Wall clock time and date at job start Tue Mar 31 2020 20:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47430 * 2 1 4 4 O 1.42895 * 109.47030 * 120.00673 * 2 1 3 5 5 C 1.42908 * 113.99880 * 269.99879 * 4 2 1 6 6 C 1.50698 * 109.46682 * 180.02562 * 5 4 2 7 7 C 1.35347 * 126.91759 * 0.02562 * 6 5 4 8 8 N 1.33777 * 106.49556 * 179.97438 * 7 6 5 9 9 N 1.28627 * 108.88675 * 359.97438 * 8 7 6 10 10 N 1.28719 * 110.17992 * 359.75921 * 9 8 7 11 11 H 0.96999 * 125.86983 * 180.23971 * 10 9 8 12 12 C 1.50704 * 109.47023 * 240.00501 * 2 1 3 13 13 O 1.21281 * 119.99866 * 245.00197 * 12 2 1 14 14 N 1.34775 * 120.00022 * 64.99923 * 12 2 1 15 15 C 1.46500 * 120.00150 * 179.97438 * 14 12 2 16 16 C 1.52998 * 109.47356 * 180.02562 * 15 14 12 17 17 H 1.09002 * 109.49657 * 305.00444 * 16 15 14 18 18 C 1.53043 * 109.49961 * 184.93619 * 16 15 14 19 19 C 1.53033 * 109.53944 * 178.71344 * 18 16 15 20 20 C 1.53195 * 109.33450 * 61.32102 * 19 18 16 21 21 N 1.46918 * 108.77904 * 305.37798 * 20 19 18 22 22 C 1.36938 * 120.63274 * 233.63246 * 21 20 19 23 23 H 1.08003 * 120.00075 * 151.80205 * 22 21 20 24 24 C 1.38810 * 119.99968 * 331.81066 * 22 21 20 25 25 N 1.31616 * 119.99794 * 343.08035 * 24 22 21 26 26 Si 1.86800 * 120.00188 * 163.08253 * 24 22 21 27 27 H 1.48497 * 109.47162 * 89.99606 * 26 24 22 28 28 H 1.48499 * 109.47508 * 209.99890 * 26 24 22 29 29 H 1.48504 * 109.47117 * 329.99711 * 26 24 22 30 30 C 1.46933 * 118.73922 * 53.60659 * 21 20 19 31 31 H 1.09008 * 109.46982 * 59.99352 * 1 2 3 32 32 H 1.09001 * 109.47125 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47217 * 299.99857 * 1 2 3 34 34 H 1.08994 * 109.46739 * 299.99964 * 5 4 2 35 35 H 1.08991 * 109.46723 * 59.99891 * 5 4 2 36 36 H 1.08000 * 126.75086 * 359.97438 * 7 6 5 37 37 H 0.96998 * 120.00196 * 0.02562 * 14 12 2 38 38 H 1.09002 * 109.47229 * 300.00552 * 15 14 12 39 39 H 1.08998 * 109.47035 * 60.00313 * 15 14 12 40 40 H 1.09000 * 109.45874 * 298.70934 * 18 16 15 41 41 H 1.09007 * 109.45530 * 58.66626 * 18 16 15 42 42 H 1.08998 * 109.47621 * 301.37073 * 19 18 16 43 43 H 1.08998 * 109.49528 * 181.28344 * 19 18 16 44 44 H 1.09003 * 109.58815 * 185.58812 * 20 19 18 45 45 H 1.09004 * 109.70686 * 65.24004 * 20 19 18 46 46 H 0.97002 * 119.99995 * 180.02562 * 25 24 22 47 47 H 1.08995 * 109.58816 * 186.60364 * 30 21 20 48 48 H 1.09003 * 109.69818 * 66.25018 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6738 1.1667 5 6 2.2000 0.1828 2.2941 6 6 2.7014 -0.6286 3.4609 7 6 2.9439 -1.9600 3.4809 8 7 3.3736 -2.2493 4.7143 9 7 3.3961 -1.1687 5.4115 10 7 3.0058 -0.1713 4.6975 11 1 2.9388 0.7493 4.9955 12 6 2.0323 -0.7103 -1.2306 13 8 2.6529 -1.7466 -1.1217 14 7 1.7918 -0.1940 -2.4520 15 6 2.2806 -0.8842 -3.6483 16 6 1.8763 -0.0937 -4.8942 17 1 0.7974 0.0613 -4.8925 18 6 2.2782 -0.8747 -6.1475 19 6 1.8455 -0.0998 -7.3942 20 6 2.5566 1.2568 -7.4204 21 7 2.2920 1.9540 -6.1546 22 6 1.7790 3.2237 -6.1514 23 1 1.1772 3.5609 -5.3203 24 6 2.0321 4.0772 -7.2164 25 7 3.0118 3.8115 -8.0542 26 14 0.9825 5.6031 -7.4604 27 1 1.5876 6.7428 -6.7255 28 1 0.9114 5.9289 -8.9074 29 1 -0.3861 5.3506 -6.9421 30 6 2.5878 1.2630 -4.8921 31 1 -0.3633 0.5140 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 2.9319 0.9511 2.0451 35 1 1.2538 0.6544 2.5588 36 1 2.8158 -2.6525 2.6621 37 1 1.2958 0.6350 -2.5391 38 1 3.3670 -0.9621 -3.6044 39 1 1.8464 -1.8829 -3.6944 40 1 3.3599 -1.0084 -6.1607 41 1 1.7919 -1.8503 -6.1388 42 1 0.7669 0.0553 -7.3695 43 1 2.1116 -0.6674 -8.2859 44 1 2.1780 1.8519 -8.2515 45 1 3.6300 1.1069 -7.5376 46 1 3.1889 4.4081 -8.7982 47 1 2.2297 1.8621 -4.0550 48 1 3.6632 1.1115 -4.7994 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001575857511.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:35 Heat of formation + Delta-G solvation = 3.403292 kcal Electronic energy + Delta-G solvation = -28921.703491 eV Core-core repulsion = 24820.378608 eV Total energy + Delta-G solvation = -4101.324884 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.34985 -41.06463 -39.51959 -38.67683 -36.20905 -34.72943 -34.56543 -33.56013 -32.31196 -32.22961 -31.19333 -27.69912 -27.27106 -26.95774 -24.81440 -24.08667 -23.77260 -22.85133 -22.44450 -21.43381 -20.57829 -19.53469 -18.67397 -18.14102 -17.99484 -17.40465 -16.84738 -16.72786 -16.46245 -16.03668 -15.84752 -15.63077 -15.30784 -15.20322 -15.00007 -14.69281 -14.46996 -13.98184 -13.91006 -13.69595 -13.64664 -13.32962 -13.16112 -12.97665 -12.85366 -12.83770 -12.47726 -12.38861 -12.24584 -11.96068 -11.94813 -11.79227 -11.67959 -11.54522 -11.30347 -11.15106 -11.06272 -10.59490 -10.50172 -10.09326 -10.03750 -8.64464 -7.83798 -5.29515 0.47541 1.43655 1.46717 1.48860 1.51490 1.60029 1.63215 2.06469 2.53687 2.88006 3.31668 3.48439 3.62658 3.69069 3.79290 3.98313 4.02530 4.03716 4.06917 4.09789 4.13401 4.35482 4.36849 4.43397 4.47679 4.60936 4.64775 4.78437 4.80535 4.86195 4.91493 4.95314 5.03666 5.13789 5.14339 5.25629 5.29240 5.36444 5.41671 5.50915 5.60544 5.69942 5.81210 5.89222 6.01706 6.42020 6.59549 7.17811 7.26800 7.34891 7.89712 8.42133 9.22620 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016859 B = 0.002082 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.448884 B =13446.594847 C =14485.368672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.078 3.922 3 H 0.125 0.875 4 O -0.375 6.375 5 C 0.134 3.866 6 C -0.001 4.001 7 C -0.044 4.044 8 N -0.304 5.304 9 N -0.101 5.101 10 N -0.363 5.363 11 H 0.468 0.532 12 C 0.508 3.492 13 O -0.573 6.573 14 N -0.712 5.712 15 C 0.139 3.861 16 C -0.099 4.099 17 H 0.081 0.919 18 C -0.099 4.099 19 C -0.130 4.130 20 C 0.172 3.828 21 N -0.609 5.609 22 C -0.256 4.256 23 H 0.075 0.925 24 C -0.056 4.056 25 N -0.938 5.938 26 Si 0.966 3.034 27 H -0.286 1.286 28 H -0.299 1.299 29 H -0.266 1.266 30 C 0.152 3.848 31 H 0.089 0.911 32 H 0.055 0.945 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.111 0.889 36 H 0.191 0.809 37 H 0.414 0.586 38 H 0.054 0.946 39 H 0.070 0.930 40 H 0.052 0.948 41 H 0.079 0.921 42 H 0.055 0.945 43 H 0.066 0.934 44 H 0.050 0.950 45 H -0.010 1.010 46 H 0.247 0.753 47 H 0.063 0.937 48 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.228 -4.151 18.918 20.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.018 3.982 3 H 0.142 0.858 4 O -0.293 6.293 5 C 0.056 3.944 6 C -0.136 4.136 7 C -0.201 4.201 8 N -0.171 5.171 9 N -0.082 5.082 10 N -0.089 5.089 11 H 0.318 0.682 12 C 0.294 3.706 13 O -0.452 6.452 14 N -0.366 5.366 15 C 0.014 3.986 16 C -0.119 4.119 17 H 0.099 0.901 18 C -0.137 4.137 19 C -0.169 4.169 20 C 0.047 3.953 21 N -0.332 5.332 22 C -0.387 4.387 23 H 0.093 0.907 24 C -0.251 4.251 25 N -0.584 5.584 26 Si 0.794 3.206 27 H -0.213 1.213 28 H -0.226 1.226 29 H -0.190 1.190 30 C 0.026 3.974 31 H 0.107 0.893 32 H 0.074 0.926 33 H 0.113 0.887 34 H 0.116 0.884 35 H 0.129 0.871 36 H 0.208 0.792 37 H 0.251 0.749 38 H 0.072 0.928 39 H 0.088 0.912 40 H 0.071 0.929 41 H 0.097 0.903 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.069 0.931 45 H 0.008 0.992 46 H 0.057 0.943 47 H 0.082 0.918 48 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges -6.178 -5.587 20.238 21.885 hybrid contribution -0.493 2.191 -1.589 2.751 sum -6.672 -3.396 18.649 20.096 Atomic orbital electron populations 1.22263 0.91351 1.03612 1.05292 1.22012 0.96382 0.97020 0.82815 0.85781 1.87970 1.87151 1.34797 1.19397 1.20845 1.02328 0.89880 0.81396 1.22013 1.06623 0.95572 0.89394 1.23647 1.04484 0.95712 0.96261 1.75088 1.17751 1.19515 1.04735 1.78219 1.19033 0.90789 1.20116 1.44886 1.43610 1.12895 1.07512 0.68248 1.20987 0.79094 0.85152 0.85364 1.90713 1.41815 1.25499 1.87178 1.45906 1.57464 1.28217 1.05019 1.21237 0.98804 0.95627 0.82904 1.21707 1.01132 0.95580 0.93480 0.90103 1.21347 1.00681 0.98243 0.93426 1.21990 1.00198 0.96714 0.97970 1.20616 0.94534 0.91029 0.89151 1.44308 1.74639 1.13214 1.01043 1.19548 1.23721 0.89449 1.05952 0.90716 1.25833 0.98315 1.00762 1.00161 1.70202 1.30502 1.39588 1.18154 0.85307 0.79293 0.79691 0.76324 1.21251 1.22585 1.19045 1.21046 0.95486 0.92230 0.88633 0.89269 0.92556 0.88654 0.88362 0.87116 0.79154 0.74885 0.92791 0.91198 0.92914 0.90289 0.92646 0.91549 0.93144 0.99168 0.94344 0.91845 0.97843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.52 9.48 71.98 0.68 -0.84 16 2 C 0.08 1.05 3.13 29.85 0.09 1.14 16 3 H 0.12 0.85 7.79 -2.39 -0.02 0.83 16 4 O -0.38 -6.16 8.92 -129.99 -1.16 -7.32 16 5 C 0.13 1.10 6.37 71.24 0.45 1.55 16 6 C 0.00 -0.02 7.28 41.35 0.30 0.29 16 7 C -0.04 -0.94 11.41 83.73 0.96 0.01 16 8 N -0.30 -7.78 12.41 -58.26 -0.72 -8.50 16 9 N -0.10 -2.14 13.38 37.02 0.50 -1.65 16 10 N -0.36 -4.33 6.98 -47.79 -0.33 -4.67 16 11 H 0.47 1.03 8.96 -219.96 -1.97 -0.94 16 12 C 0.51 11.47 7.18 87.66 0.63 12.10 16 13 O -0.57 -18.78 16.51 15.96 0.26 -18.51 16 14 N -0.71 -14.57 5.29 -463.06 -2.45 -17.02 16 15 C 0.14 3.41 5.07 86.38 0.44 3.85 16 16 C -0.10 -2.76 2.37 -10.72 -0.03 -2.78 16 17 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 18 C -0.10 -2.86 5.17 30.62 0.16 -2.70 16 19 C -0.13 -4.50 6.08 30.67 0.19 -4.31 16 20 C 0.17 7.99 5.30 86.36 0.46 8.44 16 21 N -0.61 -28.33 2.99 -699.09 -2.09 -30.42 16 22 C -0.26 -13.06 9.58 84.03 0.81 -12.25 16 23 H 0.08 3.56 7.89 -2.91 -0.02 3.54 16 24 C -0.06 -2.97 4.92 84.86 0.42 -2.56 16 25 N -0.94 -54.17 11.20 21.65 0.24 -53.93 16 26 Si 0.97 42.54 29.59 68.60 2.03 44.57 16 27 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 28 H -0.30 -13.53 7.11 99.48 0.71 -12.82 16 29 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 30 C 0.15 5.49 5.60 86.36 0.48 5.97 16 31 H 0.09 0.62 7.93 -2.38 -0.02 0.60 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.09 0.40 7.87 -2.39 -0.02 0.38 16 34 H 0.10 0.40 8.08 -2.39 -0.02 0.38 16 35 H 0.11 0.16 7.87 -2.39 -0.02 0.14 16 36 H 0.19 4.17 7.94 -2.91 -0.02 4.15 16 37 H 0.41 6.60 7.48 -92.71 -0.69 5.91 16 38 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 42 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 44 H 0.05 2.68 6.06 -2.39 -0.01 2.66 16 45 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 46 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 47 H 0.06 2.08 7.14 -2.39 -0.02 2.06 16 48 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 Total: -1.00 -79.01 392.25 0.63 -78.38 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -1.68 Total: 11.13 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: 6.04 Total: 7.92 kcal Atomic # 7 Polarization: -111.32 SS G_CDS: -4.86 Total: -116.18 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -0.90 Total: -25.83 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -79.01 0.63 -78.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575857511.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.787 kcal (2) G-P(sol) polarization free energy of solvation -79.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds