Wall clock time and date at job start Tue Mar 31 2020 20:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47363 * 2 1 4 4 O 1.42898 * 109.46577 * 240.00065 * 2 1 3 5 5 C 1.42903 * 114.00174 * 90.00517 * 4 2 1 6 6 C 1.50695 * 109.47185 * 179.97438 * 5 4 2 7 7 C 1.35356 * 126.91464 * 359.97438 * 6 5 4 8 8 N 1.33771 * 106.49441 * 180.29542 * 7 6 5 9 9 N 1.28629 * 108.88970 * 359.56328 * 8 7 6 10 10 N 1.28720 * 110.17780 * 0.44930 * 9 8 7 11 11 H 0.96998 * 125.87223 * 179.69453 * 10 9 8 12 12 C 1.50697 * 109.46810 * 120.00262 * 2 1 3 13 13 O 1.21288 * 119.99987 * 119.99799 * 12 2 1 14 14 N 1.34773 * 120.00203 * 299.99579 * 12 2 1 15 15 C 1.46505 * 120.00123 * 180.02562 * 14 12 2 16 16 C 1.52998 * 109.47140 * 179.97438 * 15 14 12 17 17 H 1.09011 * 109.49728 * 55.06376 * 16 15 14 18 18 C 1.53035 * 109.49873 * 175.15930 * 16 15 14 19 19 C 1.53036 * 109.53896 * 181.31913 * 18 16 15 20 20 C 1.53188 * 109.31246 * 298.63208 * 19 18 16 21 21 N 1.46927 * 108.77333 * 54.64075 * 20 19 18 22 22 C 1.36935 * 120.63660 * 126.37185 * 21 20 19 23 23 H 1.08001 * 119.99639 * 331.83935 * 22 21 20 24 24 C 1.38809 * 120.00676 * 151.83738 * 22 21 20 25 25 N 1.31621 * 119.99479 * 343.08571 * 24 22 21 26 26 Si 1.86795 * 120.00131 * 163.07489 * 24 22 21 27 27 H 1.48501 * 109.47042 * 60.00673 * 26 24 22 28 28 H 1.48508 * 109.46967 * 180.02562 * 26 24 22 29 29 H 1.48495 * 109.47320 * 300.00448 * 26 24 22 30 30 C 1.46927 * 118.73669 * 306.38457 * 21 20 19 31 31 H 1.09005 * 109.47289 * 59.99397 * 1 2 3 32 32 H 1.09000 * 109.47363 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.46659 * 300.00085 * 1 2 3 34 34 H 1.09001 * 109.47026 * 59.99143 * 5 4 2 35 35 H 1.09000 * 109.46568 * 299.99584 * 5 4 2 36 36 H 1.07998 * 126.74941 * 0.03409 * 7 6 5 37 37 H 0.96997 * 119.99721 * 0.02562 * 14 12 2 38 38 H 1.09000 * 109.47041 * 299.99817 * 15 14 12 39 39 H 1.08999 * 109.47318 * 60.00153 * 15 14 12 40 40 H 1.09004 * 109.46011 * 301.33703 * 18 16 15 41 41 H 1.09000 * 109.46163 * 61.29273 * 18 16 15 42 42 H 1.09005 * 109.49592 * 178.68450 * 19 18 16 43 43 H 1.08998 * 109.52637 * 58.60252 * 19 18 16 44 44 H 1.09002 * 109.59091 * 294.84900 * 20 19 18 45 45 H 1.09003 * 109.70616 * 174.49610 * 20 19 18 46 46 H 0.97003 * 119.99538 * 180.02562 * 25 24 22 47 47 H 1.09003 * 109.59326 * 293.82718 * 30 21 20 48 48 H 1.08997 * 109.59105 * 173.39594 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0062 -0.6736 -1.1668 5 6 2.2000 0.1829 -2.2941 6 6 2.7012 -0.6282 -3.4611 7 6 2.9437 -1.9597 -3.4813 8 7 3.3789 -2.2479 -4.7129 9 7 3.3956 -1.1682 -5.4119 10 7 3.0002 -0.1718 -4.6994 11 1 2.9291 0.7481 -4.9985 12 6 2.0323 -0.7105 1.2304 13 8 2.7295 -1.6966 1.1191 14 7 1.7067 -0.2500 2.4545 15 6 2.1955 -0.9404 3.6507 16 6 1.6860 -0.2189 4.9000 17 1 0.5994 -0.1414 4.8577 18 6 2.0943 -1.0064 6.1470 19 6 1.5570 -0.3030 7.3953 20 6 2.1661 1.0995 7.4883 21 7 1.9016 1.8142 6.2321 22 6 1.2983 3.0434 6.2422 23 1 0.6221 3.3064 7.0423 24 6 1.5557 3.9515 5.2244 25 7 2.6033 3.7866 4.4449 26 14 0.4151 5.4071 4.9609 27 1 0.3872 6.2426 6.1883 28 1 0.9060 6.2202 3.8192 29 1 -0.9546 4.9157 4.6653 30 6 2.2965 1.1847 4.9646 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8901 34 1 2.9319 0.9513 -2.0450 35 1 1.2537 0.6547 -2.5588 36 1 2.8154 -2.6524 -2.6626 37 1 1.1488 0.5384 2.5435 38 1 1.8324 -1.9682 3.6509 39 1 3.2855 -0.9401 3.6506 40 1 1.6814 -2.0137 6.0917 41 1 3.1815 -1.0624 6.2013 42 1 1.8282 -0.8769 8.2815 43 1 0.4717 -0.2247 7.3307 44 1 3.2420 1.0211 7.6446 45 1 1.7149 1.6419 8.3192 46 1 2.7834 4.4214 3.7339 47 1 3.3831 1.1130 4.9150 48 1 1.9291 1.7817 4.1300 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001575857512.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:38 Heat of formation + Delta-G solvation = 4.461866 kcal Electronic energy + Delta-G solvation = -29379.248833 eV Core-core repulsion = 25277.969853 eV Total energy + Delta-G solvation = -4101.278980 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.36448 -41.07098 -39.51016 -38.68666 -36.09989 -34.83256 -34.59097 -33.66050 -32.61240 -31.78316 -31.16673 -27.72159 -27.31830 -26.95232 -24.86276 -24.09686 -23.80391 -22.85991 -22.33611 -21.42252 -20.56598 -19.54225 -18.70046 -18.16936 -18.04935 -17.42661 -16.90511 -16.79543 -16.33470 -15.97942 -15.83472 -15.64884 -15.26282 -15.20611 -14.99351 -14.68922 -14.49723 -14.00117 -13.93411 -13.70832 -13.67901 -13.37533 -13.19956 -12.89475 -12.85731 -12.83089 -12.48428 -12.40661 -12.21987 -11.97641 -11.96336 -11.76152 -11.69201 -11.53028 -11.28667 -11.16491 -11.06585 -10.60938 -10.49874 -10.10971 -10.03064 -8.61766 -7.81872 -5.27805 0.45641 1.41541 1.45229 1.52183 1.53559 1.60498 1.61258 2.06258 2.55782 2.85911 3.30133 3.46305 3.63290 3.67504 3.77390 3.94854 4.03390 4.03590 4.08761 4.12215 4.18288 4.32623 4.34451 4.38183 4.44943 4.56138 4.68039 4.75237 4.81930 4.84328 4.90872 4.92599 5.06774 5.13113 5.18143 5.23663 5.26080 5.38691 5.41775 5.50802 5.58821 5.71235 5.81807 5.86655 5.98875 6.44273 6.56550 7.20394 7.23452 7.33194 7.90455 8.43644 9.23474 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013472 B = 0.002569 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.889060 B =10898.084156 C =12421.929084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.079 3.921 3 H 0.116 0.884 4 O -0.372 6.372 5 C 0.132 3.868 6 C -0.001 4.001 7 C -0.042 4.042 8 N -0.303 5.303 9 N -0.100 5.100 10 N -0.363 5.363 11 H 0.467 0.533 12 C 0.508 3.492 13 O -0.573 6.573 14 N -0.712 5.712 15 C 0.139 3.861 16 C -0.110 4.110 17 H 0.074 0.926 18 C -0.100 4.100 19 C -0.121 4.121 20 C 0.135 3.865 21 N -0.611 5.611 22 C -0.265 4.265 23 H 0.062 0.938 24 C -0.043 4.043 25 N -0.929 5.929 26 Si 0.963 3.037 27 H -0.286 1.286 28 H -0.292 1.292 29 H -0.273 1.273 30 C 0.188 3.812 31 H 0.096 0.904 32 H 0.062 0.938 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.111 0.889 36 H 0.192 0.808 37 H 0.410 0.590 38 H 0.072 0.928 39 H 0.048 0.952 40 H 0.079 0.921 41 H 0.052 0.948 42 H 0.080 0.920 43 H 0.058 0.942 44 H 0.007 0.993 45 H 0.050 0.950 46 H 0.251 0.749 47 H -0.015 1.015 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.143 -4.483 -10.698 13.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.018 3.982 3 H 0.134 0.866 4 O -0.289 6.289 5 C 0.054 3.946 6 C -0.136 4.136 7 C -0.199 4.199 8 N -0.169 5.169 9 N -0.080 5.080 10 N -0.089 5.089 11 H 0.317 0.683 12 C 0.294 3.706 13 O -0.452 6.452 14 N -0.365 5.365 15 C 0.015 3.985 16 C -0.131 4.131 17 H 0.092 0.908 18 C -0.138 4.138 19 C -0.160 4.160 20 C 0.010 3.990 21 N -0.334 5.334 22 C -0.395 4.395 23 H 0.079 0.921 24 C -0.239 4.239 25 N -0.575 5.575 26 Si 0.792 3.208 27 H -0.212 1.212 28 H -0.218 1.218 29 H -0.199 1.199 30 C 0.063 3.937 31 H 0.114 0.886 32 H 0.081 0.919 33 H 0.102 0.898 34 H 0.112 0.888 35 H 0.128 0.872 36 H 0.209 0.791 37 H 0.247 0.753 38 H 0.090 0.910 39 H 0.066 0.934 40 H 0.097 0.903 41 H 0.071 0.929 42 H 0.099 0.901 43 H 0.077 0.923 44 H 0.025 0.975 45 H 0.069 0.931 46 H 0.060 0.940 47 H 0.003 0.997 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.024 -5.869 -12.243 14.476 hybrid contribution -0.613 2.321 0.901 2.564 sum -5.637 -3.548 -11.342 13.153 Atomic orbital electron populations 1.22258 0.91251 1.03825 1.05083 1.21963 0.96490 0.96733 0.83030 0.86648 1.87949 1.87168 1.34587 1.19236 1.20832 1.02254 0.89971 0.81529 1.21957 1.06791 0.95605 0.89260 1.23637 1.04342 0.95581 0.96330 1.75079 1.17709 1.19476 1.04670 1.78211 1.18837 0.90844 1.20090 1.44879 1.43657 1.12975 1.07392 0.68273 1.20928 0.79819 0.84492 0.85313 1.90689 1.39233 1.27997 1.87256 1.45953 1.53225 1.32214 1.05073 1.21253 0.98288 0.95771 0.83194 1.21900 1.00730 0.96735 0.93692 0.90790 1.21365 1.00385 0.98540 0.93556 1.21863 1.00276 0.95914 0.97975 1.21108 0.96236 0.92973 0.88714 1.44324 1.70233 1.17593 1.01263 1.19433 1.18838 0.91639 1.09561 0.92065 1.25700 0.97923 0.99788 1.00466 1.70193 1.26766 1.38410 1.22140 0.85421 0.79146 0.79338 0.76936 1.21243 1.21807 1.19912 1.20616 0.93758 0.90114 0.89260 0.88569 0.91934 0.89847 0.88782 0.87159 0.79081 0.75306 0.90967 0.93382 0.90283 0.92923 0.90130 0.92309 0.97455 0.93150 0.94009 0.99680 0.91298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.37 9.42 71.98 0.68 -1.69 16 2 C 0.08 1.52 3.14 29.85 0.09 1.62 16 3 H 0.12 1.73 7.79 -2.39 -0.02 1.71 16 4 O -0.37 -7.71 8.91 -129.94 -1.16 -8.87 16 5 C 0.13 1.65 6.37 71.23 0.45 2.10 16 6 C 0.00 -0.02 7.28 41.35 0.30 0.28 16 7 C -0.04 -0.99 11.41 83.73 0.96 -0.04 16 8 N -0.30 -8.30 12.41 -58.25 -0.72 -9.02 16 9 N -0.10 -2.30 13.38 37.02 0.50 -1.80 16 10 N -0.36 -5.25 6.98 -47.79 -0.33 -5.58 16 11 H 0.47 2.26 8.96 -219.96 -1.97 0.29 16 12 C 0.51 14.53 7.23 87.66 0.63 15.17 16 13 O -0.57 -21.36 16.50 15.98 0.26 -21.10 16 14 N -0.71 -19.80 5.22 -463.05 -2.42 -22.22 16 15 C 0.14 4.19 5.07 86.38 0.44 4.63 16 16 C -0.11 -3.57 2.38 -10.72 -0.03 -3.59 16 17 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 18 C -0.10 -2.91 5.17 30.62 0.16 -2.75 16 19 C -0.12 -3.66 6.08 30.67 0.19 -3.47 16 20 C 0.14 5.31 6.52 86.36 0.56 5.87 16 21 N -0.61 -28.56 2.99 -699.09 -2.09 -30.65 16 22 C -0.26 -13.56 9.58 84.03 0.81 -12.75 16 23 H 0.06 3.11 7.88 -2.91 -0.02 3.08 16 24 C -0.04 -2.20 4.92 84.86 0.42 -1.78 16 25 N -0.93 -50.00 11.20 21.65 0.24 -49.75 16 26 Si 0.96 40.81 29.59 68.60 2.03 42.84 16 27 H -0.29 -12.19 7.11 99.48 0.71 -11.49 16 28 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 29 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 30 C 0.19 8.10 4.39 86.36 0.38 8.48 16 31 H 0.10 0.86 7.87 -2.38 -0.02 0.84 16 32 H 0.06 1.03 8.14 -2.39 -0.02 1.02 16 33 H 0.08 1.12 7.56 -2.38 -0.02 1.10 16 34 H 0.09 0.87 8.08 -2.39 -0.02 0.85 16 35 H 0.11 0.62 7.87 -2.39 -0.02 0.60 16 36 H 0.19 4.61 7.94 -2.91 -0.02 4.59 16 37 H 0.41 10.57 7.11 -92.71 -0.66 9.91 16 38 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 41 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 43 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 45 H 0.05 1.95 7.93 -2.39 -0.02 1.93 16 46 H 0.25 13.04 8.31 -92.71 -0.77 12.27 16 47 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 48 H 0.07 3.19 5.26 -2.39 -0.01 3.18 16 Total: -1.00 -74.18 391.44 0.70 -73.48 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: -1.65 Total: 20.59 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: 6.04 Total: 12.08 kcal Atomic # 7 Polarization: -114.19 SS G_CDS: -4.83 Total: -119.02 kcal Atomic # 8 Polarization: -29.07 SS G_CDS: -0.89 Total: -29.97 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.84 kcal Total: -74.18 0.70 -73.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575857512.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.942 kcal (2) G-P(sol) polarization free energy of solvation -74.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds