Wall clock time and date at job start Tue Mar 31 2020 20:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46495 * 109.47374 * 2 1 4 4 C 1.36742 * 127.13855 * 274.86966 * 3 2 1 5 5 C 1.50702 * 126.34235 * 359.97058 * 4 3 2 6 6 H 1.09000 * 110.21434 * 344.57766 * 5 4 3 7 7 C 1.54479 * 110.24521 * 106.51320 * 5 4 3 8 8 C 1.54765 * 101.70052 * 144.35892 * 7 5 4 9 9 C 1.51282 * 104.23804 * 335.30162 * 8 7 5 10 10 O 1.21280 * 124.94239 * 196.17357 * 9 8 7 11 11 N 1.34421 * 110.11359 * 16.19257 * 9 8 7 12 12 N 1.30291 * 107.30586 * 180.22937 * 4 3 2 13 13 N 1.28532 * 110.05529 * 359.77138 * 12 4 3 14 14 C 1.31214 * 109.85909 * 0.02562 * 13 12 4 15 15 N 1.38585 * 126.47440 * 179.97438 * 14 13 12 16 16 C 1.46906 * 110.99545 * 61.37928 * 15 14 13 17 17 C 1.50703 * 109.46861 * 160.70817 * 16 15 14 18 18 H 1.07997 * 119.99822 * 359.97438 * 17 16 15 19 19 C 1.37870 * 120.00094 * 180.02562 * 17 16 15 20 20 N 1.31521 * 119.99831 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00199 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46935 * 59.99679 * 21 19 17 23 23 H 1.48502 * 109.46881 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46834 * 299.99612 * 21 19 17 25 25 C 1.46892 * 111.00127 * 297.42945 * 15 14 13 26 26 C 1.53001 * 109.46985 * 287.50570 * 25 15 14 27 27 O 1.42901 * 109.47106 * 62.60001 * 26 25 15 28 28 C 1.42900 * 113.99751 * 180.02562 * 27 26 25 29 29 H 1.09000 * 109.47299 * 305.01342 * 1 2 3 30 30 H 1.09000 * 109.47203 * 65.01094 * 1 2 3 31 31 H 1.08998 * 109.47317 * 185.00998 * 1 2 3 32 32 H 1.08998 * 109.47487 * 239.99706 * 2 1 3 33 33 H 1.09003 * 109.47054 * 120.00203 * 2 1 3 34 34 H 1.08997 * 110.96978 * 262.53019 * 7 5 4 35 35 H 1.08997 * 110.97138 * 26.29286 * 7 5 4 36 36 H 1.09005 * 110.51762 * 216.58176 * 8 7 5 37 37 H 1.08994 * 110.52646 * 94.02466 * 8 7 5 38 38 H 0.97002 * 124.35002 * 180.38823 * 11 9 8 39 39 H 1.09003 * 109.47119 * 280.70768 * 16 15 14 40 40 H 1.08997 * 109.47257 * 40.71078 * 16 15 14 41 41 H 0.97008 * 119.99926 * 180.02562 * 20 19 17 42 42 H 1.08996 * 109.47259 * 167.50297 * 25 15 14 43 43 H 1.09008 * 109.47395 * 47.50423 * 25 15 14 44 44 H 1.08997 * 109.47319 * 302.59841 * 26 25 15 45 45 H 1.09001 * 109.46938 * 182.59496 * 26 25 15 46 46 H 1.08995 * 109.47637 * 59.99472 * 28 27 26 47 47 H 1.09004 * 109.46838 * 179.97438 * 28 27 26 48 48 H 1.09004 * 109.47133 * 299.99366 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2063 2.1903 -1.0861 5 6 1.9484 1.8270 -2.5258 6 1 1.8471 0.7467 -2.6293 7 6 0.6735 2.5349 -3.0356 8 6 1.0517 2.8430 -4.5044 9 6 2.5638 2.8891 -4.4975 10 8 3.2481 3.3703 -5.3756 11 7 3.0385 2.3187 -3.3767 12 7 2.6550 3.3317 -0.6461 13 7 2.7579 3.3006 0.6347 14 6 2.3778 2.1279 1.0841 15 7 2.3511 1.7225 2.4090 16 6 1.4390 2.5614 3.1979 17 6 1.0655 1.8408 4.4677 18 1 1.4654 0.8579 4.6684 19 6 0.2125 2.4360 5.3727 20 7 -0.2748 3.6328 5.1281 21 14 -0.2498 1.5432 6.9471 22 1 0.9764 1.2669 7.7378 23 1 -1.1720 2.3912 7.7445 24 1 -0.9210 0.2619 6.6106 25 6 3.7013 1.7248 2.9876 26 6 4.5041 0.5556 2.4135 27 8 4.6457 0.7229 1.0014 28 6 5.3836 -0.3215 0.3635 29 1 -0.3634 0.5896 0.8417 30 1 -0.3633 0.4341 -0.9315 31 1 -0.3634 -1.0237 0.0897 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 -0.1887 1.8701 -2.9846 35 1 0.4889 3.4541 -2.4796 36 1 0.6420 3.8057 -4.8105 37 1 0.6972 2.0514 -5.1644 38 1 3.9805 2.2417 -3.1585 39 1 1.9322 3.5015 3.4452 40 1 0.5391 2.7649 2.6176 41 1 -0.8747 4.0518 5.7650 42 1 3.6328 1.6215 4.0705 43 1 4.1999 2.6628 2.7429 44 1 3.9819 -0.3790 2.6181 45 1 5.4904 0.5298 2.8769 46 1 4.8793 -1.2741 0.5257 47 1 5.4459 -0.1212 -0.7061 48 1 6.3881 -0.3660 0.7844 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647715727.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:51 Heat of formation + Delta-G solvation = 12.319086 kcal Electronic energy + Delta-G solvation = -31255.217476 eV Core-core repulsion = 27154.279210 eV Total energy + Delta-G solvation = -4100.938266 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.52913 -40.24278 -38.09982 -36.76227 -36.21195 -35.30959 -32.73183 -31.46754 -30.55063 -30.28081 -29.47167 -27.34400 -26.45142 -25.81029 -23.84677 -22.85439 -22.53092 -22.31637 -20.68519 -20.26610 -19.76892 -17.44327 -17.10569 -16.79096 -16.50054 -16.05188 -15.77533 -15.59193 -15.36509 -15.02932 -14.69051 -14.55694 -14.30145 -13.86434 -13.77012 -13.57379 -13.34255 -12.98055 -12.83360 -12.76745 -12.39757 -12.24342 -12.01429 -11.84122 -11.69773 -11.42253 -11.19690 -11.10036 -11.06552 -10.97568 -10.85022 -10.58838 -10.17155 -10.09783 -10.00720 -9.71157 -9.58706 -9.46319 -9.35941 -8.57570 -8.38284 -7.87204 -6.14360 -4.19252 2.13646 2.44254 2.68207 3.21912 3.24363 3.30095 3.31098 3.44021 3.94747 4.07037 4.23032 4.26562 4.43557 4.51872 4.63974 4.72897 4.81122 5.05895 5.10071 5.16487 5.20690 5.25222 5.28076 5.43812 5.45798 5.50427 5.53797 5.56935 5.59446 5.63841 5.72630 5.79507 5.88839 6.11351 6.20363 6.26357 6.37316 6.51474 6.62999 6.85195 6.92101 7.15818 7.25828 7.28988 7.64339 7.80342 7.98152 8.12522 8.34427 8.86396 9.28682 9.45420 10.95597 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014264 B = 0.003597 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.497591 B = 7782.051965 C = 8638.991720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.115 3.885 3 N -0.449 5.449 4 C 0.129 3.871 5 C 0.234 3.766 6 H 0.094 0.906 7 C -0.123 4.123 8 C -0.154 4.154 9 C 0.526 3.474 10 O -0.537 6.537 11 N -0.710 5.710 12 N -0.268 5.268 13 N -0.322 5.322 14 C 0.410 3.590 15 N -0.468 5.468 16 C 0.211 3.789 17 C -0.517 4.517 18 H 0.065 0.935 19 C 0.061 3.939 20 N -0.891 5.891 21 Si 0.901 3.099 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.276 1.276 25 C 0.072 3.928 26 C 0.061 3.939 27 O -0.383 6.383 28 C 0.035 3.965 29 H 0.074 0.926 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.413 0.587 39 H 0.013 0.987 40 H 0.028 0.972 41 H 0.265 0.735 42 H 0.111 0.889 43 H 0.052 0.948 44 H 0.055 0.945 45 H 0.050 0.950 46 H 0.036 0.964 47 H 0.075 0.925 48 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.196 -11.649 -13.218 17.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.009 4.009 3 N -0.142 5.142 4 C -0.139 4.139 5 C 0.126 3.874 6 H 0.111 0.889 7 C -0.162 4.162 8 C -0.194 4.194 9 C 0.312 3.688 10 O -0.413 6.413 11 N -0.366 5.366 12 N -0.110 5.110 13 N -0.166 5.166 14 C 0.054 3.946 15 N -0.195 5.195 16 C 0.087 3.913 17 C -0.556 4.556 18 H 0.083 0.917 19 C -0.142 4.142 20 N -0.529 5.529 21 Si 0.728 3.272 22 H -0.201 1.201 23 H -0.213 1.213 24 H -0.202 1.202 25 C -0.055 4.055 26 C -0.016 4.016 27 O -0.301 6.301 28 C -0.062 4.062 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.119 0.881 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.252 0.748 39 H 0.031 0.969 40 H 0.047 0.953 41 H 0.074 0.926 42 H 0.129 0.871 43 H 0.070 0.930 44 H 0.073 0.927 45 H 0.068 0.932 46 H 0.054 0.946 47 H 0.094 0.906 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 3.558 -10.160 -13.695 17.420 hybrid contribution 0.007 -1.437 1.395 2.003 sum 3.565 -11.597 -12.300 17.277 Atomic orbital electron populations 1.22163 0.94008 1.03267 1.03279 1.21679 0.95494 0.79582 1.04098 1.46116 1.49033 1.12970 1.06101 1.24184 1.08725 0.90219 0.90750 1.19571 0.87790 0.98359 0.81729 0.88872 1.22758 0.95952 1.02653 0.94855 1.22388 0.93581 1.05504 0.97966 1.20783 0.91084 0.75942 0.80993 1.90756 1.65066 1.45969 1.39533 1.46107 1.09335 1.60343 1.20787 1.73897 1.15446 1.17645 1.04038 1.74678 1.21918 1.17471 1.02538 1.22516 0.96428 0.86537 0.89161 1.59091 1.10349 1.54949 0.95112 1.19797 0.89403 0.90623 0.91467 1.21002 1.28586 1.03268 1.02695 0.91660 1.24972 0.95886 0.94905 0.98460 1.69966 1.32096 1.14319 1.36522 0.86527 0.78424 0.79434 0.82804 1.20139 1.21274 1.20185 1.22196 0.86519 0.96687 1.00120 1.22771 0.98365 0.99451 0.80963 1.87990 1.74809 1.46368 1.20951 1.22624 0.94971 0.90718 0.97861 0.90652 0.92493 0.90704 0.90208 0.88055 0.88654 0.88743 0.87600 0.87629 0.74784 0.96932 0.95342 0.92575 0.87137 0.93004 0.92714 0.93217 0.94557 0.90607 0.94492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.81 10.24 37.16 0.38 -1.43 16 2 C 0.11 1.32 6.63 -4.05 -0.03 1.29 16 3 N -0.45 -6.89 2.47 -114.09 -0.28 -7.17 16 4 C 0.13 1.93 6.87 -154.01 -1.06 0.88 16 5 C 0.23 2.43 3.90 -68.16 -0.27 2.16 16 6 H 0.09 0.71 7.13 -51.93 -0.37 0.34 16 7 C -0.12 -1.09 6.69 -25.03 -0.17 -1.26 16 8 C -0.15 -1.30 6.86 -26.67 -0.18 -1.48 16 9 C 0.53 6.51 8.43 -10.86 -0.09 6.42 16 10 O -0.54 -8.80 18.03 5.56 0.10 -8.70 16 11 N -0.71 -8.11 5.86 -53.88 -0.32 -8.42 16 12 N -0.27 -5.18 12.17 32.99 0.40 -4.78 16 13 N -0.32 -7.00 11.99 30.32 0.36 -6.64 16 14 C 0.41 7.98 4.37 -318.87 -1.39 6.59 16 15 N -0.47 -9.48 4.39 -175.88 -0.77 -10.25 16 16 C 0.21 5.24 4.67 -4.97 -0.02 5.22 16 17 C -0.52 -13.32 8.50 -34.44 -0.29 -13.62 16 18 H 0.07 1.62 7.81 -52.49 -0.41 1.21 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -25.43 13.29 55.43 0.74 -24.70 16 21 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 24 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 25 C 0.07 1.31 5.35 -3.83 -0.02 1.29 16 26 C 0.06 0.89 6.27 37.16 0.23 1.12 16 27 O -0.38 -5.68 8.46 -35.23 -0.30 -5.98 16 28 C 0.04 0.38 11.01 101.05 1.11 1.49 16 29 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.66 7.33 -51.93 -0.38 0.28 16 33 H 0.10 1.27 8.12 -51.93 -0.42 0.84 16 34 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.09 1.06 7.90 -51.93 -0.41 0.65 16 36 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.41 4.79 8.96 -40.82 -0.37 4.42 16 39 H 0.01 0.35 8.01 -51.93 -0.42 -0.06 16 40 H 0.03 0.79 7.92 -51.93 -0.41 0.37 16 41 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 42 H 0.11 2.02 7.32 -51.93 -0.38 1.64 16 43 H 0.05 1.02 7.85 -51.92 -0.41 0.61 16 44 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 47 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 398.97 15.07 6.01 6.01 Total: -1.00 -34.33 398.97 -8.73 -43.05 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -7.76 Total: 2.13 kcal Atomic # 6 Polarization: 12.07 SS G_CDS: -1.89 Total: 10.18 kcal Atomic # 7 Polarization: -62.09 SS G_CDS: 0.13 Total: -61.95 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.20 Total: -14.68 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.33 -8.73 -43.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647715727.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.374 kcal (2) G-P(sol) polarization free energy of solvation -34.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds