Wall clock time and date at job start Tue Mar 31 2020 20:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47057 * 2 1 4 4 O 1.42900 * 109.47195 * 119.99827 * 2 1 3 5 5 C 1.42904 * 113.99950 * 270.00174 * 4 2 1 6 6 C 1.50699 * 109.47074 * 179.97438 * 5 4 2 7 7 C 1.35350 * 126.91240 * 359.97438 * 6 5 4 8 8 N 1.33763 * 106.49696 * 179.97438 * 7 6 5 9 9 N 1.28639 * 108.88810 * 0.02562 * 8 7 6 10 10 N 1.28717 * 110.17160 * 359.75655 * 9 8 7 11 11 H 0.97002 * 125.86089 * 180.24098 * 10 9 8 12 12 C 1.50696 * 109.47146 * 239.99782 * 2 1 3 13 13 O 1.21285 * 120.00026 * 244.99704 * 12 2 1 14 14 N 1.34777 * 120.00230 * 65.00015 * 12 2 1 15 15 C 1.46495 * 120.00500 * 180.27327 * 14 12 2 16 16 C 1.52999 * 109.47699 * 179.72500 * 15 14 12 17 17 C 1.53041 * 109.45947 * 295.03067 * 16 15 14 18 18 C 1.53194 * 109.31216 * 178.59775 * 17 16 15 19 19 N 1.46930 * 108.76246 * 54.65777 * 18 17 16 20 20 C 1.36928 * 120.62991 * 126.36495 * 19 18 17 21 21 H 1.08002 * 120.00031 * 331.85169 * 20 19 18 22 22 C 1.38815 * 120.00472 * 151.85506 * 20 19 18 23 23 N 1.31626 * 119.99324 * 343.07012 * 22 20 19 24 24 Si 1.86799 * 120.00450 * 163.06895 * 22 20 19 25 25 H 1.48501 * 109.46742 * 60.00265 * 24 22 20 26 26 H 1.48503 * 109.46998 * 180.02562 * 24 22 20 27 27 H 1.48495 * 109.47035 * 300.00139 * 24 22 20 28 28 C 1.46924 * 118.73607 * 306.37627 * 19 18 17 29 29 C 1.53038 * 109.46440 * 174.97433 * 16 15 14 30 30 H 1.08996 * 109.47275 * 300.00058 * 1 2 3 31 31 H 1.09000 * 109.47178 * 60.00486 * 1 2 3 32 32 H 1.09003 * 109.47057 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47012 * 300.00113 * 5 4 2 34 34 H 1.09001 * 109.46990 * 59.99915 * 5 4 2 35 35 H 1.08002 * 126.75432 * 359.94732 * 7 6 5 36 36 H 0.97000 * 119.99602 * 359.97438 * 14 12 2 37 37 H 1.09001 * 109.47176 * 299.73332 * 15 14 12 38 38 H 1.09001 * 109.46872 * 59.72064 * 15 14 12 39 39 H 1.08998 * 109.45569 * 55.00120 * 16 15 14 40 40 H 1.09001 * 109.49686 * 298.56458 * 17 16 15 41 41 H 1.08998 * 109.49874 * 58.65958 * 17 16 15 42 42 H 1.08992 * 109.59670 * 294.86627 * 18 17 16 43 43 H 1.09002 * 109.70008 * 174.50217 * 18 17 16 44 44 H 0.96994 * 119.99415 * 179.97438 * 23 22 20 45 45 H 1.08993 * 109.58930 * 293.82851 * 28 19 18 46 46 H 1.08999 * 109.69927 * 173.46642 * 28 19 18 47 47 H 1.09006 * 109.49777 * 301.34069 * 29 16 15 48 48 H 1.09000 * 109.49534 * 61.43196 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2000 0.1830 2.2941 6 6 2.7002 -0.6283 3.4614 7 6 2.9410 -1.9600 3.4821 8 7 3.3701 -2.2493 4.7156 9 7 3.3931 -1.1684 5.4127 10 7 3.0035 -0.1711 4.6983 11 1 2.9370 0.7496 4.9961 12 6 2.0323 -0.7104 -1.2304 13 8 2.6530 -1.7467 -1.1214 14 7 1.7919 -0.1943 -2.4520 15 6 2.2750 -0.8880 -3.6484 16 6 1.8655 -0.1008 -4.8948 17 6 0.3400 -0.0965 -5.0167 18 6 -0.0677 0.7219 -6.2459 19 7 0.6299 0.1862 -7.4229 20 6 -0.0698 -0.1828 -8.5406 21 1 -1.0922 -0.5192 -8.4510 22 6 0.5349 -0.1247 -9.7887 23 7 1.6334 0.5811 -9.9555 24 14 -0.2101 -1.0480 -11.2316 25 1 -1.5885 -0.5530 -11.4773 26 1 0.6195 -0.8259 -12.4430 27 1 -0.2534 -2.4995 -10.9212 28 6 2.0925 0.0540 -7.3776 29 6 2.4759 -0.7566 -6.1355 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.9319 0.9514 2.0450 34 1 1.2537 0.6547 2.5588 35 1 2.8116 -2.6530 2.6639 36 1 1.2952 0.6343 -2.5392 37 1 3.3615 -0.9667 -3.6090 38 1 1.8398 -1.8865 -3.6900 39 1 2.2261 0.9244 -4.8114 40 1 -0.0192 -1.1199 -5.1252 41 1 -0.0952 0.3494 -4.1224 42 1 0.2110 1.7653 -6.0993 43 1 -1.1450 0.6489 -6.3951 44 1 2.0561 0.6214 -10.8275 45 1 2.5473 1.0429 -7.3233 46 1 2.4427 -0.4608 -8.2722 47 1 3.5613 -0.7807 -6.0376 48 1 2.0964 -1.7737 -6.2333 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001575862565.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:11 Heat of formation + Delta-G solvation = 3.386022 kcal Electronic energy + Delta-G solvation = -28669.114189 eV Core-core repulsion = 24567.788557 eV Total energy + Delta-G solvation = -4101.325633 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.34614 -41.07229 -39.51862 -38.67335 -36.35602 -34.63648 -34.51414 -33.51778 -32.56606 -31.68855 -31.24852 -28.40806 -27.68199 -26.04264 -24.75578 -24.09122 -23.73806 -22.85209 -22.54299 -21.42704 -20.62537 -19.55458 -18.69217 -18.15548 -18.03048 -17.40412 -16.82696 -16.77850 -16.31440 -15.94993 -15.83689 -15.57281 -15.27792 -15.20476 -15.07958 -14.78425 -14.54149 -13.99928 -13.90483 -13.72383 -13.56715 -13.28296 -13.14950 -12.97027 -12.84309 -12.77633 -12.53750 -12.39129 -12.25784 -12.01095 -11.93780 -11.81241 -11.67581 -11.58469 -11.22618 -11.12616 -11.07481 -10.61209 -10.49432 -10.08581 -10.04490 -8.63925 -7.85615 -5.29974 0.48240 1.44641 1.46850 1.46976 1.49830 1.55854 1.63540 2.06407 2.52648 2.88902 3.28968 3.49311 3.68955 3.74640 3.79338 3.88910 3.98124 3.99417 4.06871 4.11486 4.13989 4.36146 4.38441 4.48208 4.55757 4.57861 4.73648 4.76426 4.80084 4.83542 4.89843 4.97021 5.06017 5.14327 5.17806 5.30935 5.32763 5.33967 5.42031 5.48998 5.58635 5.68481 5.82192 5.90890 6.03621 6.42049 6.61767 7.18170 7.29203 7.35425 7.91332 8.41131 9.20126 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.039460 B = 0.001690 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.417275 B =16559.416639 C =16760.341638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.081 3.919 3 H 0.132 0.868 4 O -0.378 6.378 5 C 0.135 3.865 6 C -0.001 4.001 7 C -0.046 4.046 8 N -0.306 5.306 9 N -0.102 5.102 10 N -0.362 5.362 11 H 0.468 0.532 12 C 0.505 3.495 13 O -0.576 6.576 14 N -0.709 5.709 15 C 0.137 3.863 16 C -0.076 4.076 17 C -0.114 4.114 18 C 0.139 3.861 19 N -0.612 5.612 20 C -0.262 4.262 21 H 0.064 0.936 22 C -0.051 4.051 23 N -0.934 5.934 24 Si 0.962 3.038 25 H -0.275 1.275 26 H -0.295 1.295 27 H -0.281 1.281 28 C 0.177 3.823 29 C -0.124 4.124 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.050 0.950 33 H 0.102 0.898 34 H 0.112 0.888 35 H 0.190 0.810 36 H 0.417 0.583 37 H 0.060 0.940 38 H 0.052 0.948 39 H 0.081 0.919 40 H 0.047 0.953 41 H 0.091 0.909 42 H 0.021 0.979 43 H 0.051 0.949 44 H 0.249 0.751 45 H 0.000 1.000 46 H 0.048 0.952 47 H 0.067 0.933 48 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.707 7.237 26.602 27.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.020 3.980 3 H 0.149 0.851 4 O -0.296 6.296 5 C 0.057 3.943 6 C -0.136 4.136 7 C -0.203 4.203 8 N -0.172 5.172 9 N -0.082 5.082 10 N -0.088 5.088 11 H 0.318 0.682 12 C 0.292 3.708 13 O -0.455 6.455 14 N -0.363 5.363 15 C 0.013 3.987 16 C -0.095 4.095 17 C -0.153 4.153 18 C 0.014 3.986 19 N -0.336 5.336 20 C -0.392 4.392 21 H 0.082 0.918 22 C -0.246 4.246 23 N -0.580 5.580 24 Si 0.791 3.209 25 H -0.200 1.200 26 H -0.221 1.221 27 H -0.208 1.208 28 C 0.051 3.949 29 C -0.164 4.164 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.069 0.931 33 H 0.120 0.880 34 H 0.129 0.871 35 H 0.207 0.793 36 H 0.255 0.745 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.100 0.900 40 H 0.066 0.934 41 H 0.109 0.891 42 H 0.039 0.961 43 H 0.069 0.931 44 H 0.058 0.942 45 H 0.018 0.982 46 H 0.067 0.933 47 H 0.086 0.914 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.636 5.735 27.903 28.493 hybrid contribution -0.656 0.652 -2.276 2.456 sum -1.292 6.387 25.627 26.442 Atomic orbital electron populations 1.22284 0.91493 1.03460 1.05473 1.22019 0.96218 0.97174 0.82573 0.85073 1.87987 1.87140 1.34983 1.19520 1.20862 1.02408 0.89814 0.81264 1.22042 1.06553 0.95510 0.89465 1.23643 1.04617 0.95823 0.96237 1.75092 1.17775 1.19573 1.04778 1.78226 1.19087 0.90799 1.20115 1.44873 1.43592 1.12879 1.07447 0.68189 1.21089 0.79088 0.85151 0.85503 1.90731 1.41923 1.25635 1.87221 1.45830 1.57659 1.28119 1.04664 1.21235 0.98747 0.95521 0.83180 1.21137 0.96311 0.99643 0.92440 1.21937 0.94786 1.00325 0.98227 1.21098 0.95764 0.94772 0.86995 1.44315 1.02800 1.73760 1.12712 1.19464 0.97782 1.36330 0.85637 0.91802 1.25747 0.99112 1.00019 0.99723 1.70164 1.22843 1.41973 1.23025 0.85416 0.77836 0.78820 0.78841 1.20034 1.22122 1.20770 1.20553 0.83421 0.95425 0.95456 1.21991 0.99700 0.99207 0.95475 0.88557 0.88893 0.93080 0.87992 0.87067 0.79343 0.74544 0.92179 0.92939 0.90046 0.93414 0.89085 0.96110 0.93075 0.94204 0.98178 0.93335 0.91442 0.93452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.13 9.48 71.98 0.68 -0.45 16 2 C 0.08 0.83 3.13 29.85 0.09 0.93 16 3 H 0.13 0.27 7.79 -2.39 -0.02 0.25 16 4 O -0.38 -5.40 8.92 -129.99 -1.16 -6.56 16 5 C 0.13 0.76 6.37 71.24 0.45 1.22 16 6 C 0.00 -0.01 7.28 41.36 0.30 0.29 16 7 C -0.05 -0.94 11.41 83.73 0.96 0.02 16 8 N -0.31 -7.54 12.41 -58.26 -0.72 -8.26 16 9 N -0.10 -2.03 13.38 37.02 0.50 -1.53 16 10 N -0.36 -3.69 6.98 -47.79 -0.33 -4.03 16 11 H 0.47 0.09 8.96 -219.96 -1.97 -1.89 16 12 C 0.51 10.23 7.18 87.66 0.63 10.86 16 13 O -0.58 -18.31 16.51 15.94 0.26 -18.05 16 14 N -0.71 -12.16 5.23 -463.07 -2.42 -14.58 16 15 C 0.14 3.25 5.06 86.38 0.44 3.69 16 16 C -0.08 -2.03 2.19 -10.77 -0.02 -2.05 16 17 C -0.11 -3.10 5.25 30.67 0.16 -2.94 16 18 C 0.14 5.12 6.52 86.36 0.56 5.68 16 19 N -0.61 -29.34 2.99 -699.12 -2.09 -31.44 16 20 C -0.26 -14.10 9.58 84.04 0.81 -13.30 16 21 H 0.06 3.36 7.89 -2.91 -0.02 3.34 16 22 C -0.05 -2.79 4.92 84.86 0.42 -2.38 16 23 N -0.93 -54.51 11.19 21.65 0.24 -54.26 16 24 Si 0.96 44.47 29.59 68.60 2.03 46.50 16 25 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 26 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 27 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 28 C 0.18 8.18 5.30 86.36 0.46 8.63 16 29 C -0.12 -4.32 5.36 30.67 0.16 -4.15 16 30 H 0.10 0.17 7.87 -2.39 -0.02 0.15 16 31 H 0.09 0.34 7.92 -2.39 -0.02 0.32 16 32 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.10 0.07 8.08 -2.39 -0.02 0.05 16 34 H 0.11 -0.13 7.87 -2.39 -0.02 -0.15 16 35 H 0.19 4.01 7.94 -2.91 -0.02 3.98 16 36 H 0.42 4.32 7.43 -92.71 -0.69 3.64 16 37 H 0.06 1.52 8.14 -2.39 -0.02 1.51 16 38 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.09 1.70 7.15 -2.39 -0.02 1.69 16 42 H 0.02 0.75 8.14 -2.39 -0.02 0.74 16 43 H 0.05 1.88 7.93 -2.39 -0.02 1.86 16 44 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 45 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 46 H 0.05 2.60 6.06 -2.39 -0.01 2.59 16 47 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 48 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -82.74 392.02 0.72 -82.02 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -1.68 Total: 4.14 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: 6.10 Total: 6.05 kcal Atomic # 7 Polarization: -109.26 SS G_CDS: -4.83 Total: -114.10 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.90 Total: -24.61 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -82.74 0.72 -82.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575862565.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.407 kcal (2) G-P(sol) polarization free energy of solvation -82.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds