385 23 H 0.082 0.918 24 C -0.196 4.196 25 N -0.544 5.544 26 Si 0.731 3.269 27 H -0.214 1.214 28 H -0.215 1.215 29 H -0.205 1.205 30 C 0.027 3.973 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.215 0.785 37 H 0.238 0.762 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.104 0.896 45 H 0.036 0.964 46 H 0.064 0.936 47 H 0.067 0.933 48 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -4.070 -6.741 18.733 20.321 hybrid contribution -1.180 2.524 -1.145 3.012 sum -5.250 -4.218 17.589 18.834 Atomic orbital electron populations 1.22258 0.93079 1.04161 1.03481 1.21961 0.95331 0.96546 0.85003 0.89030 1.88000 1.86768 1.33081 1.18390 1.20511 0.99904 0.90556 0.83266 1.21739 1.08620 0.96336 0.88695 1.23563 1.02810 0.94145 0.96600 1.75146 1.16343 1.18224 1.03722 1.78314 1.17711 0.90283 1.19524 1.44940 1.45370 1.12442 1.08215 0.70702 1.20170 0.80243 0.85714 0.84227 1.90732 1.39459 1.23124 1.86438 1.45989 1.57789 1.28024 1.05521 1.21490 0.99525 0.95523 0.82970 1.21958 1.01419 0.97749 0.92677 0.90829 1.21342 1.00622 0.97193 0.94654 1.22165 1.00940 0.99218 0.95746 1.20797 0.95834 0.88963 0.90106 1.44027 1.74528 1.13326 0.99477 1.19113 1.24525 0.88703 1.06110 0.91833 1.25055 0.97038 0.97652 0.99849 1.70031 1.28523 1.38402 1.17480 0.86326 0.80310 0.83059 0.77214 1.21418 1.21529 1.20507 1.20894 0.95845 0.90397 0.90165 0.90346 0.90806 0.91207 0.90745 0.90791 0.78464 0.76220 0.91454 0.91806 0.92443 0.93377 0.92745 0.93150 0.89600 0.96410 0.93569 0.93254 0.96353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.10 9.48 37.16 0.35 -0.75 16 2 C 0.07 0.61 3.13 -27.88 -0.09 0.52 16 3 H 0.09 0.54 7.79 -51.93 -0.40 0.13 16 4 O -0.35 -3.26 8.92 -55.09 -0.49 -3.75 16 5 C 0.14 0.82 6.37 36.00 0.23 1.05 16 6 C -0.02 -0.17 7.28 -82.09 -0.60 -0.76 16 7 C -0.01 -0.16 11.41 -17.74 -0.20 -0.36 16 8 N -0.27 -3.35 12.41 30.24 0.38 -2.98 16 9 N -0.08 -0.84 13.38 60.35 0.81 -0.04 16 10 N -0.39 -2.69 6.98 33.54 0.23 -2.46 16 11 H 0.45 1.14 8.96 -190.40 -1.71 -0.57 16 12 C 0.51 6.27 7.18 -10.98 -0.08 6.20 16 13 O -0.52 -8.68 16.51 -14.30 -0.24 -8.91 16 14 N -0.72 -8.23 5.29 -60.29 -0.32 -8.55 16 15 C 0.13 1.70 5.07 -4.04 -0.02 1.68 16 16 C -0.12 -1.77 2.37 -90.50 -0.21 -1.98 16 17 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 18 C -0.10 -1.55 5.17 -26.69 -0.14 -1.69 16 19 C -0.14 -2.53 6.08 -26.61 -0.16 -2.70 16 20 C 0.17 3.83 5.30 -3.71 -0.02 3.81 16 21 N -0.59 -13.81 2.99 -172.32 -0.52 -14.32 16 22 C -0.25 -6.56 9.58 -15.06 -0.14 -6.70 16 23 H 0.06 1.58 7.89 -52.48 -0.41 1.16 16 24 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 25 N -0.90 -25.26 11.20 55.49 0.62 -24.64 16 26 Si 0.90 20.67 29.59 -169.99 -5.03 15.64 16 27 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 28 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 29 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 30 C 0.15 2.88 5.60 -3.71 -0.02 2.86 16 31 H 0.08 0.44 7.93 -51.92 -0.41 0.02 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.32 7.87 -51.93 -0.41 -0.09 16 34 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 35 H 0.07 0.26 7.87 -51.93 -0.41 -0.15 16 36 H 0.20 2.04 7.94 -52.49 -0.42 1.62 16 37 H 0.40 3.88 7.48 -40.82 -0.31 3.58 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.09 2.20 6.06 -51.93 -0.31 1.89 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 47 H 0.05 0.86 7.14 -51.93 -0.37 0.49 16 48 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 LS Contribution 392.25 15.07 5.91 5.91 Total: -1.00 -34.52 392.25 -8.78 -43.30 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -8.94 Total: -0.37 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -1.19 Total: 1.17 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: 1.20 Total: -52.98 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: -0.73 Total: -12.66 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.64 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.52 -8.78 -43.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575857511.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.688 kcal (2) G-P(sol) polarization free energy of solvation -34.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds