Wall clock time and date at job start Tue Mar 31 2020 20:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47363 * 2 1 4 4 O 1.42898 * 109.46577 * 240.00065 * 2 1 3 5 5 C 1.42903 * 114.00174 * 90.00517 * 4 2 1 6 6 C 1.50695 * 109.47185 * 179.97438 * 5 4 2 7 7 C 1.35356 * 126.91464 * 359.97438 * 6 5 4 8 8 N 1.33771 * 106.49441 * 180.29542 * 7 6 5 9 9 N 1.28629 * 108.88970 * 359.56328 * 8 7 6 10 10 N 1.28720 * 110.17780 * 0.44930 * 9 8 7 11 11 H 0.96998 * 125.87223 * 179.69453 * 10 9 8 12 12 C 1.50697 * 109.46810 * 120.00262 * 2 1 3 13 13 O 1.21288 * 119.99987 * 119.99799 * 12 2 1 14 14 N 1.34773 * 120.00203 * 299.99579 * 12 2 1 15 15 C 1.46505 * 120.00123 * 180.02562 * 14 12 2 16 16 C 1.52998 * 109.47140 * 179.97438 * 15 14 12 17 17 H 1.09011 * 109.49728 * 55.06376 * 16 15 14 18 18 C 1.53035 * 109.49873 * 175.15930 * 16 15 14 19 19 C 1.53036 * 109.53896 * 181.31913 * 18 16 15 20 20 C 1.53188 * 109.31246 * 298.63208 * 19 18 16 21 21 N 1.46927 * 108.77333 * 54.64075 * 20 19 18 22 22 C 1.36935 * 120.63660 * 126.37185 * 21 20 19 23 23 H 1.08001 * 119.99639 * 331.83935 * 22 21 20 24 24 C 1.38809 * 120.00676 * 151.83738 * 22 21 20 25 25 N 1.31621 * 119.99479 * 343.08571 * 24 22 21 26 26 Si 1.86795 * 120.00131 * 163.07489 * 24 22 21 27 27 H 1.48501 * 109.47042 * 60.00673 * 26 24 22 28 28 H 1.48508 * 109.46967 * 180.02562 * 26 24 22 29 29 H 1.48495 * 109.47320 * 300.00448 * 26 24 22 30 30 C 1.46927 * 118.73669 * 306.38457 * 21 20 19 31 31 H 1.09005 * 109.47289 * 59.99397 * 1 2 3 32 32 H 1.09000 * 109.47363 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.46659 * 300.00085 * 1 2 3 34 34 H 1.09001 * 109.47026 * 59.99143 * 5 4 2 35 35 H 1.09000 * 109.46568 * 299.99584 * 5 4 2 36 36 H 1.07998 * 126.74941 * 0.03409 * 7 6 5 37 37 H 0.96997 * 119.99721 * 0.02562 * 14 12 2 38 38 H 1.09000 * 109.47041 * 299.99817 * 15 14 12 39 39 H 1.08999 * 109.47318 * 60.00153 * 15 14 12 40 40 H 1.09004 * 109.46011 * 301.33703 * 18 16 15 41 41 H 1.09000 * 109.46163 * 61.29273 * 18 16 15 42 42 H 1.09005 * 109.49592 * 178.68450 * 19 18 16 43 43 H 1.08998 * 109.52637 * 58.60252 * 19 18 16 44 44 H 1.09002 * 109.59091 * 294.84900 * 20 19 18 45 45 H 1.09003 * 109.70616 * 174.49610 * 20 19 18 46 46 H 0.97003 * 119.99538 * 180.02562 * 25 24 22 47 47 H 1.09003 * 109.59326 * 293.82718 * 30 21 20 48 48 H 1.08997 * 109.59105 * 173.39594 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0062 -0.6736 -1.1668 5 6 2.2000 0.1829 -2.2941 6 6 2.7012 -0.6282 -3.4611 7 6 2.9437 -1.9597 -3.4813 8 7 3.3789 -2.2479 -4.7129 9 7 3.3956 -1.1682 -5.4119 10 7 3.0002 -0.1718 -4.6994 11 1 2.9291 0.7481 -4.9985 12 6 2.0323 -0.7105 1.2304 13 8 2.7295 -1.6966 1.1191 14 7 1.7067 -0.2500 2.4545 15 6 2.1955 -0.9404 3.6507 16 6 1.6860 -0.2189 4.9000 17 1 0.5994 -0.1414 4.8577 18 6 2.0943 -1.0064 6.1470 19 6 1.5570 -0.3030 7.3953 20 6 2.1661 1.0995 7.4883 21 7 1.9016 1.8142 6.2321 22 6 1.2983 3.0434 6.2422 23 1 0.6221 3.3064 7.0423 24 6 1.5557 3.9515 5.2244 25 7 2.6033 3.7866 4.4449 26 14 0.4151 5.4071 4.9609 27 1 0.3872 6.2426 6.1883 28 1 0.9060 6.2202 3.8192 29 1 -0.9546 4.9157 4.6653 30 6 2.2965 1.1847 4.9646 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8901 34 1 2.9319 0.9513 -2.0450 35 1 1.2537 0.6547 -2.5588 36 1 2.8154 -2.6524 -2.6626 37 1 1.1488 0.5384 2.5435 38 1 1.8324 -1.9682 3.6509 39 1 3.2855 -0.9401 3.6506 40 1 1.6814 -2.0137 6.0917 41 1 3.1815 -1.0624 6.2013 42 1 1.8282 -0.8769 8.2815 43 1 0.4717 -0.2247 7.3307 44 1 3.2420 1.0211 7.6446 45 1 1.7149 1.6419 8.3192 46 1 2.7834 4.4214 3.7339 47 1 3.3831 1.1130 4.9150 48 1 1.9291 1.7817 4.1300 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575857512.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:39 Heat of formation + Delta-G solvation = 27.707250 kcal Electronic energy + Delta-G solvation = -29378.240838 eV Core-core repulsion = 25277.969853 eV Total energy + Delta-G solvation = -4100.270985 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.55629 -39.98569 -38.28606 -37.53115 -34.70522 -33.78517 -33.24095 -32.74804 -31.42151 -30.44670 -29.78908 -27.01880 -25.86876 -25.35016 -23.89001 -23.24185 -22.22365 -22.05736 -20.93703 -20.27036 -19.16631 -18.69423 -17.27012 -17.23797 -16.78071 -16.62437 -15.81323 -15.40114 -15.17202 -14.88718 -14.72518 -14.40353 -14.16883 -13.73258 -13.63861 -13.60764 -13.09898 -12.95643 -12.77056 -12.54146 -12.38514 -12.25122 -12.14951 -12.01893 -11.62230 -11.29991 -11.14914 -11.09189 -10.87175 -10.80454 -10.56835 -10.39798 -10.32549 -10.25099 -9.99978 -9.75916 -9.53512 -9.48588 -9.31850 -8.81131 -8.58034 -6.76054 -5.89736 -3.32083 1.22059 2.12321 2.34095 2.72539 2.92497 3.27588 3.33512 3.35450 3.67822 4.18422 4.38677 4.50719 4.58193 4.68781 4.70404 4.81215 4.90947 5.07083 5.09724 5.20873 5.24770 5.40740 5.43747 5.48983 5.51698 5.53442 5.74441 5.86254 5.91403 6.00189 6.04993 6.22802 6.24792 6.34367 6.44080 6.45768 6.58820 6.59962 6.69459 6.76382 6.79584 6.95155 7.21916 7.50824 7.68718 7.68738 8.16838 8.33781 8.36195 9.10653 9.73868 10.31758 11.18139 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013472 B = 0.002569 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.889060 B =10898.084156 C =12421.929084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.072 3.928 3 H 0.094 0.906 4 O -0.346 6.346 5 C 0.136 3.864 6 C -0.018 4.018 7 C -0.015 4.015 8 N -0.268 5.268 9 N -0.079 5.079 10 N -0.387 5.387 11 H 0.447 0.553 12 C 0.514 3.486 13 O -0.528 6.528 14 N -0.715 5.715 15 C 0.132 3.868 16 C -0.128 4.128 17 H 0.070 0.930 18 C -0.100 4.100 19 C -0.133 4.133 20 C 0.143 3.857 21 N -0.592 5.592 22 C -0.250 4.250 23 H 0.065 0.935 24 C 0.002 3.998 25 N -0.903 5.903 26 Si 0.900 3.100 27 H -0.283 1.283 28 H -0.291 1.291 29 H -0.284 1.284 30 C 0.179 3.821 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.198 0.802 37 H 0.405 0.595 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.048 0.952 41 H 0.057 0.943 42 H 0.051 0.949 43 H 0.057 0.943 44 H 0.017 0.983 45 H 0.052 0.948 46 H 0.253 0.747 47 H 0.019 0.981 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.259 -5.264 -10.518 12.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.011 3.989 3 H 0.112 0.888 4 O -0.263 6.263 5 C 0.057 3.943 6 C -0.152 4.152 7 C -0.172 4.172 8 N -0.135 5.135 9 N -0.060 5.060 10 N -0.110 5.110 11 H 0.293 0.707 12 C 0.298 3.702 13 O -0.403 6.403 14 N -0.368 5.368 15 C 0.008 3.992 16 C -0.148 4.148 17 H 0.088 0.912 18 C -0.139 4.139 19 C -0.172 4.172 20 C 0.016 3.984 21 N -0.315 5.315 22 C -0.380 4.380 23 H 0.082 0.918 24 C -0.197 4.197 25 N -0.547 5.547 26 Si 0.730 3.270 27 H -0.209 1.209 28 H -0.217 1.217 29 H -0.211 1.211 30 C 0.053 3.947 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.215 0.785 37 H 0.241 0.759 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.066 0.934 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.035 0.965 45 H 0.071 0.929 46 H 0.063 0.937 47 H 0.037 0.963 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.121 -6.669 -12.058 14.129 hybrid contribution -1.257 2.511 0.763 2.910 sum -4.378 -4.158 -11.295 12.808 Atomic orbital electron populations 1.22266 0.93242 1.03980 1.03502 1.21967 0.95210 0.96771 0.84941 0.88807 1.87980 1.86816 1.33075 1.18397 1.20516 0.99915 0.90601 0.83285 1.21763 1.08464 0.96327 0.88614 1.23553 1.02858 0.94151 0.96610 1.75131 1.16357 1.18257 1.03762 1.78302 1.17719 0.90377 1.19586 1.44933 1.45405 1.12493 1.08158 0.70713 1.20119 0.80832 0.84994 0.84252 1.90714 1.37163 1.25863 1.86589 1.45956 1.53457 1.32238 1.05164 1.21411 0.99339 0.95232 0.83168 1.22148 1.01093 0.99368 0.92219 0.91186 1.21332 1.00473 0.97332 0.94724 1.21984 1.00628 0.98220 0.96369 1.20939 0.96500 0.90906 0.90012 1.44032 1.70173 1.17616 0.99653 1.19163 1.18789 0.90512 1.09528 0.91751 1.25035 0.96721 0.97386 1.00542 1.70046 1.25406 1.37556 1.21707 0.86403 0.80569 0.82437 0.77576 1.20871 1.21662 1.21051 1.20807 0.95702 0.87830 0.90390 0.91301 0.90897 0.90308 0.90691 0.90835 0.78470 0.75940 0.92180 0.91622 0.93352 0.92442 0.93042 0.92422 0.96476 0.92905 0.93672 0.96300 0.89506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.46 9.42 37.16 0.35 -1.11 16 2 C 0.07 0.77 3.14 -27.88 -0.09 0.68 16 3 H 0.09 0.84 7.79 -51.93 -0.40 0.43 16 4 O -0.35 -3.88 8.91 -55.14 -0.49 -4.37 16 5 C 0.14 1.05 6.37 36.00 0.23 1.28 16 6 C -0.02 -0.17 7.28 -82.09 -0.60 -0.77 16 7 C -0.02 -0.18 11.41 -17.73 -0.20 -0.38 16 8 N -0.27 -3.61 12.41 30.24 0.38 -3.24 16 9 N -0.08 -0.94 13.38 60.35 0.81 -0.13 16 10 N -0.39 -3.14 6.98 33.54 0.23 -2.90 16 11 H 0.45 1.66 8.96 -190.40 -1.71 -0.05 16 12 C 0.51 7.49 7.23 -10.99 -0.08 7.41 16 13 O -0.53 -9.73 16.50 -14.36 -0.24 -9.96 16 14 N -0.72 -10.14 5.22 -60.29 -0.31 -10.46 16 15 C 0.13 2.02 5.07 -4.04 -0.02 2.00 16 16 C -0.13 -2.12 2.38 -90.50 -0.21 -2.34 16 17 H 0.07 1.18 8.14 -51.92 -0.42 0.76 16 18 C -0.10 -1.55 5.17 -26.69 -0.14 -1.69 16 19 C -0.13 -2.14 6.08 -26.61 -0.16 -2.31 16 20 C 0.14 2.83 6.52 -3.71 -0.02 2.80 16 21 N -0.59 -13.77 2.99 -172.32 -0.52 -14.28 16 22 C -0.25 -6.40 9.58 -15.06 -0.14 -6.54 16 23 H 0.06 1.63 7.88 -52.49 -0.41 1.22 16 24 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 25 N -0.90 -24.03 11.20 55.49 0.62 -23.41 16 26 Si 0.90 20.02 29.59 -169.99 -5.03 14.99 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 29 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 30 C 0.18 3.80 4.39 -3.71 -0.02 3.78 16 31 H 0.07 0.45 7.87 -51.93 -0.41 0.04 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.63 7.56 -51.92 -0.39 0.24 16 34 H 0.08 0.48 8.08 -51.93 -0.42 0.06 16 35 H 0.07 0.38 7.87 -51.93 -0.41 -0.03 16 36 H 0.20 2.25 7.94 -52.49 -0.42 1.84 16 37 H 0.41 5.39 7.11 -40.82 -0.29 5.10 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16 46 H 0.25 6.55 8.31 -40.82 -0.34 6.21 16 47 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.09 1.98 5.26 -51.93 -0.27 1.71 16 LS Contribution 391.44 15.07 5.90 5.90 Total: -1.00 -33.18 391.44 -8.75 -41.94 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -8.91 Total: 3.15 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -1.19 Total: 2.77 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: 1.21 Total: -54.42 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: -0.73 Total: -14.33 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.03 Total: 14.99 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.18 -8.75 -41.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575857512.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.643 kcal (2) G-P(sol) polarization free energy of solvation -33.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds