Wall clock time and date at job start Tue Mar 31 2020 19:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47365 * 2 1 4 4 N 1.46495 * 109.47127 * 120.00316 * 2 1 3 5 5 C 1.34778 * 119.99963 * 274.99612 * 4 2 1 6 6 O 1.21281 * 119.99689 * 0.02562 * 5 4 2 7 7 C 1.50698 * 120.00211 * 180.02562 * 5 4 2 8 8 N 1.46502 * 109.47127 * 180.02562 * 7 5 4 9 9 N 1.40175 * 126.34749 * 270.31075 * 8 7 5 10 10 C 1.29408 * 108.13675 * 180.14834 * 9 8 7 11 11 N 1.37356 * 108.82811 * 359.59017 * 10 9 8 12 12 C 1.46498 * 125.83102 * 180.22561 * 11 10 9 13 13 C 1.34813 * 108.33471 * 0.26615 * 11 10 9 14 14 O 1.21819 * 126.29881 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.46680 * 240.00033 * 2 1 3 16 16 H 1.08998 * 109.49904 * 299.93187 * 15 2 1 17 17 C 1.53041 * 109.49842 * 60.00037 * 15 2 1 18 18 C 1.53047 * 109.53848 * 181.31193 * 17 15 2 19 19 C 1.53194 * 109.31197 * 298.63545 * 18 17 15 20 20 N 1.46930 * 108.77553 * 54.63317 * 19 18 17 21 21 C 1.36935 * 120.62931 * 126.41219 * 20 19 18 22 22 H 1.07999 * 120.00278 * 207.67072 * 21 20 19 23 23 C 1.38814 * 120.00107 * 27.66872 * 21 20 19 24 24 N 1.31621 * 119.99786 * 17.36920 * 23 21 20 25 25 Si 1.86799 * 120.00244 * 197.36594 * 23 21 20 26 26 H 1.48504 * 109.47179 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47176 * 119.99548 * 25 23 21 28 28 H 1.48499 * 109.47559 * 240.00167 * 25 23 21 29 29 C 1.46921 * 118.74063 * 306.38889 * 20 19 18 30 30 H 1.09000 * 109.47739 * 60.00068 * 1 2 3 31 31 H 1.09003 * 109.47126 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46954 * 299.99968 * 1 2 3 33 33 H 0.97003 * 120.00443 * 95.00394 * 4 2 1 34 34 H 1.09006 * 109.47109 * 60.00557 * 7 5 4 35 35 H 1.08995 * 109.47290 * 300.00224 * 7 5 4 36 36 H 1.07998 * 125.58243 * 179.85460 * 10 9 8 37 37 H 1.09002 * 109.47269 * 0.02824 * 12 11 10 38 38 H 1.08997 * 109.46924 * 120.02340 * 12 11 10 39 39 H 1.09001 * 109.47139 * 240.02853 * 12 11 10 40 40 H 1.08994 * 109.46139 * 301.33458 * 17 15 2 41 41 H 1.09007 * 109.45873 * 61.30662 * 17 15 2 42 42 H 1.09003 * 109.49333 * 58.58435 * 18 17 15 43 43 H 1.08999 * 109.49729 * 178.65033 * 18 17 15 44 44 H 1.09002 * 109.58392 * 174.41720 * 19 18 17 45 45 H 1.08997 * 109.58848 * 294.70308 * 19 18 17 46 46 H 0.97000 * 119.99770 * 180.02562 * 24 23 21 47 47 H 1.08996 * 109.58888 * 293.82641 * 29 20 19 48 48 H 1.09005 * 109.58595 * 173.39489 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8582 1.1583 2.4116 7 6 2.6500 -0.7286 3.5874 8 7 2.6986 0.2126 4.7090 9 7 3.7843 1.0242 5.0660 10 6 3.4472 1.7121 6.1090 11 7 2.1580 1.3887 6.4556 12 6 1.4048 1.9526 7.5785 13 6 1.7047 0.4632 5.5866 14 8 0.6010 -0.0524 5.5927 15 6 2.0399 -0.7213 -1.2493 16 1 1.6777 -1.7493 -1.2491 17 6 1.5300 -0.0003 -2.4993 18 6 2.0124 -0.7399 -3.7493 19 6 3.5440 -0.7369 -3.7803 20 7 4.0437 -1.2970 -2.5172 21 6 4.9327 -2.3386 -2.5193 22 1 4.9619 -3.0253 -1.6862 23 6 5.7963 -2.5120 -3.5921 24 7 6.0119 -1.5203 -4.4303 25 14 6.6525 -4.1526 -3.8463 26 1 6.2436 -5.0957 -2.7745 27 1 6.2703 -4.7109 -5.1683 28 1 8.1236 -3.9560 -3.7986 29 6 3.5719 -0.7181 -1.2520 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.2491 -1.6318 1.1525 34 1 3.6494 -1.1204 3.3978 35 1 1.9778 -1.5509 3.8325 36 1 4.0751 2.4268 6.6203 37 1 2.0259 2.6769 8.1055 38 1 0.5090 2.4473 7.2031 39 1 1.1190 1.1533 8.2622 40 1 0.4404 0.0204 -2.4874 41 1 1.9126 1.0204 -2.5112 42 1 1.6510 -1.7680 -3.7259 43 1 1.6291 -0.2396 -4.6386 44 1 3.8938 -1.3460 -4.6138 45 1 3.9052 0.2848 -3.8975 46 1 6.6151 -1.6416 -5.1802 47 1 3.9352 0.3055 -1.1605 48 1 3.9400 -1.3148 -0.4174 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661996519.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:08 Heat of formation + Delta-G solvation = 31.960964 kcal Electronic energy + Delta-G solvation = -29856.150082 eV Core-core repulsion = 25756.063552 eV Total energy + Delta-G solvation = -4100.086530 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.59922 -39.85061 -37.94813 -37.39878 -35.60138 -35.08296 -33.08154 -32.17414 -30.96960 -30.45563 -28.69747 -28.29321 -27.01685 -25.20608 -23.70134 -22.84738 -21.95698 -21.63300 -20.65067 -20.35818 -19.12591 -17.89599 -17.58965 -16.75833 -16.43558 -16.33220 -16.07097 -15.60375 -14.99512 -14.79370 -14.73962 -14.34853 -14.05662 -13.70873 -13.47123 -13.39226 -13.16582 -13.15401 -12.85394 -12.67710 -12.45352 -12.34099 -12.21268 -12.08129 -11.77702 -11.49091 -11.10554 -10.97599 -10.71197 -10.65620 -10.43977 -10.40477 -10.19203 -10.14347 -9.91349 -9.79936 -9.53589 -9.41432 -8.91955 -8.73036 -8.46575 -6.67050 -5.78912 -3.21293 1.46046 1.76697 2.48780 2.62032 2.84566 3.30961 3.36110 3.44007 3.45738 4.13996 4.46768 4.47407 4.66023 4.67325 4.87173 4.95374 5.00107 5.12082 5.14525 5.28338 5.38047 5.42908 5.56303 5.57411 5.61230 5.77617 5.82423 5.83896 6.04206 6.08925 6.14761 6.27731 6.31197 6.35973 6.45209 6.56135 6.62437 6.71913 6.81544 6.88292 6.99249 7.39831 7.40698 7.54163 7.68240 7.78724 7.84947 8.24193 8.44454 9.20878 9.84767 10.41680 11.29348 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016050 B = 0.002581 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.115780 B =10847.603928 C =11935.845800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.150 3.850 3 H 0.085 0.915 4 N -0.715 5.715 5 C 0.499 3.501 6 O -0.531 6.531 7 C 0.141 3.859 8 N -0.435 5.435 9 N -0.269 5.269 10 C 0.252 3.748 11 N -0.563 5.563 12 C 0.103 3.897 13 C 0.652 3.348 14 O -0.554 6.554 15 C -0.110 4.110 16 H 0.072 0.928 17 C -0.101 4.101 18 C -0.142 4.142 19 C 0.169 3.831 20 N -0.592 5.592 21 C -0.251 4.251 22 H 0.065 0.935 23 C 0.001 3.999 24 N -0.901 5.901 25 Si 0.901 3.099 26 H -0.278 1.278 27 H -0.289 1.289 28 H -0.291 1.291 29 C 0.156 3.844 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.402 0.598 34 H 0.128 0.872 35 H 0.124 0.876 36 H 0.231 0.769 37 H 0.093 0.907 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.050 0.950 41 H 0.055 0.945 42 H 0.053 0.947 43 H 0.049 0.951 44 H 0.086 0.914 45 H 0.017 0.983 46 H 0.253 0.747 47 H 0.016 0.984 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.436 5.387 20.676 22.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.045 3.955 3 H 0.103 0.897 4 N -0.367 5.367 5 C 0.282 3.718 6 O -0.407 6.407 7 C 0.015 3.985 8 N -0.255 5.255 9 N -0.089 5.089 10 C -0.047 4.047 11 N -0.292 5.292 12 C -0.040 4.040 13 C 0.352 3.648 14 O -0.427 6.427 15 C -0.131 4.131 16 H 0.090 0.910 17 C -0.139 4.139 18 C -0.181 4.181 19 C 0.043 3.957 20 N -0.314 5.314 21 C -0.381 4.381 22 H 0.083 0.917 23 C -0.197 4.197 24 N -0.546 5.546 25 Si 0.731 3.269 26 H -0.203 1.203 27 H -0.216 1.216 28 H -0.218 1.218 29 C 0.029 3.971 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.237 0.763 34 H 0.146 0.854 35 H 0.142 0.858 36 H 0.247 0.753 37 H 0.112 0.888 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.104 0.896 45 H 0.035 0.965 46 H 0.063 0.937 47 H 0.034 0.966 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.584 5.613 19.850 22.343 hybrid contribution 0.106 -0.955 0.225 0.987 sum -8.478 4.658 20.075 22.284 Atomic orbital electron populations 1.22198 0.95685 1.01933 1.02126 1.21055 0.93456 0.97498 0.83480 0.89687 1.46007 1.66975 1.14247 1.09430 1.20791 0.78272 0.87867 0.84836 1.90712 1.49470 1.15783 1.84750 1.21269 1.05642 0.89417 0.82145 1.48193 1.11131 1.38765 1.27397 1.77039 1.11173 1.07335 1.13394 1.25952 0.85120 0.99490 0.94148 1.45856 1.14490 1.39185 1.29642 1.21786 0.96710 0.99284 0.86176 1.16629 0.84892 0.82014 0.81308 1.91080 1.18638 1.57217 1.75812 1.21975 0.99557 0.99209 0.92377 0.90958 1.21446 0.98748 0.99039 0.94697 1.22175 1.00848 0.99336 0.95719 1.20792 0.87449 0.97245 0.90228 1.44052 1.49722 1.38095 0.99504 1.19192 1.11205 1.02173 1.05535 0.91703 1.25039 0.97309 0.97482 0.99896 1.70055 1.38039 1.29311 1.17178 0.86247 0.79031 0.83848 0.77767 1.20276 1.21598 1.21764 1.20856 0.89834 0.96353 0.90025 0.91292 0.92590 0.92765 0.76299 0.85391 0.85792 0.75262 0.88849 0.90518 0.90523 0.93128 0.92631 0.92773 0.93258 0.89574 0.96529 0.93699 0.96588 0.93063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 9.13 37.16 0.34 -1.80 16 2 C 0.15 2.20 2.16 -67.93 -0.15 2.05 16 3 H 0.09 1.44 7.58 -51.93 -0.39 1.04 16 4 N -0.71 -9.38 4.48 -53.81 -0.24 -9.62 16 5 C 0.50 7.23 7.86 -10.99 -0.09 7.14 16 6 O -0.53 -9.90 16.09 5.56 0.09 -9.81 16 7 C 0.14 1.61 6.87 -5.19 -0.04 1.58 16 8 N -0.44 -5.77 3.11 -66.31 -0.21 -5.98 16 9 N -0.27 -3.18 12.53 29.87 0.37 -2.80 16 10 C 0.25 1.97 12.61 -89.12 -1.12 0.84 16 11 N -0.56 -5.31 3.14 -130.11 -0.41 -5.72 16 12 C 0.10 0.52 11.08 59.85 0.66 1.18 16 13 C 0.65 9.09 8.60 -86.74 -0.75 8.34 16 14 O -0.55 -9.41 17.76 5.08 0.09 -9.32 16 15 C -0.11 -1.80 1.97 -90.49 -0.18 -1.98 16 16 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 17 C -0.10 -1.67 4.85 -26.69 -0.13 -1.80 16 18 C -0.14 -2.66 6.08 -26.61 -0.16 -2.82 16 19 C 0.17 4.00 5.31 -3.71 -0.02 3.98 16 20 N -0.59 -14.51 2.99 -172.31 -0.52 -15.03 16 21 C -0.25 -6.75 9.59 -15.06 -0.14 -6.90 16 22 H 0.07 1.69 7.89 -52.49 -0.41 1.28 16 23 C 0.00 0.04 4.91 -17.43 -0.09 -0.05 16 24 N -0.90 -26.08 11.19 55.49 0.62 -25.46 16 25 Si 0.90 21.42 29.59 -169.99 -5.03 16.39 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 29 C 0.16 3.16 5.56 -3.71 -0.02 3.14 16 30 H 0.07 0.86 6.40 -51.93 -0.33 0.53 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.40 4.35 8.43 -40.82 -0.34 4.00 16 34 H 0.13 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.12 1.17 8.11 -51.93 -0.42 0.74 16 36 H 0.23 0.45 8.06 -52.49 -0.42 0.03 16 37 H 0.09 0.10 8.07 -51.93 -0.42 -0.31 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.05 0.72 6.36 -51.93 -0.33 0.39 16 41 H 0.05 0.94 8.14 -51.92 -0.42 0.52 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.09 2.29 6.04 -51.93 -0.31 1.98 16 45 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.25 7.06 8.31 -40.82 -0.34 6.73 16 47 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.05 0.99 7.45 -51.93 -0.39 0.60 16 LS Contribution 391.04 15.07 5.89 5.89 Total: -1.00 -38.33 391.04 -8.77 -47.10 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -7.56 Total: 1.44 kcal Atomic # 6 Polarization: 14.79 SS G_CDS: -1.88 Total: 12.91 kcal Atomic # 7 Polarization: -64.23 SS G_CDS: -0.38 Total: -64.60 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: 0.18 Total: -19.14 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -38.33 -8.77 -47.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661996519.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.064 kcal (2) G-P(sol) polarization free energy of solvation -38.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds