Wall clock time and date at job start Tue Mar 31 2020 20:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46803 * 2 1 4 4 O 1.42892 * 109.47486 * 239.99728 * 2 1 3 5 5 C 1.42901 * 114.00121 * 89.99888 * 4 2 1 6 6 C 1.50702 * 109.47444 * 179.97438 * 5 4 2 7 7 C 1.35347 * 126.90826 * 0.02562 * 6 5 4 8 8 N 1.33774 * 106.49524 * 179.97438 * 7 6 5 9 9 N 1.28634 * 108.88224 * 359.97438 * 8 7 6 10 10 N 1.28711 * 110.17920 * 359.76045 * 9 8 7 11 11 H 0.97001 * 125.86312 * 180.24626 * 10 9 8 12 12 C 1.50700 * 109.46775 * 119.99730 * 2 1 3 13 13 O 1.21280 * 120.00001 * 115.00385 * 12 2 1 14 14 N 1.34778 * 119.99854 * 295.00394 * 12 2 1 15 15 C 1.46505 * 119.99662 * 180.02562 * 14 12 2 16 16 C 1.53002 * 109.47054 * 179.97438 * 15 14 12 17 17 H 1.09003 * 109.49530 * 305.06649 * 16 15 14 18 18 C 1.53037 * 109.49990 * 184.99648 * 16 15 14 19 19 C 1.53036 * 109.52971 * 178.65347 * 18 16 15 20 20 C 1.53173 * 109.32579 * 61.37355 * 19 18 16 21 21 N 1.46921 * 108.76821 * 305.35560 * 20 19 18 22 22 C 1.36932 * 120.63360 * 233.63500 * 21 20 19 23 23 H 1.08001 * 120.00859 * 151.80725 * 22 21 20 24 24 C 1.38814 * 119.99659 * 331.80042 * 22 21 20 25 25 N 1.31627 * 119.99987 * 343.09709 * 24 22 21 26 26 Si 1.86799 * 119.99883 * 163.09101 * 24 22 21 27 27 H 1.48505 * 109.47234 * 60.00768 * 26 24 22 28 28 H 1.48508 * 109.47069 * 180.02562 * 26 24 22 29 29 H 1.48496 * 109.47489 * 299.99968 * 26 24 22 30 30 C 1.46931 * 118.73776 * 53.60610 * 21 20 19 31 31 H 1.08998 * 109.47406 * 300.00401 * 1 2 3 32 32 H 1.09005 * 109.46641 * 60.00604 * 1 2 3 33 33 H 1.09003 * 109.46803 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.47269 * 300.00235 * 5 4 2 35 35 H 1.09004 * 109.46748 * 60.00011 * 5 4 2 36 36 H 1.08007 * 126.75539 * 359.97438 * 7 6 5 37 37 H 0.96998 * 120.00395 * 359.97438 * 14 12 2 38 38 H 1.08992 * 109.47667 * 60.00079 * 15 14 12 39 39 H 1.09003 * 109.47195 * 299.99323 * 15 14 12 40 40 H 1.09002 * 109.46187 * 298.67264 * 18 16 15 41 41 H 1.09003 * 109.45539 * 58.64342 * 18 16 15 42 42 H 1.08999 * 109.50251 * 181.30918 * 19 18 16 43 43 H 1.09007 * 109.50147 * 301.41013 * 19 18 16 44 44 H 1.08997 * 109.58626 * 185.57347 * 20 19 18 45 45 H 1.09002 * 109.70311 * 65.21363 * 20 19 18 46 46 H 0.96996 * 119.99377 * 179.97438 * 25 24 22 47 47 H 1.08998 * 109.58689 * 186.60458 * 30 21 20 48 48 H 1.08999 * 109.70176 * 66.25460 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1666 5 6 2.2002 0.1829 -2.2940 6 6 2.7017 -0.6283 -3.4609 7 6 2.9434 -1.9598 -3.4812 8 7 3.3724 -2.2493 -4.7147 9 7 3.3943 -1.1686 -5.4121 10 7 2.9947 -0.1731 -4.7009 11 1 2.9190 0.7461 -5.0016 12 6 2.0323 -0.7104 1.2305 13 8 2.6530 -1.7466 1.1216 14 7 1.7917 -0.1941 2.4520 15 6 2.2805 -0.8844 3.6482 16 6 1.8761 -0.0940 4.8943 17 1 2.2344 0.9317 4.8066 18 6 2.4912 -0.7458 6.1347 19 6 2.1148 0.0635 7.3778 20 6 0.5915 0.0665 7.5387 21 7 -0.0143 0.5571 6.2933 22 6 -0.9011 1.6003 6.3125 23 1 -0.9958 2.2446 5.4509 24 6 -1.6785 1.8296 7.4394 25 7 -1.8200 0.8848 8.3448 26 14 -2.5238 3.4792 7.6710 27 1 -3.4532 3.7225 6.5385 28 1 -3.2870 3.4699 8.9449 29 1 -1.5031 4.5569 7.7140 30 6 0.3499 -0.0926 5.0268 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0277 0.0005 34 1 1.2540 0.6546 -2.5588 35 1 2.9321 0.9513 -2.0449 36 1 2.8151 -2.6525 -2.6625 37 1 1.2956 0.6349 2.5391 38 1 3.3668 -0.9622 3.6046 39 1 1.8462 -1.8831 3.6943 40 1 2.1133 -1.7632 6.2355 41 1 3.5761 -0.7699 6.0319 42 1 2.5723 -0.3878 8.2582 43 1 2.4710 1.0878 7.2668 44 1 0.3125 0.7220 8.3636 45 1 0.2414 -0.9456 7.7415 46 1 -2.3629 1.0453 9.1324 47 1 -0.0887 0.4577 4.1944 48 1 -0.0183 -1.1185 5.0208 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575857513.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:41 Heat of formation + Delta-G solvation = 28.555422 kcal Electronic energy + Delta-G solvation = -28925.847550 eV Core-core repulsion = 24825.613344 eV Total energy + Delta-G solvation = -4100.234205 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.65674 -40.16732 -38.41246 -37.61457 -34.88704 -33.88840 -33.27151 -32.74395 -31.32594 -30.50214 -30.07343 -27.14324 -25.90612 -25.33611 -23.98577 -23.34431 -22.21952 -22.11551 -21.04932 -20.47817 -19.19732 -18.80449 -17.44522 -17.38369 -16.80630 -16.61559 -15.95328 -15.53093 -15.18378 -15.02743 -14.84296 -14.50103 -14.34461 -13.98250 -13.61013 -13.48001 -13.27526 -12.95018 -12.82343 -12.63232 -12.39444 -12.25095 -12.20797 -12.11185 -11.77397 -11.35412 -11.24997 -11.06924 -10.97128 -10.76576 -10.57553 -10.54131 -10.30782 -10.23547 -10.00433 -9.81500 -9.58277 -9.48593 -9.43721 -9.02024 -8.52584 -6.73744 -5.85389 -3.28898 1.11928 2.00246 2.24815 2.53217 2.76384 3.31474 3.38257 3.38701 3.51364 4.04373 4.38076 4.41401 4.42873 4.54279 4.56111 4.61498 4.75253 4.96482 5.02907 5.11416 5.23687 5.30975 5.33398 5.37797 5.40185 5.56075 5.77451 5.80569 5.89124 5.90870 5.93661 6.17175 6.26177 6.31728 6.34301 6.40191 6.50708 6.54206 6.64679 6.71205 6.80355 6.89886 7.34346 7.46714 7.61719 7.71349 8.07538 8.16582 8.37994 9.14022 9.77582 10.34616 11.22762 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019429 B = 0.002034 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.768508 B =13760.309884 C =14847.699005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.074 3.926 3 H 0.090 0.910 4 O -0.345 6.345 5 C 0.137 3.863 6 C -0.021 4.021 7 C -0.014 4.014 8 N -0.267 5.267 9 N -0.078 5.078 10 N -0.387 5.387 11 H 0.447 0.553 12 C 0.512 3.488 13 O -0.522 6.522 14 N -0.720 5.720 15 C 0.128 3.872 16 C -0.118 4.118 17 H 0.073 0.927 18 C -0.100 4.100 19 C -0.141 4.141 20 C 0.169 3.831 21 N -0.591 5.591 22 C -0.256 4.256 23 H 0.064 0.936 24 C 0.003 3.997 25 N -0.900 5.900 26 Si 0.902 3.098 27 H -0.283 1.283 28 H -0.290 1.290 29 H -0.284 1.284 30 C 0.154 3.846 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.199 0.801 37 H 0.403 0.597 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.057 0.943 41 H 0.047 0.953 42 H 0.050 0.950 43 H 0.054 0.946 44 H 0.086 0.914 45 H 0.018 0.982 46 H 0.255 0.745 47 H 0.049 0.951 48 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.795 2.565 -18.240 20.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.013 3.987 3 H 0.108 0.892 4 O -0.262 6.262 5 C 0.058 3.942 6 C -0.154 4.154 7 C -0.171 4.171 8 N -0.134 5.134 9 N -0.059 5.059 10 N -0.110 5.110 11 H 0.293 0.707 12 C 0.296 3.704 13 O -0.398 6.398 14 N -0.373 5.373 15 C 0.005 3.995 16 C -0.138 4.138 17 H 0.091 0.909 18 C -0.138 4.138 19 C -0.181 4.181 20 C 0.043 3.957 21 N -0.313 5.313 22 C -0.385 4.385 23 H 0.082 0.918 24 C -0.196 4.196 25 N -0.544 5.544 26 Si 0.732 3.268 27 H -0.209 1.209 28 H -0.216 1.216 29 H -0.210 1.210 30 C 0.027 3.973 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.216 0.784 37 H 0.238 0.762 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.104 0.896 45 H 0.036 0.964 46 H 0.065 0.935 47 H 0.068 0.932 48 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 8.679 0.982 -19.493 21.361 hybrid contribution -1.229 2.504 1.135 3.011 sum 7.451 3.486 -18.358 20.117 Atomic orbital electron populations 1.22272 0.92850 1.04424 1.03581 1.21960 0.95498 0.96304 0.84960 0.89243 1.88005 1.86754 1.33082 1.18390 1.20502 0.99847 0.90523 0.83315 1.21738 1.08771 0.96404 0.88535 1.23575 1.02830 0.94095 0.96566 1.75152 1.16401 1.18133 1.03723 1.78315 1.17537 0.90358 1.19644 1.44931 1.45386 1.12596 1.08059 0.70730 1.20175 0.80227 0.85730 0.84238 1.90732 1.39548 1.23020 1.86455 1.45991 1.57780 1.28055 1.05501 1.21490 0.98742 0.96343 0.82931 1.21961 1.00050 0.99155 0.92657 0.90876 1.21342 0.98445 0.99275 0.94748 1.22165 1.00960 0.99088 0.95862 1.20793 0.86619 0.98068 0.90221 1.44016 1.49098 1.37365 1.00850 1.19084 1.14285 1.03608 1.01556 0.91845 1.25059 0.97617 0.97739 0.99154 1.70027 1.41357 1.30943 1.12101 0.86383 0.79165 0.84039 0.77214 1.20908 1.21620 1.21047 1.20891 0.90292 0.95968 0.90123 0.90138 0.91230 0.90652 0.90779 0.90882 0.78435 0.76222 0.91865 0.91395 0.92414 0.93414 0.93161 0.92766 0.89609 0.96393 0.93515 0.93233 0.96311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 9.48 37.16 0.35 -0.89 16 2 C 0.07 0.62 3.13 -27.88 -0.09 0.53 16 3 H 0.09 0.48 7.79 -51.93 -0.40 0.07 16 4 O -0.35 -3.25 8.92 -55.09 -0.49 -3.74 16 5 C 0.14 0.79 6.37 36.01 0.23 1.02 16 6 C -0.02 -0.17 7.28 -82.09 -0.60 -0.76 16 7 C -0.01 -0.15 11.41 -17.74 -0.20 -0.35 16 8 N -0.27 -3.33 12.41 30.24 0.38 -2.95 16 9 N -0.08 -0.83 13.38 60.35 0.81 -0.03 16 10 N -0.39 -2.61 6.98 33.54 0.23 -2.37 16 11 H 0.45 1.01 8.96 -190.40 -1.71 -0.70 16 12 C 0.51 6.27 7.18 -10.99 -0.08 6.19 16 13 O -0.52 -8.67 16.51 -14.30 -0.24 -8.91 16 14 N -0.72 -8.23 5.29 -60.29 -0.32 -8.54 16 15 C 0.13 1.70 5.07 -4.04 -0.02 1.68 16 16 C -0.12 -1.77 2.37 -90.50 -0.21 -1.98 16 17 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 18 C -0.10 -1.55 5.17 -26.69 -0.14 -1.69 16 19 C -0.14 -2.54 6.08 -26.62 -0.16 -2.70 16 20 C 0.17 3.83 5.30 -3.72 -0.02 3.81 16 21 N -0.59 -13.79 2.99 -172.33 -0.52 -14.31 16 22 C -0.26 -6.58 9.58 -15.06 -0.14 -6.73 16 23 H 0.06 1.57 7.88 -52.49 -0.41 1.16 16 24 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 25 N -0.90 -25.26 11.20 55.49 0.62 -24.64 16 26 Si 0.90 20.70 29.59 -169.99 -5.03 15.67 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 28 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 29 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 30 C 0.15 2.88 5.60 -3.71 -0.02 2.86 16 31 H 0.08 0.54 7.92 -51.93 -0.41 0.13 16 32 H 0.07 0.36 7.87 -51.93 -0.41 -0.05 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.25 7.87 -51.93 -0.41 -0.16 16 35 H 0.07 0.29 8.09 -51.93 -0.42 -0.13 16 36 H 0.20 2.05 7.94 -52.48 -0.42 1.63 16 37 H 0.40 3.87 7.49 -40.82 -0.31 3.57 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.05 0.99 8.14 -51.92 -0.42 0.56 16 44 H 0.09 2.20 6.06 -51.93 -0.31 1.89 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 47 H 0.05 0.86 7.14 -51.93 -0.37 0.49 16 48 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 392.26 15.07 5.91 5.91 Total: -1.00 -34.49 392.26 -8.78 -43.26 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -8.94 Total: -0.36 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -1.19 Total: 1.00 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: 1.20 Total: -52.84 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: -0.73 Total: -12.65 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.03 Total: 15.67 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.49 -8.78 -43.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575857513.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.819 kcal (2) G-P(sol) polarization free energy of solvation -34.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds