Wall clock time and date at job start Tue Mar 31 2020 20:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47118 * 2 1 4 4 O 1.42902 * 109.47385 * 240.00158 * 2 1 3 5 5 C 1.42906 * 113.99925 * 89.99585 * 4 2 1 6 6 C 1.50700 * 109.46982 * 180.02562 * 5 4 2 7 7 C 1.35353 * 126.91131 * 359.97438 * 6 5 4 8 8 N 1.33773 * 106.49169 * 179.97438 * 7 6 5 9 9 N 1.28633 * 108.88846 * 0.02562 * 8 7 6 10 10 N 1.28715 * 110.17651 * 359.97438 * 9 8 7 11 11 H 0.97002 * 125.86640 * 179.97438 * 10 9 8 12 12 C 1.50700 * 109.47313 * 120.00372 * 2 1 3 13 13 O 1.21283 * 120.00306 * 119.99981 * 12 2 1 14 14 N 1.34776 * 119.99538 * 299.99927 * 12 2 1 15 15 C 1.46507 * 119.99763 * 179.97438 * 14 12 2 16 16 C 1.52997 * 109.47054 * 180.02562 * 15 14 12 17 17 C 1.53041 * 109.45967 * 295.02854 * 16 15 14 18 18 C 1.53192 * 109.31561 * 178.60330 * 17 16 15 19 19 N 1.46931 * 108.76583 * 54.65452 * 18 17 16 20 20 C 1.36936 * 120.63282 * 126.36546 * 19 18 17 21 21 H 1.07995 * 119.99801 * 331.86447 * 20 19 18 22 22 C 1.38809 * 120.00248 * 151.86282 * 20 19 18 23 23 N 1.31628 * 119.99810 * 343.06377 * 22 20 19 24 24 Si 1.86796 * 120.00164 * 163.06056 * 22 20 19 25 25 H 1.48498 * 109.46801 * 0.02562 * 24 22 20 26 26 H 1.48495 * 109.47009 * 120.00322 * 24 22 20 27 27 H 1.48502 * 109.46944 * 240.00040 * 24 22 20 28 28 C 1.46929 * 118.73404 * 306.38760 * 19 18 17 29 29 C 1.53039 * 109.46129 * 174.97555 * 16 15 14 30 30 H 1.09003 * 109.47045 * 60.00144 * 1 2 3 31 31 H 1.09002 * 109.46497 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46950 * 299.99676 * 1 2 3 33 33 H 1.09005 * 109.46756 * 60.00377 * 5 4 2 34 34 H 1.08991 * 109.47146 * 300.00211 * 5 4 2 35 35 H 1.07997 * 126.75193 * 359.97438 * 7 6 5 36 36 H 0.97000 * 120.00506 * 0.02562 * 14 12 2 37 37 H 1.09000 * 109.47341 * 300.00006 * 15 14 12 38 38 H 1.08996 * 109.47028 * 60.00517 * 15 14 12 39 39 H 1.08993 * 109.46186 * 55.00058 * 16 15 14 40 40 H 1.09005 * 109.49967 * 298.56442 * 17 16 15 41 41 H 1.09003 * 109.50141 * 58.66122 * 17 16 15 42 42 H 1.09007 * 109.59814 * 294.86799 * 18 17 16 43 43 H 1.08999 * 109.70960 * 174.50483 * 18 17 16 44 44 H 0.96991 * 119.99869 * 180.02562 * 23 22 20 45 45 H 1.09002 * 109.58529 * 293.81791 * 28 19 18 46 46 H 1.08998 * 109.69755 * 173.47003 * 28 19 18 47 47 H 1.09003 * 109.49429 * 301.33497 * 29 16 15 48 48 H 1.08998 * 109.49991 * 61.39869 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.2001 0.1830 -2.2941 6 6 2.7003 -0.6283 -3.4614 7 6 2.9421 -1.9599 -3.4818 8 7 3.3698 -2.2494 -4.7158 9 7 3.3920 -1.1687 -5.4130 10 7 2.9980 -0.1721 -4.7000 11 1 2.9272 0.7479 -4.9990 12 6 2.0324 -0.7105 1.2304 13 8 2.7297 -1.6966 1.1191 14 7 1.7068 -0.2500 2.4545 15 6 2.1947 -0.9410 3.6507 16 6 1.6843 -0.2201 4.8999 17 6 2.2941 1.1821 4.9644 18 6 1.7540 1.9134 6.1973 19 7 2.0105 1.0889 7.3861 20 6 2.6704 1.6094 8.4671 21 1 3.3833 2.4091 8.3309 22 6 2.4230 1.1094 9.7382 23 7 1.3441 0.3899 9.9638 24 14 3.6211 1.4574 11.1284 25 1 4.7449 2.2832 10.6181 26 1 2.9210 2.1910 12.2131 27 1 4.1495 0.1750 11.6591 28 6 1.5460 -0.3051 7.3926 29 6 2.0883 -1.0113 6.1461 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.9320 0.9514 -2.0450 34 1 1.2539 0.6547 -2.5588 35 1 2.8147 -2.6524 -2.6629 36 1 1.1488 0.5384 2.5436 37 1 1.8310 -1.9685 3.6505 38 1 3.2847 -0.9414 3.6509 39 1 0.5981 -0.1419 4.8558 40 1 3.3792 1.1041 5.0338 41 1 2.0256 1.7373 4.0656 42 1 0.6812 2.0722 6.0874 43 1 2.2566 2.8747 6.3040 44 1 1.1710 0.0408 10.8520 45 1 0.4563 -0.3271 7.3801 46 1 1.9114 -0.8099 8.2868 47 1 1.6731 -2.0176 6.0885 48 1 3.1752 -1.0690 6.2039 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001575862566.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:14 Heat of formation + Delta-G solvation = 3.347987 kcal Electronic energy + Delta-G solvation = -28663.021166 eV Core-core repulsion = 24561.693884 eV Total energy + Delta-G solvation = -4101.327282 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.34605 -41.07390 -39.51939 -38.67222 -36.35950 -34.64871 -34.51848 -33.51725 -32.57044 -31.69222 -31.23222 -28.40000 -27.68255 -26.04349 -24.75867 -24.09115 -23.74967 -22.85248 -22.55755 -21.39845 -20.64433 -19.55272 -18.70313 -18.12990 -18.04454 -17.40290 -16.87556 -16.74728 -16.33202 -15.95398 -15.82879 -15.60337 -15.27893 -15.20765 -14.97090 -14.75054 -14.66496 -14.00364 -13.82094 -13.77010 -13.58469 -13.29406 -13.15110 -12.99506 -12.84454 -12.76449 -12.57896 -12.38410 -12.22066 -11.98381 -11.93580 -11.81639 -11.67615 -11.58484 -11.22984 -11.12560 -11.07165 -10.61472 -10.50987 -10.08782 -10.04204 -8.64425 -7.86097 -5.30515 0.48224 1.44363 1.45555 1.46847 1.48404 1.57816 1.64010 2.06637 2.52063 2.88642 3.28667 3.49318 3.68889 3.74282 3.79263 3.88455 3.98044 3.99353 4.06978 4.11085 4.14499 4.35999 4.38383 4.48195 4.55429 4.57776 4.73644 4.76170 4.80421 4.83566 4.89806 4.96985 5.05804 5.14297 5.17599 5.30918 5.32398 5.34036 5.41942 5.48916 5.58670 5.68489 5.82026 5.90816 6.03587 6.41844 6.61612 7.17743 7.29142 7.35412 7.90841 8.40625 9.19964 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.033470 B = 0.001700 C = 0.001696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.371129 B =16470.603444 C =16501.306820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.080 3.920 3 H 0.131 0.869 4 O -0.378 6.378 5 C 0.135 3.865 6 C -0.001 4.001 7 C -0.045 4.045 8 N -0.305 5.305 9 N -0.102 5.102 10 N -0.362 5.362 11 H 0.468 0.532 12 C 0.505 3.495 13 O -0.577 6.577 14 N -0.708 5.708 15 C 0.137 3.863 16 C -0.077 4.077 17 C -0.114 4.114 18 C 0.139 3.861 19 N -0.612 5.612 20 C -0.259 4.259 21 H 0.065 0.935 22 C -0.052 4.052 23 N -0.934 5.934 24 Si 0.962 3.038 25 H -0.267 1.267 26 H -0.292 1.292 27 H -0.292 1.292 28 C 0.177 3.823 29 C -0.124 4.124 30 H 0.095 0.905 31 H 0.052 0.948 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.112 0.888 35 H 0.190 0.810 36 H 0.417 0.583 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.080 0.920 40 H 0.048 0.952 41 H 0.091 0.909 42 H 0.021 0.979 43 H 0.051 0.949 44 H 0.249 0.751 45 H 0.000 1.000 46 H 0.048 0.952 47 H 0.066 0.934 48 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.539 5.994 -26.638 27.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.020 3.980 3 H 0.149 0.851 4 O -0.296 6.296 5 C 0.057 3.943 6 C -0.136 4.136 7 C -0.203 4.203 8 N -0.172 5.172 9 N -0.082 5.082 10 N -0.088 5.088 11 H 0.318 0.682 12 C 0.292 3.708 13 O -0.455 6.455 14 N -0.363 5.363 15 C 0.013 3.987 16 C -0.096 4.096 17 C -0.153 4.153 18 C 0.013 3.987 19 N -0.336 5.336 20 C -0.389 4.389 21 H 0.083 0.917 22 C -0.247 4.247 23 N -0.581 5.581 24 Si 0.791 3.209 25 H -0.192 1.192 26 H -0.219 1.219 27 H -0.219 1.219 28 C 0.051 3.949 29 C -0.164 4.164 30 H 0.114 0.886 31 H 0.071 0.929 32 H 0.111 0.889 33 H 0.119 0.881 34 H 0.130 0.870 35 H 0.207 0.793 36 H 0.254 0.746 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.099 0.901 40 H 0.067 0.933 41 H 0.109 0.891 42 H 0.039 0.961 43 H 0.070 0.930 44 H 0.058 0.942 45 H 0.018 0.982 46 H 0.067 0.933 47 H 0.085 0.915 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.524 4.454 -27.949 28.414 hybrid contribution -0.100 1.028 2.283 2.506 sum -2.625 5.482 -25.665 26.375 Atomic orbital electron populations 1.22294 0.91423 1.03533 1.05450 1.22027 0.96252 0.97176 0.82586 0.85135 1.87980 1.87167 1.34952 1.19502 1.20856 1.02388 0.89812 0.81273 1.22044 1.06621 0.95547 0.89372 1.23646 1.04649 0.95792 0.96205 1.75092 1.17798 1.19539 1.04776 1.78223 1.18982 0.90829 1.20193 1.44875 1.43586 1.12955 1.07395 0.68200 1.21086 0.79742 0.84498 0.85497 1.90731 1.39359 1.28154 1.87276 1.45838 1.53474 1.32455 1.04507 1.21236 0.98563 0.95710 0.83170 1.21137 1.00667 0.95319 0.92432 1.21938 0.99800 0.95317 0.98210 1.21103 0.97063 0.93705 0.86780 1.44338 1.66841 1.08024 1.14419 1.19532 1.15533 1.17827 0.86042 0.91730 1.25749 0.98067 1.01423 0.99456 1.70176 1.25887 1.40836 1.21193 0.85286 0.79069 0.77148 0.79440 1.19155 1.21943 1.21940 1.20553 0.94349 0.84506 0.95456 1.21986 1.00369 0.98563 0.95437 0.88616 0.92905 0.88896 0.88115 0.87025 0.79304 0.74555 0.92310 0.92780 0.90128 0.93314 0.89068 0.96149 0.93025 0.94219 0.98227 0.93339 0.91502 0.93362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.04 9.42 71.98 0.68 -0.36 16 2 C 0.08 0.83 3.14 29.85 0.09 0.92 16 3 H 0.13 0.33 7.79 -2.39 -0.02 0.31 16 4 O -0.38 -5.40 8.91 -129.94 -1.16 -6.56 16 5 C 0.13 0.79 6.37 71.24 0.45 1.24 16 6 C 0.00 -0.01 7.28 41.36 0.30 0.29 16 7 C -0.05 -0.93 11.41 83.73 0.96 0.02 16 8 N -0.31 -7.54 12.41 -58.25 -0.72 -8.26 16 9 N -0.10 -2.04 13.38 37.02 0.50 -1.54 16 10 N -0.36 -3.75 6.98 -47.79 -0.33 -4.08 16 11 H 0.47 0.17 8.96 -219.96 -1.97 -1.80 16 12 C 0.51 10.22 7.23 87.66 0.63 10.85 16 13 O -0.58 -18.27 16.50 16.00 0.26 -18.01 16 14 N -0.71 -12.17 5.16 -463.05 -2.39 -14.56 16 15 C 0.14 3.25 5.06 86.38 0.44 3.68 16 16 C -0.08 -2.03 2.19 -10.77 -0.02 -2.06 16 17 C -0.11 -3.08 5.25 30.67 0.16 -2.91 16 18 C 0.14 5.09 6.52 86.36 0.56 5.65 16 19 N -0.61 -29.30 2.99 -699.09 -2.09 -31.39 16 20 C -0.26 -13.91 9.58 84.03 0.81 -13.11 16 21 H 0.07 3.39 7.88 -2.91 -0.02 3.37 16 22 C -0.05 -2.85 4.92 84.86 0.42 -2.43 16 23 N -0.93 -54.60 11.20 21.65 0.24 -54.36 16 24 Si 0.96 44.45 29.59 68.60 2.03 46.48 16 25 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 26 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 27 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 28 C 0.18 8.18 5.30 86.36 0.46 8.63 16 29 C -0.12 -4.31 5.36 30.67 0.16 -4.14 16 30 H 0.10 0.13 7.87 -2.39 -0.02 0.11 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.09 0.29 7.56 -2.39 -0.02 0.27 16 33 H 0.10 0.12 8.09 -2.38 -0.02 0.10 16 34 H 0.11 -0.13 7.87 -2.39 -0.02 -0.14 16 35 H 0.19 3.99 7.94 -2.91 -0.02 3.97 16 36 H 0.42 4.36 7.07 -92.71 -0.66 3.70 16 37 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 41 H 0.09 1.68 7.15 -2.39 -0.02 1.66 16 42 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 43 H 0.05 1.88 7.93 -2.39 -0.02 1.86 16 44 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 45 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 46 H 0.05 2.61 6.06 -2.39 -0.01 2.59 16 47 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 48 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -82.68 391.22 0.79 -81.89 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -1.64 Total: 4.11 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: 6.10 Total: 6.28 kcal Atomic # 7 Polarization: -109.39 SS G_CDS: -4.80 Total: -114.19 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.89 Total: -24.57 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -82.68 0.79 -81.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575862566.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.241 kcal (2) G-P(sol) polarization free energy of solvation -82.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds