Wall clock time and date at job start Tue Mar 31 2020 19:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47365 * 2 1 4 4 N 1.46495 * 109.47127 * 120.00316 * 2 1 3 5 5 C 1.34778 * 119.99963 * 274.99612 * 4 2 1 6 6 O 1.21281 * 119.99689 * 0.02562 * 5 4 2 7 7 C 1.50698 * 120.00211 * 180.02562 * 5 4 2 8 8 N 1.46502 * 109.47127 * 180.02562 * 7 5 4 9 9 N 1.40175 * 126.34749 * 270.31075 * 8 7 5 10 10 C 1.29408 * 108.13675 * 180.14834 * 9 8 7 11 11 N 1.37356 * 108.82811 * 359.59017 * 10 9 8 12 12 C 1.46498 * 125.83102 * 180.22561 * 11 10 9 13 13 C 1.34813 * 108.33471 * 0.26615 * 11 10 9 14 14 O 1.21819 * 126.29881 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.46680 * 240.00033 * 2 1 3 16 16 H 1.08998 * 109.49904 * 299.93187 * 15 2 1 17 17 C 1.53041 * 109.49842 * 60.00037 * 15 2 1 18 18 C 1.53047 * 109.53848 * 181.31193 * 17 15 2 19 19 C 1.53194 * 109.31197 * 298.63545 * 18 17 15 20 20 N 1.46930 * 108.77553 * 54.63317 * 19 18 17 21 21 C 1.36935 * 120.62931 * 126.41219 * 20 19 18 22 22 H 1.07999 * 120.00278 * 207.67072 * 21 20 19 23 23 C 1.38814 * 120.00107 * 27.66872 * 21 20 19 24 24 N 1.31621 * 119.99786 * 17.36920 * 23 21 20 25 25 Si 1.86799 * 120.00244 * 197.36594 * 23 21 20 26 26 H 1.48504 * 109.47179 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47176 * 119.99548 * 25 23 21 28 28 H 1.48499 * 109.47559 * 240.00167 * 25 23 21 29 29 C 1.46921 * 118.74063 * 306.38889 * 20 19 18 30 30 H 1.09000 * 109.47739 * 60.00068 * 1 2 3 31 31 H 1.09003 * 109.47126 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46954 * 299.99968 * 1 2 3 33 33 H 0.97003 * 120.00443 * 95.00394 * 4 2 1 34 34 H 1.09006 * 109.47109 * 60.00557 * 7 5 4 35 35 H 1.08995 * 109.47290 * 300.00224 * 7 5 4 36 36 H 1.07998 * 125.58243 * 179.85460 * 10 9 8 37 37 H 1.09002 * 109.47269 * 0.02824 * 12 11 10 38 38 H 1.08997 * 109.46924 * 120.02340 * 12 11 10 39 39 H 1.09001 * 109.47139 * 240.02853 * 12 11 10 40 40 H 1.08994 * 109.46139 * 301.33458 * 17 15 2 41 41 H 1.09007 * 109.45873 * 61.30662 * 17 15 2 42 42 H 1.09003 * 109.49333 * 58.58435 * 18 17 15 43 43 H 1.08999 * 109.49729 * 178.65033 * 18 17 15 44 44 H 1.09002 * 109.58392 * 174.41720 * 19 18 17 45 45 H 1.08997 * 109.58848 * 294.70308 * 19 18 17 46 46 H 0.97000 * 119.99770 * 180.02562 * 24 23 21 47 47 H 1.08996 * 109.58888 * 293.82641 * 29 20 19 48 48 H 1.09005 * 109.58595 * 173.39489 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8582 1.1583 2.4116 7 6 2.6500 -0.7286 3.5874 8 7 2.6986 0.2126 4.7090 9 7 3.7843 1.0242 5.0660 10 6 3.4472 1.7121 6.1090 11 7 2.1580 1.3887 6.4556 12 6 1.4048 1.9526 7.5785 13 6 1.7047 0.4632 5.5866 14 8 0.6010 -0.0524 5.5927 15 6 2.0399 -0.7213 -1.2493 16 1 1.6777 -1.7493 -1.2491 17 6 1.5300 -0.0003 -2.4993 18 6 2.0124 -0.7399 -3.7493 19 6 3.5440 -0.7369 -3.7803 20 7 4.0437 -1.2970 -2.5172 21 6 4.9327 -2.3386 -2.5193 22 1 4.9619 -3.0253 -1.6862 23 6 5.7963 -2.5120 -3.5921 24 7 6.0119 -1.5203 -4.4303 25 14 6.6525 -4.1526 -3.8463 26 1 6.2436 -5.0957 -2.7745 27 1 6.2703 -4.7109 -5.1683 28 1 8.1236 -3.9560 -3.7986 29 6 3.5719 -0.7181 -1.2520 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.2491 -1.6318 1.1525 34 1 3.6494 -1.1204 3.3978 35 1 1.9778 -1.5509 3.8325 36 1 4.0751 2.4268 6.6203 37 1 2.0259 2.6769 8.1055 38 1 0.5090 2.4473 7.2031 39 1 1.1190 1.1533 8.2622 40 1 0.4404 0.0204 -2.4874 41 1 1.9126 1.0204 -2.5112 42 1 1.6510 -1.7680 -3.7259 43 1 1.6291 -0.2396 -4.6386 44 1 3.8938 -1.3460 -4.6138 45 1 3.9052 0.2848 -3.8975 46 1 6.6151 -1.6416 -5.1802 47 1 3.9352 0.3055 -1.1605 48 1 3.9400 -1.3148 -0.4174 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661996519.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:07 Heat of formation + Delta-G solvation = 5.938471 kcal Electronic energy + Delta-G solvation = -29857.278502 eV Core-core repulsion = 25756.063552 eV Total energy + Delta-G solvation = -4101.214950 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.41560 -41.05325 -39.43894 -38.41698 -36.83469 -36.14344 -34.71595 -33.18291 -32.45941 -32.04480 -30.03936 -29.23324 -27.70736 -27.07932 -25.01141 -23.78221 -23.59560 -22.63321 -21.94137 -21.55624 -20.65392 -18.86231 -18.59373 -18.52331 -17.40843 -17.24096 -17.09257 -16.79446 -16.57177 -16.00347 -15.90907 -15.58572 -15.34827 -15.06069 -14.97037 -14.66882 -14.32217 -14.17625 -14.06012 -13.78653 -13.55578 -13.49161 -13.42120 -13.16119 -12.98593 -12.91690 -12.80666 -12.62898 -12.26755 -12.20899 -11.93808 -11.77772 -11.61439 -11.49811 -11.40392 -11.24944 -11.08003 -10.72279 -10.53006 -10.11879 -9.65872 -8.67376 -7.85545 -5.31223 0.67020 1.08990 1.47338 1.49341 1.50814 1.54902 1.59601 2.09807 2.35092 2.52112 3.29077 3.45858 3.52927 3.67287 3.93117 3.99995 4.05093 4.08754 4.10939 4.15230 4.33206 4.41676 4.43290 4.48453 4.49123 4.64714 4.77229 4.78472 4.83280 4.86675 4.88254 4.93072 4.99426 5.04476 5.10452 5.23670 5.24100 5.33854 5.44269 5.51739 5.59080 5.67134 5.68515 5.78891 6.39730 6.47766 6.60653 6.91754 7.15621 7.16008 7.87219 8.39708 9.20957 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016050 B = 0.002581 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.115780 B =10847.603928 C =11935.845800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.158 3.842 3 H 0.060 0.940 4 N -0.707 5.707 5 C 0.497 3.503 6 O -0.577 6.577 7 C 0.139 3.861 8 N -0.445 5.445 9 N -0.315 5.315 10 C 0.277 3.723 11 N -0.559 5.559 12 C 0.094 3.906 13 C 0.632 3.368 14 O -0.599 6.599 15 C -0.092 4.092 16 H 0.083 0.917 17 C -0.099 4.099 18 C -0.129 4.129 19 C 0.172 3.828 20 N -0.608 5.608 21 C -0.257 4.257 22 H 0.073 0.927 23 C -0.055 4.055 24 N -0.938 5.938 25 Si 0.967 3.033 26 H -0.262 1.262 27 H -0.292 1.292 28 H -0.295 1.295 29 C 0.156 3.844 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.039 0.961 33 H 0.416 0.584 34 H 0.152 0.848 35 H 0.143 0.857 36 H 0.289 0.711 37 H 0.142 0.858 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.047 0.953 42 H 0.057 0.943 43 H 0.068 0.932 44 H 0.052 0.948 45 H -0.012 1.012 46 H 0.248 0.752 47 H -0.006 1.006 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.100 4.915 22.677 24.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.053 3.947 3 H 0.078 0.922 4 N -0.359 5.359 5 C 0.282 3.718 6 O -0.457 6.457 7 C 0.014 3.986 8 N -0.264 5.264 9 N -0.136 5.136 10 C -0.020 4.020 11 N -0.287 5.287 12 C -0.046 4.046 13 C 0.331 3.669 14 O -0.476 6.476 15 C -0.113 4.113 16 H 0.101 0.899 17 C -0.137 4.137 18 C -0.168 4.168 19 C 0.046 3.954 20 N -0.331 5.331 21 C -0.387 4.387 22 H 0.090 0.910 23 C -0.250 4.250 24 N -0.585 5.585 25 Si 0.795 3.205 26 H -0.186 1.186 27 H -0.219 1.219 28 H -0.223 1.223 29 C 0.030 3.970 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.058 0.942 33 H 0.253 0.747 34 H 0.170 0.830 35 H 0.160 0.840 36 H 0.304 0.696 37 H 0.160 0.840 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.104 0.896 41 H 0.066 0.934 42 H 0.076 0.924 43 H 0.087 0.913 44 H 0.071 0.929 45 H 0.006 0.994 46 H 0.057 0.943 47 H 0.012 0.988 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.245 5.135 21.895 24.315 hybrid contribution 0.362 -0.697 -0.314 0.846 sum -8.882 4.438 21.581 23.755 Atomic orbital electron populations 1.22116 0.93957 1.02945 1.02018 1.20840 0.94603 0.96022 0.83253 0.92170 1.45931 1.66391 1.14799 1.08771 1.21347 0.77305 0.87384 0.85731 1.90683 1.51589 1.17872 1.85530 1.21439 1.07203 0.89306 0.80619 1.48376 1.11468 1.39133 1.27408 1.77041 1.11364 1.09238 1.15924 1.27151 0.84427 0.98052 0.92416 1.46137 1.15203 1.37813 1.29501 1.22163 0.97220 1.00205 0.85042 1.17036 0.84657 0.82882 0.82325 1.91020 1.20348 1.59050 1.77175 1.21739 0.96199 1.00045 0.93298 0.89890 1.21449 1.00807 0.98096 0.93303 1.22000 0.96664 1.00227 0.97938 1.20634 0.90918 0.94685 0.89133 1.44330 1.49777 1.38043 1.00983 1.19587 1.10970 1.02700 1.05489 0.90961 1.25828 0.98579 1.00550 1.00048 1.70219 1.39168 1.31279 1.17798 0.85212 0.77384 0.80175 0.77705 1.18588 1.21895 1.22281 1.20957 0.92649 0.94810 0.88554 0.90113 0.90939 0.94174 0.74725 0.83030 0.83985 0.69566 0.83964 0.91510 0.90337 0.89594 0.93420 0.92449 0.91346 0.92918 0.99393 0.94261 0.98823 0.92309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 9.13 71.98 0.66 -3.07 16 2 C 0.16 4.47 2.16 44.99 0.10 4.56 16 3 H 0.06 2.04 7.58 -2.39 -0.02 2.03 16 4 N -0.71 -17.85 4.48 -442.55 -1.98 -19.83 16 5 C 0.50 14.32 7.86 87.66 0.69 15.01 16 6 O -0.58 -21.92 16.09 -3.03 -0.05 -21.97 16 7 C 0.14 3.11 6.87 85.63 0.59 3.70 16 8 N -0.45 -11.61 3.11 -481.78 -1.50 -13.11 16 9 N -0.31 -7.03 12.53 -59.42 -0.74 -7.77 16 10 C 0.28 3.57 12.61 179.82 2.27 5.84 16 11 N -0.56 -9.60 3.14 -683.69 -2.15 -11.75 16 12 C 0.09 0.74 11.08 127.77 1.42 2.15 16 13 C 0.63 17.52 8.60 178.99 1.54 19.06 16 14 O -0.60 -20.78 17.76 -4.73 -0.08 -20.87 16 15 C -0.09 -2.87 1.97 -10.71 -0.02 -2.89 16 16 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 17 C -0.10 -3.06 4.85 30.62 0.15 -2.91 16 18 C -0.13 -4.71 6.08 30.67 0.19 -4.52 16 19 C 0.17 8.35 5.31 86.36 0.46 8.81 16 20 N -0.61 -30.15 2.99 -699.08 -2.09 -32.25 16 21 C -0.26 -13.86 9.59 84.03 0.81 -13.05 16 22 H 0.07 3.71 7.89 -2.91 -0.02 3.69 16 23 C -0.06 -3.06 4.91 84.86 0.42 -2.65 16 24 N -0.94 -56.00 11.19 21.65 0.24 -55.75 16 25 Si 0.97 44.41 29.59 68.60 2.03 46.44 16 26 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 27 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 28 H -0.30 -13.71 7.11 99.48 0.71 -13.00 16 29 C 0.16 6.31 5.56 86.37 0.48 6.79 16 30 H 0.08 1.78 6.40 -2.39 -0.02 1.77 16 31 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.42 8.26 8.43 -92.71 -0.78 7.47 16 34 H 0.15 2.55 8.14 -2.38 -0.02 2.53 16 35 H 0.14 2.57 8.11 -2.39 -0.02 2.55 16 36 H 0.29 -0.31 8.06 -2.91 -0.02 -0.33 16 37 H 0.14 -0.31 8.07 -2.39 -0.02 -0.33 16 38 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.09 2.13 6.36 -2.39 -0.02 2.12 16 41 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 42 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 44 H 0.05 2.90 6.04 -2.39 -0.01 2.88 16 45 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 46 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 47 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 48 H 0.06 2.24 7.45 -2.38 -0.02 2.22 16 Total: -1.00 -88.49 391.04 3.59 -84.89 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 0.19 Total: 15.13 kcal Atomic # 6 Polarization: 27.10 SS G_CDS: 9.73 Total: 36.83 kcal Atomic # 7 Polarization: -132.24 SS G_CDS: -8.22 Total: -140.47 kcal Atomic # 8 Polarization: -42.70 SS G_CDS: -0.13 Total: -42.84 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -88.49 3.59 -84.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661996519.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.833 kcal (2) G-P(sol) polarization free energy of solvation -88.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds