Wall clock time and date at job start Tue Mar 31 2020 20:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46495 * 109.47374 * 2 1 4 4 C 1.36742 * 127.13855 * 274.86966 * 3 2 1 5 5 C 1.50702 * 126.34235 * 359.97058 * 4 3 2 6 6 H 1.09000 * 110.21434 * 344.57766 * 5 4 3 7 7 C 1.54479 * 110.24521 * 106.51320 * 5 4 3 8 8 C 1.54765 * 101.70052 * 144.35892 * 7 5 4 9 9 C 1.51282 * 104.23804 * 335.30162 * 8 7 5 10 10 O 1.21280 * 124.94239 * 196.17357 * 9 8 7 11 11 N 1.34421 * 110.11359 * 16.19257 * 9 8 7 12 12 N 1.30291 * 107.30586 * 180.22937 * 4 3 2 13 13 N 1.28532 * 110.05529 * 359.77138 * 12 4 3 14 14 C 1.31214 * 109.85909 * 0.02562 * 13 12 4 15 15 N 1.38585 * 126.47440 * 179.97438 * 14 13 12 16 16 C 1.46906 * 110.99545 * 61.37928 * 15 14 13 17 17 C 1.50703 * 109.46861 * 160.70817 * 16 15 14 18 18 H 1.07997 * 119.99822 * 359.97438 * 17 16 15 19 19 C 1.37870 * 120.00094 * 180.02562 * 17 16 15 20 20 N 1.31521 * 119.99831 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00199 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46935 * 59.99679 * 21 19 17 23 23 H 1.48502 * 109.46881 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46834 * 299.99612 * 21 19 17 25 25 C 1.46892 * 111.00127 * 297.42945 * 15 14 13 26 26 C 1.53001 * 109.46985 * 287.50570 * 25 15 14 27 27 O 1.42901 * 109.47106 * 62.60001 * 26 25 15 28 28 C 1.42900 * 113.99751 * 180.02562 * 27 26 25 29 29 H 1.09000 * 109.47299 * 305.01342 * 1 2 3 30 30 H 1.09000 * 109.47203 * 65.01094 * 1 2 3 31 31 H 1.08998 * 109.47317 * 185.00998 * 1 2 3 32 32 H 1.08998 * 109.47487 * 239.99706 * 2 1 3 33 33 H 1.09003 * 109.47054 * 120.00203 * 2 1 3 34 34 H 1.08997 * 110.96978 * 262.53019 * 7 5 4 35 35 H 1.08997 * 110.97138 * 26.29286 * 7 5 4 36 36 H 1.09005 * 110.51762 * 216.58176 * 8 7 5 37 37 H 1.08994 * 110.52646 * 94.02466 * 8 7 5 38 38 H 0.97002 * 124.35002 * 180.38823 * 11 9 8 39 39 H 1.09003 * 109.47119 * 280.70768 * 16 15 14 40 40 H 1.08997 * 109.47257 * 40.71078 * 16 15 14 41 41 H 0.97008 * 119.99926 * 180.02562 * 20 19 17 42 42 H 1.08996 * 109.47259 * 167.50297 * 25 15 14 43 43 H 1.09008 * 109.47395 * 47.50423 * 25 15 14 44 44 H 1.08997 * 109.47319 * 302.59841 * 26 25 15 45 45 H 1.09001 * 109.46938 * 182.59496 * 26 25 15 46 46 H 1.08995 * 109.47637 * 59.99472 * 28 27 26 47 47 H 1.09004 * 109.46838 * 179.97438 * 28 27 26 48 48 H 1.09004 * 109.47133 * 299.99366 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2063 2.1903 -1.0861 5 6 1.9484 1.8270 -2.5258 6 1 1.8471 0.7467 -2.6293 7 6 0.6735 2.5349 -3.0356 8 6 1.0517 2.8430 -4.5044 9 6 2.5638 2.8891 -4.4975 10 8 3.2481 3.3703 -5.3756 11 7 3.0385 2.3187 -3.3767 12 7 2.6550 3.3317 -0.6461 13 7 2.7579 3.3006 0.6347 14 6 2.3778 2.1279 1.0841 15 7 2.3511 1.7225 2.4090 16 6 1.4390 2.5614 3.1979 17 6 1.0655 1.8408 4.4677 18 1 1.4654 0.8579 4.6684 19 6 0.2125 2.4360 5.3727 20 7 -0.2748 3.6328 5.1281 21 14 -0.2498 1.5432 6.9471 22 1 0.9764 1.2669 7.7378 23 1 -1.1720 2.3912 7.7445 24 1 -0.9210 0.2619 6.6106 25 6 3.7013 1.7248 2.9876 26 6 4.5041 0.5556 2.4135 27 8 4.6457 0.7229 1.0014 28 6 5.3836 -0.3215 0.3635 29 1 -0.3634 0.5896 0.8417 30 1 -0.3633 0.4341 -0.9315 31 1 -0.3634 -1.0237 0.0897 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 -0.1887 1.8701 -2.9846 35 1 0.4889 3.4541 -2.4796 36 1 0.6420 3.8057 -4.8105 37 1 0.6972 2.0514 -5.1644 38 1 3.9805 2.2417 -3.1585 39 1 1.9322 3.5015 3.4452 40 1 0.5391 2.7649 2.6176 41 1 -0.8747 4.0518 5.7650 42 1 3.6328 1.6215 4.0705 43 1 4.1999 2.6628 2.7429 44 1 3.9819 -0.3790 2.6181 45 1 5.4904 0.5298 2.8769 46 1 4.8793 -1.2741 0.5257 47 1 5.4459 -0.1212 -0.7061 48 1 6.3881 -0.3660 0.7844 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647715727.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:50 Heat of formation + Delta-G solvation = -13.308040 kcal Electronic energy + Delta-G solvation = -31256.328752 eV Core-core repulsion = 27154.279210 eV Total energy + Delta-G solvation = -4102.049541 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.87519 -41.18700 -39.36254 -37.93294 -37.51357 -36.45708 -34.74149 -32.25459 -31.76084 -31.39657 -30.94946 -28.81011 -27.66020 -27.02963 -24.91177 -24.39583 -23.95116 -23.44392 -21.61308 -21.35877 -21.14939 -18.78252 -18.42897 -17.95901 -17.74470 -17.43463 -17.03369 -16.77199 -16.54918 -16.38801 -16.10831 -15.71030 -15.35442 -15.17794 -14.81730 -14.67881 -14.45766 -14.11936 -14.01283 -13.89316 -13.63686 -13.44533 -13.14324 -12.92413 -12.87169 -12.82993 -12.64818 -12.37611 -12.29403 -12.24137 -12.12880 -11.97746 -11.96392 -11.61751 -11.32705 -11.00494 -10.90782 -10.63210 -10.59682 -10.34974 -9.79580 -9.59411 -8.20892 -6.34356 0.86752 1.33067 1.45598 1.48225 1.56315 1.61779 1.90512 2.39522 2.43399 2.90882 2.95766 3.12225 3.15477 3.40728 3.64039 3.80869 3.87206 4.01529 4.04907 4.17653 4.20484 4.30066 4.35806 4.48528 4.52747 4.54268 4.56708 4.69309 4.74274 4.79286 4.84993 4.85520 4.87389 4.91921 4.97990 5.04814 5.15030 5.16556 5.29955 5.33522 5.60940 5.71631 5.83680 5.93800 5.97467 6.05476 6.27972 6.63117 6.79556 7.17317 7.36075 7.89205 8.90262 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014264 B = 0.003597 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.497591 B = 7782.051965 C = 8638.991720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.105 3.895 3 N -0.440 5.440 4 C 0.158 3.842 5 C 0.233 3.767 6 H 0.142 0.858 7 C -0.119 4.119 8 C -0.140 4.140 9 C 0.517 3.483 10 O -0.585 6.585 11 N -0.710 5.710 12 N -0.316 5.316 13 N -0.372 5.372 14 C 0.392 3.608 15 N -0.455 5.455 16 C 0.235 3.765 17 C -0.521 4.521 18 H 0.078 0.922 19 C 0.005 3.995 20 N -0.935 5.935 21 Si 0.975 3.025 22 H -0.264 1.264 23 H -0.290 1.290 24 H -0.262 1.262 25 C 0.070 3.930 26 C 0.075 3.925 27 O -0.409 6.409 28 C 0.032 3.968 29 H 0.026 0.974 30 H 0.079 0.921 31 H 0.104 0.896 32 H 0.128 0.872 33 H 0.092 0.908 34 H 0.136 0.864 35 H 0.064 0.936 36 H 0.109 0.891 37 H 0.144 0.856 38 H 0.409 0.591 39 H -0.032 1.032 40 H -0.010 1.010 41 H 0.265 0.735 42 H 0.103 0.897 43 H 0.024 0.976 44 H 0.069 0.931 45 H 0.072 0.928 46 H 0.056 0.944 47 H 0.083 0.917 48 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.484 -15.814 -14.446 21.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.016 4.016 3 N -0.131 5.131 4 C -0.111 4.111 5 C 0.125 3.875 6 H 0.159 0.841 7 C -0.157 4.157 8 C -0.180 4.180 9 C 0.305 3.695 10 O -0.466 6.466 11 N -0.364 5.364 12 N -0.156 5.156 13 N -0.216 5.216 14 C 0.034 3.966 15 N -0.181 5.181 16 C 0.109 3.891 17 C -0.559 4.559 18 H 0.097 0.903 19 C -0.194 4.194 20 N -0.575 5.575 21 Si 0.799 3.201 22 H -0.188 1.188 23 H -0.216 1.216 24 H -0.187 1.187 25 C -0.057 4.057 26 C -0.002 4.002 27 O -0.329 6.329 28 C -0.064 4.064 29 H 0.045 0.955 30 H 0.098 0.902 31 H 0.123 0.877 32 H 0.146 0.854 33 H 0.110 0.890 34 H 0.154 0.846 35 H 0.083 0.917 36 H 0.127 0.873 37 H 0.162 0.838 38 H 0.247 0.753 39 H -0.014 1.014 40 H 0.008 0.992 41 H 0.074 0.926 42 H 0.122 0.878 43 H 0.042 0.958 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.074 0.926 47 H 0.102 0.898 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.859 -14.373 -14.927 20.918 hybrid contribution 0.268 -0.131 1.665 1.692 sum 3.127 -14.503 -13.262 19.900 Atomic orbital electron populations 1.22146 0.93269 1.04395 1.02335 1.22117 0.96071 0.77376 1.06036 1.46279 1.48012 1.14165 1.04692 1.25089 1.04948 0.88617 0.92482 1.20115 0.88011 1.01045 0.78294 0.84104 1.22817 0.96417 1.02115 0.94390 1.22420 0.90126 1.07182 0.98274 1.21500 0.92800 0.74801 0.80353 1.90730 1.66555 1.47969 1.41298 1.46216 1.09563 1.59911 1.20661 1.73790 1.18342 1.20288 1.03194 1.74537 1.23561 1.19372 1.04128 1.22365 0.97831 0.87080 0.89372 1.59038 1.10634 1.52972 0.95465 1.19266 0.88469 0.89639 0.91677 1.21307 1.28242 1.03596 1.02762 0.90347 1.25969 0.95689 0.95519 1.02228 1.70138 1.33055 1.16339 1.37985 0.85349 0.78377 0.78300 0.78067 1.18819 1.21561 1.18692 1.22234 0.85873 0.97544 1.00074 1.22575 0.98740 0.97555 0.81319 1.87959 1.75714 1.48351 1.20844 1.22809 0.95223 0.90431 0.97966 0.95510 0.90236 0.87745 0.85379 0.89002 0.84616 0.91718 0.87261 0.83833 0.75258 1.01437 0.99183 0.92642 0.87841 0.95756 0.91326 0.91003 0.92580 0.89806 0.93600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.02 10.24 71.98 0.74 -2.29 16 2 C 0.11 2.07 6.63 86.38 0.57 2.65 16 3 N -0.44 -13.05 2.47 -514.86 -1.27 -14.32 16 4 C 0.16 4.58 6.87 137.64 0.95 5.53 16 5 C 0.23 4.06 3.90 44.70 0.17 4.24 16 6 H 0.14 1.25 7.13 -2.39 -0.02 1.23 16 7 C -0.12 -1.69 6.69 31.70 0.21 -1.48 16 8 C -0.14 -1.90 6.86 30.63 0.21 -1.69 16 9 C 0.52 11.99 8.43 87.90 0.74 12.73 16 10 O -0.59 -19.07 18.03 -3.03 -0.05 -19.13 16 11 N -0.71 -14.90 5.86 -442.96 -2.59 -17.50 16 12 N -0.32 -12.62 12.17 -49.54 -0.60 -13.22 16 13 N -0.37 -17.21 11.99 -58.00 -0.70 -17.90 16 14 C 0.39 15.84 4.37 260.11 1.14 16.98 16 15 N -0.46 -19.29 4.39 -710.35 -3.12 -22.41 16 16 C 0.23 12.53 4.67 85.56 0.40 12.93 16 17 C -0.52 -27.68 8.50 25.60 0.22 -27.46 16 18 H 0.08 3.88 7.81 -2.91 -0.02 3.86 16 19 C 0.00 0.25 5.46 84.65 0.46 0.71 16 20 N -0.94 -55.73 13.29 21.45 0.28 -55.44 16 21 Si 0.98 41.73 29.54 68.60 2.03 43.75 16 22 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 23 H -0.29 -12.45 7.11 99.48 0.71 -11.75 16 24 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 25 C 0.07 2.66 5.35 86.31 0.46 3.12 16 26 C 0.07 2.09 6.27 71.98 0.45 2.54 16 27 O -0.41 -11.66 8.46 -148.98 -1.26 -12.92 16 28 C 0.03 0.59 11.01 113.37 1.25 1.84 16 29 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.13 1.33 7.33 -2.39 -0.02 1.32 16 33 H 0.09 2.05 8.12 -2.39 -0.02 2.03 16 34 H 0.14 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.06 1.36 7.90 -2.39 -0.02 1.35 16 36 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 37 H 0.14 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.41 9.09 8.96 -92.71 -0.83 8.26 16 39 H -0.03 -1.97 8.01 -2.39 -0.02 -1.99 16 40 H -0.01 -0.60 7.92 -2.39 -0.02 -0.62 16 41 H 0.26 14.91 8.31 -92.70 -0.77 14.14 16 42 H 0.10 3.96 7.32 -2.39 -0.02 3.94 16 43 H 0.02 1.03 7.85 -2.38 -0.02 1.01 16 44 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 48 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -83.92 398.97 0.82 -83.10 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 0.14 Total: 15.62 kcal Atomic # 6 Polarization: 22.38 SS G_CDS: 7.97 Total: 30.35 kcal Atomic # 7 Polarization: -132.79 SS G_CDS: -8.00 Total: -140.79 kcal Atomic # 8 Polarization: -30.73 SS G_CDS: -1.31 Total: -32.04 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.75 kcal Total: -83.92 0.82 -83.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647715727.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.795 kcal (2) G-P(sol) polarization free energy of solvation -83.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds