Wall clock time and date at job start Tue Mar 31 2020 20:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47118 * 2 1 4 4 O 1.42902 * 109.47385 * 240.00158 * 2 1 3 5 5 C 1.42906 * 113.99925 * 89.99585 * 4 2 1 6 6 C 1.50700 * 109.46982 * 180.02562 * 5 4 2 7 7 C 1.35353 * 126.91131 * 359.97438 * 6 5 4 8 8 N 1.33773 * 106.49169 * 179.97438 * 7 6 5 9 9 N 1.28633 * 108.88846 * 0.02562 * 8 7 6 10 10 N 1.28715 * 110.17651 * 359.97438 * 9 8 7 11 11 H 0.97002 * 125.86640 * 179.97438 * 10 9 8 12 12 C 1.50700 * 109.47313 * 120.00372 * 2 1 3 13 13 O 1.21283 * 120.00306 * 119.99981 * 12 2 1 14 14 N 1.34776 * 119.99538 * 299.99927 * 12 2 1 15 15 C 1.46507 * 119.99763 * 179.97438 * 14 12 2 16 16 C 1.52997 * 109.47054 * 180.02562 * 15 14 12 17 17 C 1.53041 * 109.45967 * 295.02854 * 16 15 14 18 18 C 1.53192 * 109.31561 * 178.60330 * 17 16 15 19 19 N 1.46931 * 108.76583 * 54.65452 * 18 17 16 20 20 C 1.36936 * 120.63282 * 126.36546 * 19 18 17 21 21 H 1.07995 * 119.99801 * 331.86447 * 20 19 18 22 22 C 1.38809 * 120.00248 * 151.86282 * 20 19 18 23 23 N 1.31628 * 119.99810 * 343.06377 * 22 20 19 24 24 Si 1.86796 * 120.00164 * 163.06056 * 22 20 19 25 25 H 1.48498 * 109.46801 * 0.02562 * 24 22 20 26 26 H 1.48495 * 109.47009 * 120.00322 * 24 22 20 27 27 H 1.48502 * 109.46944 * 240.00040 * 24 22 20 28 28 C 1.46929 * 118.73404 * 306.38760 * 19 18 17 29 29 C 1.53039 * 109.46129 * 174.97555 * 16 15 14 30 30 H 1.09003 * 109.47045 * 60.00144 * 1 2 3 31 31 H 1.09002 * 109.46497 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46950 * 299.99676 * 1 2 3 33 33 H 1.09005 * 109.46756 * 60.00377 * 5 4 2 34 34 H 1.08991 * 109.47146 * 300.00211 * 5 4 2 35 35 H 1.07997 * 126.75193 * 359.97438 * 7 6 5 36 36 H 0.97000 * 120.00506 * 0.02562 * 14 12 2 37 37 H 1.09000 * 109.47341 * 300.00006 * 15 14 12 38 38 H 1.08996 * 109.47028 * 60.00517 * 15 14 12 39 39 H 1.08993 * 109.46186 * 55.00058 * 16 15 14 40 40 H 1.09005 * 109.49967 * 298.56442 * 17 16 15 41 41 H 1.09003 * 109.50141 * 58.66122 * 17 16 15 42 42 H 1.09007 * 109.59814 * 294.86799 * 18 17 16 43 43 H 1.08999 * 109.70960 * 174.50483 * 18 17 16 44 44 H 0.96991 * 119.99869 * 180.02562 * 23 22 20 45 45 H 1.09002 * 109.58529 * 293.81791 * 28 19 18 46 46 H 1.08998 * 109.69755 * 173.47003 * 28 19 18 47 47 H 1.09003 * 109.49429 * 301.33497 * 29 16 15 48 48 H 1.08998 * 109.49991 * 61.39869 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.2001 0.1830 -2.2941 6 6 2.7003 -0.6283 -3.4614 7 6 2.9421 -1.9599 -3.4818 8 7 3.3698 -2.2494 -4.7158 9 7 3.3920 -1.1687 -5.4130 10 7 2.9980 -0.1721 -4.7000 11 1 2.9272 0.7479 -4.9990 12 6 2.0324 -0.7105 1.2304 13 8 2.7297 -1.6966 1.1191 14 7 1.7068 -0.2500 2.4545 15 6 2.1947 -0.9410 3.6507 16 6 1.6843 -0.2201 4.8999 17 6 2.2941 1.1821 4.9644 18 6 1.7540 1.9134 6.1973 19 7 2.0105 1.0889 7.3861 20 6 2.6704 1.6094 8.4671 21 1 3.3833 2.4091 8.3309 22 6 2.4230 1.1094 9.7382 23 7 1.3441 0.3899 9.9638 24 14 3.6211 1.4574 11.1284 25 1 4.7449 2.2832 10.6181 26 1 2.9210 2.1910 12.2131 27 1 4.1495 0.1750 11.6591 28 6 1.5460 -0.3051 7.3926 29 6 2.0883 -1.0113 6.1461 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.9320 0.9514 -2.0450 34 1 1.2539 0.6547 -2.5588 35 1 2.8147 -2.6524 -2.6629 36 1 1.1488 0.5384 2.5436 37 1 1.8310 -1.9685 3.6505 38 1 3.2847 -0.9414 3.6509 39 1 0.5981 -0.1419 4.8558 40 1 3.3792 1.1041 5.0338 41 1 2.0256 1.7373 4.0656 42 1 0.6812 2.0722 6.0874 43 1 2.2566 2.8747 6.3040 44 1 1.1710 0.0408 10.8520 45 1 0.4563 -0.3271 7.3801 46 1 1.9114 -0.8099 8.2868 47 1 1.6731 -2.0176 6.0885 48 1 3.1752 -1.0690 6.2039 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575862566.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:15 Heat of formation + Delta-G solvation = 29.433847 kcal Electronic energy + Delta-G solvation = -28661.889999 eV Core-core repulsion = 24561.693884 eV Total energy + Delta-G solvation = -4100.196114 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.69798 -40.25879 -38.48125 -37.64914 -35.03394 -33.93656 -33.31282 -32.65287 -31.34216 -30.61666 -29.73398 -27.21564 -26.99058 -24.77184 -23.70612 -23.36869 -22.30711 -22.19165 -21.14672 -20.53995 -19.23563 -18.87765 -17.52950 -17.45625 -16.82487 -16.73728 -16.03447 -15.55778 -15.19407 -15.14086 -14.81990 -14.55234 -14.16296 -13.84560 -13.77690 -13.56200 -13.31477 -13.22877 -12.88980 -12.77309 -12.41926 -12.38718 -12.19886 -11.92050 -11.84277 -11.38945 -11.29724 -11.03072 -11.01455 -10.76855 -10.62448 -10.55704 -10.29718 -10.23531 -10.01063 -9.82485 -9.60223 -9.52380 -9.44870 -9.09224 -8.50731 -6.70925 -5.82700 -3.25271 1.07620 1.94708 2.20701 2.44920 2.69933 3.34526 3.42849 3.43003 3.44661 3.98202 4.29419 4.36438 4.43246 4.46480 4.48574 4.53582 4.66338 4.90183 4.99743 5.06149 5.15928 5.19014 5.20575 5.31454 5.37438 5.55019 5.63602 5.79999 5.86242 5.87451 5.97483 6.07669 6.26291 6.28065 6.33281 6.38303 6.45436 6.55073 6.63745 6.70730 6.75763 6.91900 7.31821 7.38719 7.62249 7.76479 8.03538 8.08518 8.41687 9.17921 9.81325 10.37668 11.25824 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.033470 B = 0.001700 C = 0.001696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.371129 B =16470.603444 C =16501.306820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.073 3.927 3 H 0.091 0.909 4 O -0.345 6.345 5 C 0.138 3.862 6 C -0.022 4.022 7 C -0.014 4.014 8 N -0.267 5.267 9 N -0.077 5.077 10 N -0.387 5.387 11 H 0.447 0.553 12 C 0.511 3.489 13 O -0.520 6.520 14 N -0.721 5.721 15 C 0.124 3.876 16 C -0.090 4.090 17 C -0.127 4.127 18 C 0.145 3.855 19 N -0.592 5.592 20 C -0.252 4.252 21 H 0.065 0.935 22 C 0.002 3.998 23 N -0.903 5.903 24 Si 0.901 3.099 25 H -0.278 1.278 26 H -0.290 1.290 27 H -0.289 1.289 28 C 0.171 3.829 29 C -0.133 4.133 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.198 0.802 36 H 0.400 0.600 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.060 0.940 41 H 0.046 0.954 42 H 0.016 0.984 43 H 0.052 0.948 44 H 0.253 0.747 45 H 0.018 0.982 46 H 0.088 0.912 47 H 0.051 0.949 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.000 3.316 -24.714 25.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.012 3.988 3 H 0.109 0.891 4 O -0.262 6.262 5 C 0.059 3.941 6 C -0.155 4.155 7 C -0.170 4.170 8 N -0.134 5.134 9 N -0.058 5.058 10 N -0.109 5.109 11 H 0.293 0.707 12 C 0.295 3.705 13 O -0.395 6.395 14 N -0.374 5.374 15 C 0.001 3.999 16 C -0.109 4.109 17 C -0.166 4.166 18 C 0.019 3.981 19 N -0.315 5.315 20 C -0.382 4.382 21 H 0.083 0.917 22 C -0.196 4.196 23 N -0.547 5.547 24 Si 0.731 3.269 25 H -0.203 1.203 26 H -0.217 1.217 27 H -0.215 1.215 28 C 0.046 3.954 29 C -0.173 4.173 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.215 0.785 36 H 0.235 0.765 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.064 0.936 42 H 0.034 0.966 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.036 0.964 46 H 0.106 0.894 47 H 0.070 0.930 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.971 1.703 -25.967 26.098 hybrid contribution -0.232 1.795 1.689 2.476 sum -2.202 3.498 -24.278 24.628 Atomic orbital electron populations 1.22273 0.93121 1.04290 1.03381 1.21960 0.95273 0.96471 0.85082 0.89095 1.88010 1.86749 1.33066 1.18375 1.20500 0.99836 0.90531 0.83265 1.21727 1.08836 0.96371 0.88608 1.23571 1.02783 0.94112 0.96578 1.75155 1.16335 1.18173 1.03712 1.78323 1.17567 0.90307 1.19569 1.44934 1.45399 1.12513 1.08098 0.70719 1.20192 0.80956 0.85164 0.84232 1.90748 1.36738 1.25520 1.86459 1.46019 1.53715 1.32272 1.05434 1.21618 0.99435 0.95983 0.82821 1.21313 1.00087 0.96040 0.93420 1.22082 1.00800 0.95190 0.98570 1.20888 0.96583 0.93740 0.86931 1.44051 1.66776 1.07027 1.13647 1.19214 1.15695 1.18315 0.84980 0.91722 1.25045 0.96579 1.00802 0.97221 1.70035 1.24231 1.39331 1.21117 0.86242 0.80788 0.77612 0.82250 1.20275 1.21741 1.21520 1.20762 0.95533 0.84481 0.94665 1.22181 1.01256 0.97778 0.96085 0.91203 0.90703 0.90438 0.90820 0.90825 0.78462 0.76525 0.91608 0.91475 0.91259 0.92137 0.93574 0.96641 0.92905 0.93666 0.96437 0.89392 0.93002 0.92358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.90 9.42 37.16 0.35 -0.55 16 2 C 0.07 0.53 3.14 -27.88 -0.09 0.44 16 3 H 0.09 0.40 7.79 -51.93 -0.40 -0.01 16 4 O -0.35 -2.96 8.91 -55.14 -0.49 -3.45 16 5 C 0.14 0.70 6.37 36.01 0.23 0.93 16 6 C -0.02 -0.16 7.28 -82.09 -0.60 -0.76 16 7 C -0.01 -0.14 11.41 -17.73 -0.20 -0.34 16 8 N -0.27 -3.22 12.41 30.24 0.38 -2.84 16 9 N -0.08 -0.79 13.38 60.35 0.81 0.02 16 10 N -0.39 -2.42 6.98 33.54 0.23 -2.18 16 11 H 0.45 0.79 8.96 -190.40 -1.71 -0.92 16 12 C 0.51 5.79 7.23 -10.99 -0.08 5.71 16 13 O -0.52 -8.38 16.50 -14.36 -0.24 -8.62 16 14 N -0.72 -7.36 5.16 -60.29 -0.31 -7.67 16 15 C 0.12 1.60 5.06 -4.04 -0.02 1.58 16 16 C -0.09 -1.29 2.19 -90.58 -0.20 -1.49 16 17 C -0.13 -1.90 5.25 -26.61 -0.14 -2.04 16 18 C 0.15 2.78 6.52 -3.71 -0.02 2.76 16 19 N -0.59 -14.12 2.99 -172.32 -0.52 -14.64 16 20 C -0.25 -6.73 9.58 -15.06 -0.14 -6.87 16 21 H 0.07 1.70 7.88 -52.49 -0.41 1.29 16 22 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 23 N -0.90 -25.61 11.20 55.49 0.62 -24.99 16 24 Si 0.90 21.28 29.59 -169.99 -5.03 16.25 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 27 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 28 C 0.17 3.88 5.30 -3.71 -0.02 3.86 16 29 C -0.13 -2.34 5.36 -26.61 -0.14 -2.48 16 30 H 0.07 0.24 7.87 -51.93 -0.41 -0.17 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.31 7.56 -51.93 -0.39 -0.08 16 33 H 0.07 0.25 8.09 -51.93 -0.42 -0.17 16 34 H 0.07 0.18 7.87 -51.93 -0.41 -0.23 16 35 H 0.20 1.94 7.94 -52.49 -0.42 1.53 16 36 H 0.40 3.06 7.07 -40.82 -0.29 2.77 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.05 0.54 7.15 -51.93 -0.37 0.17 16 42 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.05 1.01 7.93 -51.93 -0.41 0.59 16 44 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 45 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.09 2.27 6.06 -51.93 -0.31 1.95 16 47 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 48 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 391.22 15.07 5.90 5.90 Total: -1.00 -35.36 391.22 -8.71 -44.07 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -8.90 Total: -2.53 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: -1.16 Total: 0.70 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: 1.21 Total: -52.31 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: -0.73 Total: -12.07 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.36 -8.71 -44.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575862566.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.504 kcal (2) G-P(sol) polarization free energy of solvation -35.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds