Wall clock time and date at job start Tue Mar 31 2020 20:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46504 * 109.46970 * 2 1 4 4 C 1.36738 * 127.13316 * 85.17201 * 3 2 1 5 5 C 1.50708 * 126.34620 * 359.97438 * 4 3 2 6 6 H 1.09001 * 110.21490 * 14.23374 * 5 4 3 7 7 C 1.54479 * 110.31687 * 252.25815 * 5 4 3 8 8 C 1.54776 * 101.69216 * 215.35460 * 7 5 4 9 9 C 1.51277 * 104.12327 * 25.09975 * 8 7 5 10 10 O 1.21283 * 124.94159 * 163.67543 * 9 8 7 11 11 N 1.34420 * 110.11397 * 343.41274 * 9 8 7 12 12 N 1.30293 * 107.30721 * 179.73313 * 4 3 2 13 13 N 1.28526 * 110.04963 * 0.26304 * 12 4 3 14 14 C 1.31219 * 109.86677 * 0.02562 * 13 12 4 15 15 N 1.38579 * 126.47698 * 180.02562 * 14 13 12 16 16 C 1.46899 * 111.00426 * 58.88026 * 15 14 13 17 17 C 1.50701 * 109.47060 * 75.29790 * 16 15 14 18 18 H 1.08007 * 119.99830 * 5.14025 * 17 16 15 19 19 C 1.37879 * 120.00202 * 185.13392 * 17 16 15 20 20 N 1.31510 * 120.00321 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99759 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.47230 * 89.99975 * 21 19 17 23 23 H 1.48500 * 109.47051 * 210.00173 * 21 19 17 24 24 H 1.48506 * 109.47048 * 329.99766 * 21 19 17 25 25 C 1.46897 * 110.99735 * 294.92513 * 15 14 13 26 26 C 1.53004 * 109.47169 * 190.00380 * 25 15 14 27 27 O 1.42893 * 109.47228 * 64.99780 * 26 25 15 28 28 C 1.42904 * 114.00151 * 180.02562 * 27 26 25 29 29 H 1.09000 * 109.46742 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47006 * 299.99379 * 1 2 3 31 31 H 1.09000 * 109.46862 * 59.99498 * 1 2 3 32 32 H 1.09008 * 109.46943 * 240.00868 * 2 1 3 33 33 H 1.08993 * 109.47252 * 120.00462 * 2 1 3 34 34 H 1.09007 * 110.96823 * 333.66654 * 7 5 4 35 35 H 1.08999 * 110.97220 * 97.38444 * 7 5 4 36 36 H 1.09006 * 110.61501 * 266.39904 * 8 7 5 37 37 H 1.09001 * 110.43286 * 143.70662 * 8 7 5 38 38 H 0.96999 * 124.35003 * 179.84273 * 11 9 8 39 39 H 1.08990 * 109.47507 * 195.30170 * 16 15 14 40 40 H 1.09001 * 109.46630 * 315.30655 * 16 15 14 41 41 H 0.96992 * 120.00405 * 179.97438 * 20 19 17 42 42 H 1.08998 * 109.47373 * 310.00102 * 25 15 14 43 43 H 1.08998 * 109.47375 * 70.00216 * 25 15 14 44 44 H 1.09001 * 109.47460 * 185.00350 * 26 25 15 45 45 H 1.09004 * 109.46828 * 304.99823 * 26 25 15 46 46 H 1.09003 * 109.47020 * 300.00394 * 28 27 26 47 47 H 1.08999 * 109.46854 * 59.99794 * 28 27 26 48 48 H 1.08997 * 109.47169 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2070 2.1901 1.0863 5 6 1.9490 1.8268 2.5259 6 1 1.8260 0.7483 2.6260 7 6 0.6923 2.5587 3.0469 8 6 1.0831 2.8454 4.5168 9 6 2.5956 2.8670 4.4992 10 8 3.2940 3.3303 5.3759 11 7 3.0530 2.2930 3.3730 12 7 2.6560 3.3314 0.6464 13 7 2.7579 3.3007 -0.6344 14 6 2.3757 2.1288 -1.0842 15 7 2.3473 1.7241 -2.4093 16 6 3.6834 1.8082 -3.0142 17 6 4.5316 0.6650 -2.5195 18 1 4.0961 -0.0982 -1.8914 19 6 5.8635 0.5932 -2.8687 20 7 6.6035 -0.4047 -2.4374 21 14 6.6167 1.9134 -3.9546 22 1 7.1547 3.0059 -3.1047 23 1 7.7173 1.3243 -4.7589 24 1 5.5770 2.4595 -4.8634 25 6 1.3712 2.5076 -3.1782 26 6 1.1856 1.8768 -4.5597 27 8 0.6016 0.5805 -4.4170 28 6 0.3853 -0.0991 -5.6553 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 0.5238 3.4844 2.4966 35 1 -0.1842 1.9127 2.9970 36 1 0.7205 2.0532 5.1719 37 1 0.6915 3.8123 4.8330 38 1 3.9921 2.1987 3.1492 39 1 3.5953 1.7523 -4.0991 40 1 4.1494 2.7533 -2.7357 41 1 7.5404 -0.4554 -2.6834 42 1 0.4168 2.5165 -2.6517 43 1 1.7333 3.5295 -3.2910 44 1 0.5301 2.5064 -5.1616 45 1 2.1544 1.7868 -5.0511 46 1 -0.2866 0.4893 -6.2802 47 1 1.3376 -0.2302 -6.1690 48 1 -0.0606 -1.0746 -5.4613 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647715729.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:53 Heat of formation + Delta-G solvation = -9.202794 kcal Electronic energy + Delta-G solvation = -30862.496597 eV Core-core repulsion = 26760.625072 eV Total energy + Delta-G solvation = -4101.871525 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.00391 -41.21282 -39.44496 -37.93998 -37.53830 -36.53760 -34.76626 -32.25544 -31.95295 -31.51094 -31.03423 -29.26241 -27.78044 -26.88298 -24.97857 -24.50839 -23.81294 -23.21042 -21.60191 -21.43205 -21.14883 -19.13749 -18.61383 -18.08167 -17.81218 -17.52296 -17.24639 -16.80043 -16.43450 -16.31803 -16.08027 -15.70744 -15.40353 -15.26220 -14.83506 -14.69224 -14.53772 -14.43895 -14.12448 -13.97543 -13.78540 -13.58801 -13.17614 -13.10570 -12.88631 -12.83919 -12.66870 -12.38902 -12.36091 -12.29550 -11.97251 -11.94058 -11.84697 -11.71797 -11.46864 -11.04600 -10.99926 -10.86456 -10.48409 -10.40072 -9.94597 -9.58015 -8.35819 -6.37691 0.70543 1.25452 1.30138 1.31100 1.37651 1.58206 1.75868 2.26633 2.37632 2.78384 2.95491 2.99731 3.07509 3.39034 3.60699 3.74290 3.85266 3.97106 4.07006 4.12997 4.16885 4.27021 4.34377 4.40343 4.47452 4.51629 4.62244 4.62617 4.67035 4.71978 4.75199 4.85173 4.89188 4.91694 4.93719 4.97724 5.00545 5.15107 5.22796 5.29548 5.41403 5.63455 5.66123 5.75219 5.96403 6.31570 6.39445 6.42743 6.64679 7.13298 7.24439 7.73575 8.79992 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010513 B = 0.004197 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.755449 B = 6670.134542 C = 8278.467985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.098 3.902 3 N -0.450 5.450 4 C 0.157 3.843 5 C 0.227 3.773 6 H 0.133 0.867 7 C -0.109 4.109 8 C -0.138 4.138 9 C 0.514 3.486 10 O -0.587 6.587 11 N -0.719 5.719 12 N -0.310 5.310 13 N -0.361 5.361 14 C 0.381 3.619 15 N -0.452 5.452 16 C 0.181 3.819 17 C -0.508 4.508 18 H 0.041 0.959 19 C 0.018 3.982 20 N -0.940 5.940 21 Si 0.931 3.069 22 H -0.283 1.283 23 H -0.276 1.276 24 H -0.241 1.241 25 C 0.068 3.932 26 C 0.069 3.931 27 O -0.397 6.397 28 C 0.028 3.972 29 H 0.101 0.899 30 H 0.082 0.918 31 H 0.047 0.953 32 H 0.079 0.921 33 H 0.112 0.888 34 H 0.076 0.924 35 H 0.141 0.859 36 H 0.143 0.857 37 H 0.116 0.884 38 H 0.405 0.595 39 H 0.053 0.947 40 H -0.009 1.009 41 H 0.266 0.734 42 H 0.086 0.914 43 H 0.059 0.941 44 H 0.087 0.913 45 H 0.045 0.955 46 H 0.058 0.942 47 H 0.033 0.967 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.947 -0.109 3.231 21.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 N -0.141 5.141 4 C -0.112 4.112 5 C 0.119 3.881 6 H 0.150 0.850 7 C -0.148 4.148 8 C -0.178 4.178 9 C 0.303 3.697 10 O -0.468 6.468 11 N -0.371 5.371 12 N -0.150 5.150 13 N -0.205 5.205 14 C 0.023 3.977 15 N -0.178 5.178 16 C 0.055 3.945 17 C -0.546 4.546 18 H 0.059 0.941 19 C -0.180 4.180 20 N -0.580 5.580 21 Si 0.755 3.245 22 H -0.209 1.209 23 H -0.201 1.201 24 H -0.165 1.165 25 C -0.059 4.059 26 C -0.007 4.007 27 O -0.317 6.317 28 C -0.068 4.068 29 H 0.119 0.881 30 H 0.101 0.899 31 H 0.066 0.934 32 H 0.098 0.902 33 H 0.130 0.870 34 H 0.095 0.905 35 H 0.159 0.841 36 H 0.161 0.839 37 H 0.134 0.866 38 H 0.242 0.758 39 H 0.070 0.930 40 H 0.009 0.991 41 H 0.075 0.925 42 H 0.105 0.895 43 H 0.078 0.922 44 H 0.105 0.895 45 H 0.063 0.937 46 H 0.076 0.924 47 H 0.052 0.948 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -20.249 0.866 3.835 20.627 hybrid contribution 1.900 -0.125 -1.232 2.268 sum -18.349 0.741 2.602 18.547 Atomic orbital electron populations 1.22061 0.90881 1.04789 1.03022 1.22154 0.97725 0.77154 1.05275 1.46505 1.48099 1.14231 1.05289 1.25202 1.04790 0.88638 0.92610 1.20206 0.88357 1.01243 0.78318 0.84999 1.22818 0.95871 1.02146 0.93954 1.22445 0.89241 1.07502 0.98577 1.21685 0.93289 0.74607 0.80097 1.90728 1.65849 1.48738 1.41439 1.46379 1.09526 1.60303 1.20940 1.73807 1.17711 1.20383 1.03148 1.74495 1.22342 1.19496 1.04154 1.22417 0.98457 0.87268 0.89511 1.58704 1.09902 1.53867 0.95349 1.20105 0.83874 0.94909 0.95576 1.21042 0.94111 1.08245 1.31204 0.94071 1.25631 0.97424 0.97608 0.97324 1.69995 1.07831 1.33013 1.47187 0.85960 0.79345 0.79384 0.79816 1.20913 1.20086 1.16465 1.22218 0.95016 0.94567 0.94092 1.22621 0.97773 0.85033 0.95320 1.87921 1.82371 1.30455 1.30905 1.22858 1.00035 0.97840 0.86103 0.88064 0.89888 0.93381 0.90204 0.86982 0.90510 0.84118 0.83946 0.86558 0.75787 0.92966 0.99143 0.92460 0.89547 0.92249 0.89540 0.93731 0.92390 0.94802 0.88798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 10.24 71.98 0.74 -1.74 16 2 C 0.10 2.47 6.63 86.38 0.57 3.05 16 3 N -0.45 -14.78 2.81 -514.82 -1.45 -16.23 16 4 C 0.16 4.87 6.87 137.64 0.95 5.82 16 5 C 0.23 4.55 3.91 44.70 0.17 4.72 16 6 H 0.13 1.79 7.12 -2.39 -0.02 1.77 16 7 C -0.11 -1.40 6.68 31.70 0.21 -1.19 16 8 C -0.14 -1.84 6.87 30.64 0.21 -1.63 16 9 C 0.51 13.13 8.43 87.90 0.74 13.87 16 10 O -0.59 -20.69 18.03 -3.04 -0.05 -20.75 16 11 N -0.72 -18.25 5.86 -442.97 -2.60 -20.85 16 12 N -0.31 -12.35 12.17 -49.53 -0.60 -12.96 16 13 N -0.36 -15.98 11.87 -58.00 -0.69 -16.67 16 14 C 0.38 15.48 6.00 260.11 1.56 17.05 16 15 N -0.45 -18.22 4.39 -710.38 -3.12 -21.34 16 16 C 0.18 8.61 3.65 85.56 0.31 8.92 16 17 C -0.51 -28.68 9.50 25.60 0.24 -28.44 16 18 H 0.04 2.56 8.06 -2.91 -0.02 2.53 16 19 C 0.02 1.07 5.47 84.66 0.46 1.53 16 20 N -0.94 -57.97 13.96 21.45 0.30 -57.67 16 21 Si 0.93 44.54 27.37 68.60 1.88 46.42 16 22 H -0.28 -13.89 7.11 99.48 0.71 -13.18 16 23 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 24 H -0.24 -10.45 6.69 99.48 0.67 -9.78 16 25 C 0.07 2.17 5.28 86.30 0.46 2.63 16 26 C 0.07 1.92 6.02 71.98 0.43 2.36 16 27 O -0.40 -11.69 10.65 -148.98 -1.59 -13.28 16 28 C 0.03 0.61 11.01 113.37 1.25 1.85 16 29 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.08 2.61 8.12 -2.38 -0.02 2.59 16 33 H 0.11 2.18 7.33 -2.39 -0.02 2.16 16 34 H 0.08 1.31 7.91 -2.38 -0.02 1.29 16 35 H 0.14 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.14 0.98 8.14 -2.38 -0.02 0.96 16 37 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.40 11.76 8.96 -92.71 -0.83 10.93 16 39 H 0.05 2.36 5.23 -2.39 -0.01 2.35 16 40 H -0.01 -0.48 6.85 -2.39 -0.02 -0.49 16 41 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 42 H 0.09 2.52 8.05 -2.39 -0.02 2.50 16 43 H 0.06 1.89 8.12 -2.39 -0.02 1.87 16 44 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.04 1.37 6.08 -2.39 -0.01 1.36 16 46 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 47 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -85.20 396.14 0.50 -84.70 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: 0.11 Total: 19.80 kcal Atomic # 6 Polarization: 20.49 SS G_CDS: 8.31 Total: 28.80 kcal Atomic # 7 Polarization: -137.54 SS G_CDS: -8.15 Total: -145.70 kcal Atomic # 8 Polarization: -32.39 SS G_CDS: -1.64 Total: -34.03 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.88 Total: 46.42 kcal Total: -85.20 0.50 -84.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647715729.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.495 kcal (2) G-P(sol) polarization free energy of solvation -85.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds