Wall clock time and date at job start Tue Mar 31 2020 20:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47259 * 2 1 4 4 O 1.42906 * 109.47259 * 120.00057 * 2 1 3 5 5 C 1.42902 * 114.00099 * 270.00152 * 4 2 1 6 6 C 1.50698 * 109.47105 * 180.02562 * 5 4 2 7 7 C 1.35349 * 126.91254 * 359.97438 * 6 5 4 8 8 N 1.33771 * 106.49485 * 179.97438 * 7 6 5 9 9 N 1.28637 * 108.88877 * 359.97438 * 8 7 6 10 10 N 1.28717 * 110.17320 * 359.76026 * 9 8 7 11 11 H 0.97008 * 125.86796 * 180.23705 * 10 9 8 12 12 C 1.50698 * 109.47150 * 240.00087 * 2 1 3 13 13 O 1.21289 * 119.99811 * 245.00097 * 12 2 1 14 14 N 1.34767 * 120.00300 * 64.99903 * 12 2 1 15 15 C 1.46502 * 120.00637 * 180.02562 * 14 12 2 16 16 C 1.52997 * 109.47269 * 180.02562 * 15 14 12 17 17 H 1.08996 * 109.49927 * 54.93460 * 16 15 14 18 18 C 1.53043 * 109.49502 * 175.00350 * 16 15 14 19 19 C 1.53036 * 109.53940 * 181.31779 * 18 16 15 20 20 C 1.53192 * 109.31280 * 298.63365 * 19 18 16 21 21 N 1.46926 * 108.77692 * 54.63305 * 20 19 18 22 22 C 1.36932 * 120.63437 * 126.37170 * 21 20 19 23 23 H 1.07998 * 120.00024 * 208.01250 * 22 21 20 24 24 C 1.38817 * 119.99771 * 28.01014 * 22 21 20 25 25 N 1.31622 * 120.00082 * 17.53622 * 24 22 21 26 26 Si 1.86799 * 119.99935 * 197.53903 * 24 22 21 27 27 H 1.48492 * 109.47248 * 94.06461 * 26 24 22 28 28 H 1.48503 * 109.46946 * 214.06691 * 26 24 22 29 29 H 1.48502 * 109.47045 * 334.06135 * 26 24 22 30 30 C 1.46927 * 118.73452 * 306.64500 * 21 20 19 31 31 H 1.09002 * 109.46803 * 299.99976 * 1 2 3 32 32 H 1.08995 * 109.47449 * 59.99941 * 1 2 3 33 33 H 1.08998 * 109.47259 * 180.02562 * 1 2 3 34 34 H 1.09006 * 109.46925 * 300.00014 * 5 4 2 35 35 H 1.09003 * 109.47292 * 59.99488 * 5 4 2 36 36 H 1.07998 * 126.75320 * 359.97438 * 7 6 5 37 37 H 0.97004 * 120.00309 * 0.02562 * 14 12 2 38 38 H 1.09004 * 109.46916 * 59.99988 * 15 14 12 39 39 H 1.09004 * 109.47129 * 300.00144 * 15 14 12 40 40 H 1.08994 * 109.46541 * 61.29154 * 18 16 15 41 41 H 1.09000 * 109.45954 * 301.33509 * 18 16 15 42 42 H 1.08992 * 109.50137 * 178.68089 * 19 18 16 43 43 H 1.09003 * 109.52586 * 58.59892 * 19 18 16 44 44 H 1.09001 * 109.58623 * 294.84661 * 20 19 18 45 45 H 1.09001 * 109.70784 * 174.49138 * 20 19 18 46 46 H 0.96996 * 119.99748 * 179.97438 * 25 24 22 47 47 H 1.09006 * 109.58772 * 173.14442 * 30 21 20 48 48 H 1.08994 * 109.58876 * 293.56652 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.2001 0.1829 2.2941 6 6 2.7015 -0.6283 3.4610 7 6 2.9432 -1.9599 3.4814 8 7 3.3732 -2.2490 4.7146 9 7 3.3968 -1.1681 5.4116 10 7 3.0068 -0.1708 4.6973 11 1 2.9405 0.7501 4.9950 12 6 2.0323 -0.7104 -1.2304 13 8 2.6530 -1.7467 -1.1214 14 7 1.7919 -0.1942 -2.4519 15 6 2.2797 -0.8851 -3.6482 16 6 1.8756 -0.0945 -4.8942 17 1 2.2348 0.9309 -4.8068 18 6 2.4899 -0.7471 -6.1347 19 6 2.1134 0.0617 -7.3781 20 6 0.5899 0.0653 -7.5380 21 7 -0.0152 0.5565 -6.2925 22 6 -0.9018 1.5999 -6.3117 23 1 -0.9979 2.2428 -5.4492 24 6 -1.6769 1.8314 -7.4398 25 7 -1.8269 0.8839 -8.3410 26 14 -2.5071 3.4876 -7.6788 27 1 -1.6382 4.3620 -8.5068 28 1 -3.8105 3.2937 -8.3635 29 1 -2.7328 4.1237 -6.3560 30 6 0.3537 -0.0892 -5.0254 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 2.9320 0.9513 2.0451 35 1 1.2538 0.6547 2.5589 36 1 2.8142 -2.6526 2.6630 37 1 1.2958 0.6348 -2.5392 38 1 1.8447 -1.8835 -3.6940 39 1 3.3661 -0.9637 -3.6048 40 1 2.1117 -1.7643 -6.2349 41 1 3.5749 -0.7718 -6.0324 42 1 2.5705 -0.3902 -8.2583 43 1 2.4701 1.0859 -7.2683 44 1 0.2412 -0.9477 -7.7389 45 1 0.3085 0.7190 -8.3636 46 1 -2.3689 1.0456 -9.1290 47 1 -0.0815 0.4641 -4.1930 48 1 -0.0146 -1.1150 -5.0172 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575857514.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:44 Heat of formation + Delta-G solvation = 28.466724 kcal Electronic energy + Delta-G solvation = -28927.207413 eV Core-core repulsion = 24826.969361 eV Total energy + Delta-G solvation = -4100.238052 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.65528 -40.16967 -38.42264 -37.62663 -34.89055 -33.88790 -33.27524 -32.74577 -31.32902 -30.50895 -30.08493 -27.14347 -25.91307 -25.34179 -23.98747 -23.34429 -22.22341 -22.12245 -21.05648 -20.47925 -19.19796 -18.80544 -17.44716 -17.38685 -16.80491 -16.61750 -15.95310 -15.53511 -15.18712 -15.03077 -14.84772 -14.50037 -14.35107 -13.98005 -13.61024 -13.48200 -13.27742 -12.95305 -12.82940 -12.63128 -12.40898 -12.25171 -12.21100 -12.11562 -11.77349 -11.36180 -11.25037 -11.07999 -10.97128 -10.79397 -10.56338 -10.54008 -10.28289 -10.23499 -10.00471 -9.81786 -9.58587 -9.48875 -9.43712 -9.02313 -8.53178 -6.74728 -5.85839 -3.28747 1.11854 2.00168 2.24786 2.53031 2.76254 3.31152 3.37920 3.39816 3.51227 4.04326 4.37950 4.41150 4.42828 4.54264 4.55970 4.61356 4.75223 4.96428 5.02242 5.11323 5.23422 5.30963 5.33328 5.37537 5.39343 5.55753 5.77057 5.80552 5.88817 5.90860 5.93658 6.16478 6.25993 6.31801 6.34202 6.40011 6.50466 6.53965 6.64286 6.70753 6.79861 6.89594 7.33677 7.46450 7.61204 7.71526 8.07482 8.16380 8.37361 9.13592 9.77315 10.34172 11.22467 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019456 B = 0.002034 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.815619 B =13763.518970 C =14846.534860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.074 3.926 3 H 0.090 0.910 4 O -0.345 6.345 5 C 0.137 3.863 6 C -0.021 4.021 7 C -0.014 4.014 8 N -0.267 5.267 9 N -0.078 5.078 10 N -0.387 5.387 11 H 0.447 0.553 12 C 0.512 3.488 13 O -0.523 6.523 14 N -0.720 5.720 15 C 0.129 3.871 16 C -0.117 4.117 17 H 0.073 0.927 18 C -0.100 4.100 19 C -0.142 4.142 20 C 0.168 3.832 21 N -0.591 5.591 22 C -0.255 4.255 23 H 0.065 0.935 24 C 0.003 3.997 25 N -0.900 5.900 26 Si 0.902 3.098 27 H -0.288 1.288 28 H -0.291 1.291 29 H -0.279 1.279 30 C 0.154 3.846 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.199 0.801 37 H 0.403 0.597 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.047 0.953 42 H 0.050 0.950 43 H 0.054 0.946 44 H 0.018 0.982 45 H 0.086 0.914 46 H 0.254 0.746 47 H 0.049 0.951 48 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.865 2.565 18.272 20.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.013 3.987 3 H 0.108 0.892 4 O -0.262 6.262 5 C 0.058 3.942 6 C -0.154 4.154 7 C -0.171 4.171 8 N -0.134 5.134 9 N -0.058 5.058 10 N -0.110 5.110 11 H 0.293 0.707 12 C 0.296 3.704 13 O -0.398 6.398 14 N -0.373 5.373 15 C 0.005 3.995 16 C -0.138 4.138 17 H 0.091 0.909 18 C -0.138 4.138 19 C -0.181 4.181 20 C 0.043 3.957 21 N -0.314 5.314 22 C -0.384 4.384 23 H 0.082 0.918 24 C -0.196 4.196 25 N -0.544 5.544 26 Si 0.732 3.268 27 H -0.215 1.215 28 H -0.218 1.218 29 H -0.204 1.204 30 C 0.027 3.973 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.216 0.784 37 H 0.238 0.762 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.036 0.964 45 H 0.104 0.896 46 H 0.064 0.936 47 H 0.068 0.932 48 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 8.749 0.984 19.538 21.430 hybrid contribution -1.205 2.508 -1.159 3.014 sum 7.544 3.492 18.379 20.172 Atomic orbital electron populations 1.22270 0.92845 1.04427 1.03586 1.21959 0.95501 0.96302 0.84956 0.89242 1.88008 1.86758 1.33079 1.18388 1.20502 0.99859 0.90520 0.83310 1.21739 1.08644 0.96353 0.88709 1.23572 1.02740 0.94144 0.96603 1.75151 1.16346 1.18193 1.03723 1.78319 1.17744 0.90282 1.19502 1.44937 1.45400 1.12422 1.08223 0.70729 1.20175 0.80227 0.85731 0.84236 1.90735 1.39551 1.23017 1.86458 1.45990 1.57800 1.28038 1.05500 1.21490 0.98767 0.96327 0.82910 1.21882 1.00067 0.99174 0.92696 0.90886 1.21341 0.98464 0.99276 0.94728 1.22165 1.00951 0.99096 0.95875 1.20799 0.86639 0.98058 0.90226 1.44021 1.49003 1.37562 1.00766 1.19146 1.14306 1.03546 1.01447 0.91753 1.25049 0.97634 0.97729 0.99195 1.70043 1.41368 1.30699 1.12259 0.86290 0.78645 0.83992 0.77887 1.21473 1.21774 1.20446 1.20808 0.90342 0.96013 0.90108 0.91230 0.90134 0.90649 0.90895 0.90763 0.78437 0.76220 0.91387 0.91848 0.92404 0.93399 0.93148 0.92766 0.96406 0.89606 0.93583 0.93225 0.96330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 9.48 37.16 0.35 -0.89 16 2 C 0.07 0.62 3.13 -27.89 -0.09 0.53 16 3 H 0.09 0.48 7.79 -51.93 -0.40 0.07 16 4 O -0.35 -3.25 8.92 -55.09 -0.49 -3.74 16 5 C 0.14 0.79 6.37 36.00 0.23 1.02 16 6 C -0.02 -0.17 7.28 -82.09 -0.60 -0.76 16 7 C -0.01 -0.15 11.41 -17.74 -0.20 -0.35 16 8 N -0.27 -3.33 12.41 30.23 0.38 -2.95 16 9 N -0.08 -0.83 13.38 60.35 0.81 -0.02 16 10 N -0.39 -2.61 6.98 33.54 0.23 -2.37 16 11 H 0.45 1.01 8.96 -190.39 -1.71 -0.70 16 12 C 0.51 6.26 7.18 -10.99 -0.08 6.18 16 13 O -0.52 -8.67 16.51 -14.31 -0.24 -8.90 16 14 N -0.72 -8.22 5.29 -60.29 -0.32 -8.53 16 15 C 0.13 1.70 5.07 -4.04 -0.02 1.68 16 16 C -0.12 -1.77 2.36 -90.72 -0.21 -1.98 16 17 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 18 C -0.10 -1.54 5.17 -26.69 -0.14 -1.68 16 19 C -0.14 -2.54 6.08 -26.61 -0.16 -2.70 16 20 C 0.17 3.82 5.32 -3.71 -0.02 3.80 16 21 N -0.59 -13.79 3.00 -172.58 -0.52 -14.31 16 22 C -0.25 -6.56 9.58 -15.06 -0.14 -6.70 16 23 H 0.06 1.60 7.89 -52.49 -0.41 1.19 16 24 C 0.00 0.08 4.90 -17.43 -0.09 -0.01 16 25 N -0.90 -25.25 11.22 55.49 0.62 -24.63 16 26 Si 0.90 20.72 29.59 -169.99 -5.03 15.69 16 27 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 28 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 29 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 30 C 0.15 2.87 5.58 -3.93 -0.02 2.85 16 31 H 0.07 0.36 7.87 -51.93 -0.41 -0.05 16 32 H 0.08 0.54 7.93 -51.93 -0.41 0.13 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.28 8.09 -51.93 -0.42 -0.14 16 35 H 0.07 0.25 7.87 -51.93 -0.41 -0.16 16 36 H 0.20 2.04 7.94 -52.49 -0.42 1.63 16 37 H 0.40 3.87 7.48 -40.82 -0.31 3.57 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.09 2.20 6.06 -51.93 -0.31 1.89 16 46 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 47 H 0.05 0.86 7.13 -51.93 -0.37 0.49 16 48 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 392.22 15.07 5.91 5.91 Total: -1.00 -34.52 392.22 -8.78 -43.29 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -8.94 Total: -0.44 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -1.19 Total: 1.00 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: 1.20 Total: -52.82 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: -0.73 Total: -12.64 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.03 Total: 15.69 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.52 -8.78 -43.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575857514.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.761 kcal (2) G-P(sol) polarization free energy of solvation -34.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds