Wall clock time and date at job start Tue Mar 31 2020 20:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46803 * 2 1 4 4 O 1.42892 * 109.47486 * 239.99728 * 2 1 3 5 5 C 1.42901 * 114.00121 * 89.99888 * 4 2 1 6 6 C 1.50702 * 109.47444 * 179.97438 * 5 4 2 7 7 C 1.35347 * 126.90826 * 0.02562 * 6 5 4 8 8 N 1.33774 * 106.49524 * 179.97438 * 7 6 5 9 9 N 1.28634 * 108.88224 * 359.97438 * 8 7 6 10 10 N 1.28711 * 110.17920 * 359.76045 * 9 8 7 11 11 H 0.97001 * 125.86312 * 180.24626 * 10 9 8 12 12 C 1.50700 * 109.46775 * 119.99730 * 2 1 3 13 13 O 1.21280 * 120.00001 * 115.00385 * 12 2 1 14 14 N 1.34778 * 119.99854 * 295.00394 * 12 2 1 15 15 C 1.46505 * 119.99662 * 180.02562 * 14 12 2 16 16 C 1.53002 * 109.47054 * 179.97438 * 15 14 12 17 17 H 1.09003 * 109.49530 * 305.06649 * 16 15 14 18 18 C 1.53037 * 109.49990 * 184.99648 * 16 15 14 19 19 C 1.53036 * 109.52971 * 178.65347 * 18 16 15 20 20 C 1.53173 * 109.32579 * 61.37355 * 19 18 16 21 21 N 1.46921 * 108.76821 * 305.35560 * 20 19 18 22 22 C 1.36932 * 120.63360 * 233.63500 * 21 20 19 23 23 H 1.08001 * 120.00859 * 151.80725 * 22 21 20 24 24 C 1.38814 * 119.99659 * 331.80042 * 22 21 20 25 25 N 1.31627 * 119.99987 * 343.09709 * 24 22 21 26 26 Si 1.86799 * 119.99883 * 163.09101 * 24 22 21 27 27 H 1.48505 * 109.47234 * 60.00768 * 26 24 22 28 28 H 1.48508 * 109.47069 * 180.02562 * 26 24 22 29 29 H 1.48496 * 109.47489 * 299.99968 * 26 24 22 30 30 C 1.46931 * 118.73776 * 53.60610 * 21 20 19 31 31 H 1.08998 * 109.47406 * 300.00401 * 1 2 3 32 32 H 1.09005 * 109.46641 * 60.00604 * 1 2 3 33 33 H 1.09003 * 109.46803 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.47269 * 300.00235 * 5 4 2 35 35 H 1.09004 * 109.46748 * 60.00011 * 5 4 2 36 36 H 1.08007 * 126.75539 * 359.97438 * 7 6 5 37 37 H 0.96998 * 120.00395 * 359.97438 * 14 12 2 38 38 H 1.08992 * 109.47667 * 60.00079 * 15 14 12 39 39 H 1.09003 * 109.47195 * 299.99323 * 15 14 12 40 40 H 1.09002 * 109.46187 * 298.67264 * 18 16 15 41 41 H 1.09003 * 109.45539 * 58.64342 * 18 16 15 42 42 H 1.08999 * 109.50251 * 181.30918 * 19 18 16 43 43 H 1.09007 * 109.50147 * 301.41013 * 19 18 16 44 44 H 1.08997 * 109.58626 * 185.57347 * 20 19 18 45 45 H 1.09002 * 109.70311 * 65.21363 * 20 19 18 46 46 H 0.96996 * 119.99377 * 179.97438 * 25 24 22 47 47 H 1.08998 * 109.58689 * 186.60458 * 30 21 20 48 48 H 1.08999 * 109.70176 * 66.25460 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1666 5 6 2.2002 0.1829 -2.2940 6 6 2.7017 -0.6283 -3.4609 7 6 2.9434 -1.9598 -3.4812 8 7 3.3724 -2.2493 -4.7147 9 7 3.3943 -1.1686 -5.4121 10 7 2.9947 -0.1731 -4.7009 11 1 2.9190 0.7461 -5.0016 12 6 2.0323 -0.7104 1.2305 13 8 2.6530 -1.7466 1.1216 14 7 1.7917 -0.1941 2.4520 15 6 2.2805 -0.8844 3.6482 16 6 1.8761 -0.0940 4.8943 17 1 2.2344 0.9317 4.8066 18 6 2.4912 -0.7458 6.1347 19 6 2.1148 0.0635 7.3778 20 6 0.5915 0.0665 7.5387 21 7 -0.0143 0.5571 6.2933 22 6 -0.9011 1.6003 6.3125 23 1 -0.9958 2.2446 5.4509 24 6 -1.6785 1.8296 7.4394 25 7 -1.8200 0.8848 8.3448 26 14 -2.5238 3.4792 7.6710 27 1 -3.4532 3.7225 6.5385 28 1 -3.2870 3.4699 8.9449 29 1 -1.5031 4.5569 7.7140 30 6 0.3499 -0.0926 5.0268 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0277 0.0005 34 1 1.2540 0.6546 -2.5588 35 1 2.9321 0.9513 -2.0449 36 1 2.8151 -2.6525 -2.6625 37 1 1.2956 0.6349 2.5391 38 1 3.3668 -0.9622 3.6046 39 1 1.8462 -1.8831 3.6943 40 1 2.1133 -1.7632 6.2355 41 1 3.5761 -0.7699 6.0319 42 1 2.5723 -0.3878 8.2582 43 1 2.4710 1.0878 7.2668 44 1 0.3125 0.7220 8.3636 45 1 0.2414 -0.9456 7.7415 46 1 -2.3629 1.0453 9.1324 47 1 -0.0887 0.4577 4.1944 48 1 -0.0183 -1.1185 5.0208 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001575857513.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:41 Heat of formation + Delta-G solvation = 3.522470 kcal Electronic energy + Delta-G solvation = -28926.933060 eV Core-core repulsion = 24825.613344 eV Total energy + Delta-G solvation = -4101.319716 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.34774 -41.06446 -39.51818 -38.67622 -36.20692 -34.72733 -34.56349 -33.55711 -32.31015 -32.22314 -31.20185 -27.69325 -27.26265 -26.95613 -24.83012 -24.08532 -23.76324 -22.84782 -22.43749 -21.44623 -20.55948 -19.53422 -18.67784 -18.13654 -17.98993 -17.40377 -16.83969 -16.78354 -16.35120 -16.08761 -15.82897 -15.61166 -15.34323 -15.20613 -15.01357 -14.64037 -14.48492 -13.98256 -13.90745 -13.72234 -13.63682 -13.30673 -13.16813 -12.99133 -12.83521 -12.82068 -12.47137 -12.38890 -12.27988 -11.95866 -11.94395 -11.79089 -11.67623 -11.54462 -11.29967 -11.14786 -11.06397 -10.59364 -10.49087 -10.08719 -10.03850 -8.64226 -7.83248 -5.29178 0.48034 1.44174 1.46847 1.49791 1.52582 1.58643 1.62819 2.07099 2.54094 2.88462 3.31809 3.48839 3.62833 3.69412 3.79604 3.98094 4.02579 4.03740 4.07006 4.09772 4.12883 4.35921 4.37616 4.43594 4.47539 4.61142 4.64854 4.77431 4.80468 4.85135 4.91592 4.95449 5.03750 5.13987 5.14551 5.26101 5.29120 5.36627 5.41761 5.51002 5.60629 5.70098 5.81375 5.90058 6.02629 6.42293 6.59709 7.18172 7.26928 7.35278 7.90050 8.42537 9.22933 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019429 B = 0.002034 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.768508 B =13760.309884 C =14847.699005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.081 3.919 3 H 0.131 0.869 4 O -0.376 6.376 5 C 0.134 3.866 6 C -0.001 4.001 7 C -0.045 4.045 8 N -0.305 5.305 9 N -0.102 5.102 10 N -0.362 5.362 11 H 0.468 0.532 12 C 0.507 3.493 13 O -0.573 6.573 14 N -0.713 5.713 15 C 0.139 3.861 16 C -0.099 4.099 17 H 0.081 0.919 18 C -0.099 4.099 19 C -0.130 4.130 20 C 0.172 3.828 21 N -0.609 5.609 22 C -0.258 4.258 23 H 0.075 0.925 24 C -0.056 4.056 25 N -0.938 5.938 26 Si 0.966 3.034 27 H -0.273 1.273 28 H -0.301 1.301 29 H -0.277 1.277 30 C 0.152 3.848 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.051 0.949 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.190 0.810 37 H 0.414 0.586 38 H 0.071 0.929 39 H 0.053 0.947 40 H 0.052 0.948 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.055 0.945 44 H 0.050 0.950 45 H -0.010 1.010 46 H 0.248 0.752 47 H 0.063 0.937 48 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.434 5.393 -19.896 22.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.021 3.979 3 H 0.148 0.852 4 O -0.294 6.294 5 C 0.056 3.944 6 C -0.136 4.136 7 C -0.202 4.202 8 N -0.171 5.171 9 N -0.082 5.082 10 N -0.088 5.088 11 H 0.318 0.682 12 C 0.294 3.706 13 O -0.452 6.452 14 N -0.366 5.366 15 C 0.014 3.986 16 C -0.119 4.119 17 H 0.099 0.901 18 C -0.137 4.137 19 C -0.169 4.169 20 C 0.047 3.953 21 N -0.332 5.332 22 C -0.388 4.388 23 H 0.093 0.907 24 C -0.251 4.251 25 N -0.584 5.584 26 Si 0.795 3.205 27 H -0.198 1.198 28 H -0.228 1.228 29 H -0.203 1.203 30 C 0.026 3.974 31 H 0.104 0.896 32 H 0.115 0.885 33 H 0.070 0.930 34 H 0.127 0.873 35 H 0.121 0.879 36 H 0.207 0.793 37 H 0.251 0.749 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.097 0.903 42 H 0.084 0.916 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.008 0.992 46 H 0.057 0.943 47 H 0.081 0.919 48 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges 9.325 3.861 -21.207 23.486 hybrid contribution -1.444 1.610 1.643 2.716 sum 7.881 5.471 -19.565 21.790 Atomic orbital electron populations 1.22281 0.91931 1.03411 1.05215 1.21982 0.95898 0.97249 0.82798 0.85156 1.87978 1.87063 1.34910 1.19439 1.20860 1.02343 0.89894 0.81343 1.22015 1.06681 0.95588 0.89278 1.23644 1.04635 0.95712 0.96215 1.75092 1.17840 1.19468 1.04735 1.78218 1.18868 0.90862 1.20225 1.44871 1.43580 1.13050 1.07325 0.68214 1.20993 0.79091 0.85157 0.85379 1.90713 1.41940 1.25352 1.87197 1.45909 1.57497 1.28215 1.04992 1.21238 0.99053 0.95414 0.82872 1.21709 0.96874 0.99884 0.93438 0.90063 1.21347 1.00398 0.98418 0.93533 1.21988 0.96951 0.99894 0.98031 1.20615 0.89957 0.95432 0.89343 1.44297 1.49053 1.37459 1.02351 1.19526 1.13625 1.04065 1.01569 0.90705 1.25842 0.99078 1.00775 0.99370 1.70202 1.42782 1.32838 1.12589 0.85358 0.78205 0.80296 0.76673 1.19820 1.22796 1.20295 1.21040 0.93014 0.94760 0.88557 0.89593 0.88496 0.93018 0.87288 0.87934 0.79278 0.74882 0.91108 0.92874 0.92936 0.90265 0.91555 0.92642 0.93139 0.99184 0.94347 0.91859 0.97912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.89 9.48 71.98 0.68 -1.21 16 2 C 0.08 1.08 3.13 29.85 0.09 1.17 16 3 H 0.13 0.67 7.79 -2.39 -0.02 0.65 16 4 O -0.38 -6.09 8.92 -129.99 -1.16 -7.25 16 5 C 0.13 1.00 6.37 71.24 0.45 1.45 16 6 C 0.00 -0.01 7.28 41.36 0.30 0.29 16 7 C -0.04 -0.95 11.41 83.73 0.96 0.00 16 8 N -0.30 -7.73 12.41 -58.25 -0.72 -8.45 16 9 N -0.10 -2.10 13.38 37.02 0.50 -1.60 16 10 N -0.36 -4.09 6.98 -47.79 -0.33 -4.42 16 11 H 0.47 0.64 8.96 -219.96 -1.97 -1.34 16 12 C 0.51 11.45 7.18 87.66 0.63 12.08 16 13 O -0.57 -18.76 16.51 15.96 0.26 -18.50 16 14 N -0.71 -14.56 5.29 -463.05 -2.45 -17.01 16 15 C 0.14 3.41 5.07 86.38 0.44 3.85 16 16 C -0.10 -2.76 2.37 -10.72 -0.03 -2.78 16 17 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 18 C -0.10 -2.86 5.17 30.62 0.16 -2.70 16 19 C -0.13 -4.50 6.08 30.66 0.19 -4.31 16 20 C 0.17 7.99 5.30 86.36 0.46 8.45 16 21 N -0.61 -28.37 2.99 -699.14 -2.09 -30.46 16 22 C -0.26 -13.15 9.58 84.03 0.81 -12.34 16 23 H 0.08 3.57 7.88 -2.91 -0.02 3.55 16 24 C -0.06 -2.97 4.92 84.86 0.42 -2.55 16 25 N -0.94 -54.28 11.20 21.65 0.24 -54.03 16 26 Si 0.97 42.65 29.59 68.60 2.03 44.68 16 27 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 28 H -0.30 -13.71 7.11 99.48 0.71 -13.01 16 29 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 30 C 0.15 5.52 5.60 86.36 0.48 6.01 16 31 H 0.09 0.86 7.92 -2.39 -0.02 0.84 16 32 H 0.10 0.56 7.87 -2.38 -0.02 0.54 16 33 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.11 0.12 7.87 -2.39 -0.02 0.10 16 35 H 0.10 0.24 8.09 -2.38 -0.02 0.22 16 36 H 0.19 4.17 7.94 -2.91 -0.02 4.15 16 37 H 0.41 6.60 7.49 -92.71 -0.69 5.90 16 38 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 44 H 0.05 2.69 6.06 -2.39 -0.01 2.67 16 45 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 46 H 0.25 14.02 8.31 -92.71 -0.77 13.24 16 47 H 0.06 2.09 7.14 -2.39 -0.02 2.07 16 48 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 Total: -1.00 -79.42 392.26 0.63 -78.80 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -1.68 Total: 10.86 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: 6.04 Total: 7.39 kcal Atomic # 7 Polarization: -111.12 SS G_CDS: -4.86 Total: -115.98 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -0.90 Total: -25.75 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -79.42 0.63 -78.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575857513.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.319 kcal (2) G-P(sol) polarization free energy of solvation -79.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds