Wall clock time and date at job start Tue Mar 31 2020 20:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46504 * 109.46970 * 2 1 4 4 C 1.36738 * 127.13316 * 85.17201 * 3 2 1 5 5 C 1.50708 * 126.34620 * 359.97438 * 4 3 2 6 6 H 1.09001 * 110.21490 * 14.23374 * 5 4 3 7 7 C 1.54479 * 110.31687 * 252.25815 * 5 4 3 8 8 C 1.54776 * 101.69216 * 215.35460 * 7 5 4 9 9 C 1.51277 * 104.12327 * 25.09975 * 8 7 5 10 10 O 1.21283 * 124.94159 * 163.67543 * 9 8 7 11 11 N 1.34420 * 110.11397 * 343.41274 * 9 8 7 12 12 N 1.30293 * 107.30721 * 179.73313 * 4 3 2 13 13 N 1.28526 * 110.04963 * 0.26304 * 12 4 3 14 14 C 1.31219 * 109.86677 * 0.02562 * 13 12 4 15 15 N 1.38579 * 126.47698 * 180.02562 * 14 13 12 16 16 C 1.46899 * 111.00426 * 58.88026 * 15 14 13 17 17 C 1.50701 * 109.47060 * 75.29790 * 16 15 14 18 18 H 1.08007 * 119.99830 * 5.14025 * 17 16 15 19 19 C 1.37879 * 120.00202 * 185.13392 * 17 16 15 20 20 N 1.31510 * 120.00321 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99759 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.47230 * 89.99975 * 21 19 17 23 23 H 1.48500 * 109.47051 * 210.00173 * 21 19 17 24 24 H 1.48506 * 109.47048 * 329.99766 * 21 19 17 25 25 C 1.46897 * 110.99735 * 294.92513 * 15 14 13 26 26 C 1.53004 * 109.47169 * 190.00380 * 25 15 14 27 27 O 1.42893 * 109.47228 * 64.99780 * 26 25 15 28 28 C 1.42904 * 114.00151 * 180.02562 * 27 26 25 29 29 H 1.09000 * 109.46742 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47006 * 299.99379 * 1 2 3 31 31 H 1.09000 * 109.46862 * 59.99498 * 1 2 3 32 32 H 1.09008 * 109.46943 * 240.00868 * 2 1 3 33 33 H 1.08993 * 109.47252 * 120.00462 * 2 1 3 34 34 H 1.09007 * 110.96823 * 333.66654 * 7 5 4 35 35 H 1.08999 * 110.97220 * 97.38444 * 7 5 4 36 36 H 1.09006 * 110.61501 * 266.39904 * 8 7 5 37 37 H 1.09001 * 110.43286 * 143.70662 * 8 7 5 38 38 H 0.96999 * 124.35003 * 179.84273 * 11 9 8 39 39 H 1.08990 * 109.47507 * 195.30170 * 16 15 14 40 40 H 1.09001 * 109.46630 * 315.30655 * 16 15 14 41 41 H 0.96992 * 120.00405 * 179.97438 * 20 19 17 42 42 H 1.08998 * 109.47373 * 310.00102 * 25 15 14 43 43 H 1.08998 * 109.47375 * 70.00216 * 25 15 14 44 44 H 1.09001 * 109.47460 * 185.00350 * 26 25 15 45 45 H 1.09004 * 109.46828 * 304.99823 * 26 25 15 46 46 H 1.09003 * 109.47020 * 300.00394 * 28 27 26 47 47 H 1.08999 * 109.46854 * 59.99794 * 28 27 26 48 48 H 1.08997 * 109.47169 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2070 2.1901 1.0863 5 6 1.9490 1.8268 2.5259 6 1 1.8260 0.7483 2.6260 7 6 0.6923 2.5587 3.0469 8 6 1.0831 2.8454 4.5168 9 6 2.5956 2.8670 4.4992 10 8 3.2940 3.3303 5.3759 11 7 3.0530 2.2930 3.3730 12 7 2.6560 3.3314 0.6464 13 7 2.7579 3.3007 -0.6344 14 6 2.3757 2.1288 -1.0842 15 7 2.3473 1.7241 -2.4093 16 6 3.6834 1.8082 -3.0142 17 6 4.5316 0.6650 -2.5195 18 1 4.0961 -0.0982 -1.8914 19 6 5.8635 0.5932 -2.8687 20 7 6.6035 -0.4047 -2.4374 21 14 6.6167 1.9134 -3.9546 22 1 7.1547 3.0059 -3.1047 23 1 7.7173 1.3243 -4.7589 24 1 5.5770 2.4595 -4.8634 25 6 1.3712 2.5076 -3.1782 26 6 1.1856 1.8768 -4.5597 27 8 0.6016 0.5805 -4.4170 28 6 0.3853 -0.0991 -5.6553 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 0.5238 3.4844 2.4966 35 1 -0.1842 1.9127 2.9970 36 1 0.7205 2.0532 5.1719 37 1 0.6915 3.8123 4.8330 38 1 3.9921 2.1987 3.1492 39 1 3.5953 1.7523 -4.0991 40 1 4.1494 2.7533 -2.7357 41 1 7.5404 -0.4554 -2.6834 42 1 0.4168 2.5165 -2.6517 43 1 1.7333 3.5295 -3.2910 44 1 0.5301 2.5064 -5.1616 45 1 2.1544 1.7868 -5.0511 46 1 -0.2866 0.4893 -6.2802 47 1 1.3376 -0.2302 -6.1690 48 1 -0.0606 -1.0746 -5.4613 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647715729.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:54 Heat of formation + Delta-G solvation = 17.964735 kcal Electronic energy + Delta-G solvation = -30861.318524 eV Core-core repulsion = 26760.625072 eV Total energy + Delta-G solvation = -4100.693452 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.62789 -40.20895 -38.14913 -36.75135 -36.28341 -35.33027 -32.65219 -31.43259 -30.70696 -30.41617 -29.45456 -27.79807 -26.58378 -25.77712 -23.86318 -22.87873 -22.63827 -22.00252 -20.61565 -20.28610 -19.71643 -17.47029 -17.10989 -16.94655 -16.60523 -16.28789 -15.96848 -15.51501 -15.24612 -15.09340 -14.60569 -14.42001 -14.22487 -13.84599 -13.77041 -13.64250 -13.33079 -13.12144 -12.88260 -12.83078 -12.50545 -12.24608 -12.21375 -12.00091 -11.80162 -11.53734 -11.42295 -11.17544 -11.04680 -10.92503 -10.75891 -10.54318 -10.22285 -9.98468 -9.95839 -9.74891 -9.54369 -9.36430 -9.30866 -8.67773 -8.54002 -8.00169 -6.16689 -4.14988 2.03724 2.47334 2.66828 3.15994 3.23517 3.29712 3.32619 3.42214 3.99297 4.04969 4.24197 4.24818 4.33238 4.40993 4.67485 4.79381 4.84101 5.07168 5.10946 5.13608 5.21623 5.32777 5.33331 5.44791 5.46204 5.51200 5.54771 5.57451 5.57707 5.72160 5.75203 5.78759 5.82137 5.85606 5.97665 6.08867 6.14323 6.45376 6.53778 6.68905 6.79311 6.96020 7.03590 7.27359 7.42304 7.58582 7.91505 8.18816 8.44824 8.86982 9.16139 9.43913 10.96108 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010513 B = 0.004197 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.755449 B = 6670.134542 C = 8278.467985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.105 3.895 3 N -0.451 5.451 4 C 0.134 3.866 5 C 0.232 3.768 6 H 0.097 0.903 7 C -0.121 4.121 8 C -0.154 4.154 9 C 0.525 3.475 10 O -0.536 6.536 11 N -0.711 5.711 12 N -0.268 5.268 13 N -0.324 5.324 14 C 0.404 3.596 15 N -0.451 5.451 16 C 0.168 3.832 17 C -0.511 4.511 18 H 0.076 0.924 19 C 0.074 3.926 20 N -0.896 5.896 21 Si 0.873 3.127 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.267 1.267 25 C 0.069 3.931 26 C 0.066 3.934 27 O -0.373 6.373 28 C 0.033 3.967 29 H 0.076 0.924 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.115 0.885 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.416 0.584 39 H 0.041 0.959 40 H 0.009 0.991 41 H 0.265 0.735 42 H 0.074 0.926 43 H 0.060 0.940 44 H 0.050 0.950 45 H 0.061 0.939 46 H 0.032 0.968 47 H 0.041 0.959 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.784 0.134 3.198 18.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.018 4.018 3 N -0.143 5.143 4 C -0.134 4.134 5 C 0.123 3.877 6 H 0.115 0.885 7 C -0.160 4.160 8 C -0.194 4.194 9 C 0.311 3.689 10 O -0.412 6.412 11 N -0.366 5.366 12 N -0.110 5.110 13 N -0.169 5.169 14 C 0.048 3.952 15 N -0.178 5.178 16 C 0.044 3.956 17 C -0.549 4.549 18 H 0.094 0.906 19 C -0.128 4.128 20 N -0.534 5.534 21 Si 0.700 3.300 22 H -0.200 1.200 23 H -0.210 1.210 24 H -0.192 1.192 25 C -0.059 4.059 26 C -0.011 4.011 27 O -0.291 6.291 28 C -0.064 4.064 29 H 0.095 0.905 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.133 0.867 33 H 0.104 0.896 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.256 0.744 39 H 0.058 0.942 40 H 0.027 0.973 41 H 0.075 0.925 42 H 0.092 0.908 43 H 0.078 0.922 44 H 0.068 0.932 45 H 0.079 0.921 46 H 0.051 0.949 47 H 0.060 0.940 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -17.022 1.122 3.835 17.485 hybrid contribution 0.962 -0.113 -1.296 1.618 sum -16.061 1.009 2.538 16.291 Atomic orbital electron populations 1.22115 0.94145 1.03088 1.02695 1.21875 0.95112 0.79084 1.05682 1.46256 1.48662 1.13335 1.06038 1.24326 1.08023 0.89991 0.91034 1.19627 0.87653 0.98919 0.81488 0.88497 1.22742 0.96071 1.02305 0.94883 1.22393 0.93655 1.05496 0.97851 1.20767 0.91107 0.75991 0.81043 1.90760 1.64106 1.46660 1.39692 1.46151 1.09486 1.60472 1.20529 1.73901 1.15327 1.18097 1.03701 1.74623 1.21201 1.18097 1.02953 1.22311 0.97158 0.86805 0.88935 1.58775 1.11279 1.52792 0.94910 1.20427 0.82445 0.97774 0.95003 1.20841 0.93570 1.08127 1.32388 0.90562 1.24818 0.96790 0.95510 0.95714 1.69862 1.07424 1.30880 1.45230 0.86901 0.79483 0.82438 0.81206 1.19978 1.21012 1.19181 1.22078 0.95617 0.94822 0.93347 1.22640 0.97681 0.84497 0.96332 1.87963 1.82335 1.29997 1.28806 1.22680 0.99748 0.97011 0.86984 0.90505 0.92600 0.91423 0.86712 0.89620 0.88878 0.88698 0.87525 0.87659 0.74407 0.94153 0.97301 0.92512 0.90793 0.92206 0.93199 0.92079 0.94931 0.94014 0.90011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 10.24 37.16 0.38 -1.21 16 2 C 0.11 1.39 6.63 -4.04 -0.03 1.36 16 3 N -0.45 -7.50 2.81 -114.08 -0.32 -7.82 16 4 C 0.13 2.14 6.87 -154.01 -1.06 1.08 16 5 C 0.23 2.63 3.91 -68.16 -0.27 2.36 16 6 H 0.10 0.87 7.12 -51.93 -0.37 0.50 16 7 C -0.12 -1.02 6.68 -25.02 -0.17 -1.19 16 8 C -0.15 -1.31 6.87 -26.66 -0.18 -1.49 16 9 C 0.52 6.98 8.43 -10.86 -0.09 6.89 16 10 O -0.54 -9.35 18.03 5.55 0.10 -9.25 16 11 N -0.71 -9.29 5.86 -53.88 -0.32 -9.60 16 12 N -0.27 -5.27 12.17 32.99 0.40 -4.87 16 13 N -0.32 -7.01 11.87 30.31 0.36 -6.65 16 14 C 0.40 8.07 6.00 -318.87 -1.91 6.16 16 15 N -0.45 -8.96 4.39 -175.88 -0.77 -9.74 16 16 C 0.17 3.93 3.65 -4.98 -0.02 3.91 16 17 C -0.51 -13.96 9.50 -34.44 -0.33 -14.29 16 18 H 0.08 2.25 8.06 -52.48 -0.42 1.83 16 19 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 20 N -0.90 -26.76 13.96 55.43 0.77 -25.99 16 21 Si 0.87 21.34 27.37 -169.99 -4.65 16.68 16 22 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.27 -6.13 6.69 56.52 0.38 -5.75 16 25 C 0.07 1.12 5.28 -3.82 -0.02 1.10 16 26 C 0.07 0.96 6.02 37.16 0.22 1.18 16 27 O -0.37 -5.72 10.65 -35.23 -0.38 -6.09 16 28 C 0.03 0.38 11.01 101.05 1.11 1.50 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.11 1.83 8.12 -51.92 -0.42 1.40 16 33 H 0.09 0.93 7.33 -51.93 -0.38 0.55 16 34 H 0.09 0.93 7.91 -51.92 -0.41 0.52 16 35 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.11 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.42 5.88 8.96 -40.82 -0.37 5.52 16 39 H 0.04 0.92 5.23 -51.93 -0.27 0.64 16 40 H 0.01 0.23 6.85 -51.93 -0.36 -0.13 16 41 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.07 1.11 8.05 -51.93 -0.42 0.69 16 43 H 0.06 0.96 8.12 -51.93 -0.42 0.54 16 44 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.06 0.97 6.08 -51.93 -0.32 0.65 16 46 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 47 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 396.14 15.07 5.97 5.97 Total: -1.00 -36.10 396.14 -8.83 -44.92 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -7.54 Total: 3.08 kcal Atomic # 6 Polarization: 11.80 SS G_CDS: -2.45 Total: 9.35 kcal Atomic # 7 Polarization: -64.79 SS G_CDS: 0.13 Total: -64.66 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: -0.28 Total: -15.34 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.65 Total: 16.68 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.10 -8.83 -44.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647715729.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.888 kcal (2) G-P(sol) polarization free energy of solvation -36.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds