Wall clock time and date at job start Tue Mar 31 2020 19:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47222 * 2 1 4 4 N 1.46500 * 109.47161 * 239.99810 * 2 1 3 5 5 C 1.34777 * 120.00010 * 85.00517 * 4 2 1 6 6 O 1.21286 * 119.99960 * 359.97438 * 5 4 2 7 7 C 1.50698 * 119.99834 * 180.02562 * 5 4 2 8 8 N 1.46511 * 109.47049 * 179.97438 * 7 5 4 9 9 N 1.40175 * 126.34613 * 270.02275 * 8 7 5 10 10 C 1.29399 * 108.13741 * 179.97438 * 9 8 7 11 11 N 1.37361 * 108.82886 * 0.02562 * 10 9 8 12 12 C 1.46505 * 125.82960 * 180.02562 * 11 10 9 13 13 C 1.34812 * 108.33720 * 359.73114 * 11 10 9 14 14 O 1.21816 * 126.30744 * 180.28931 * 13 11 10 15 15 C 1.52997 * 109.47270 * 119.99548 * 2 1 3 16 16 H 1.09004 * 109.49387 * 60.06229 * 15 2 1 17 17 C 1.53041 * 109.49554 * 300.00478 * 15 2 1 18 18 C 1.53047 * 109.53621 * 178.68123 * 17 15 2 19 19 C 1.53187 * 109.31202 * 61.36238 * 18 17 15 20 20 N 1.46930 * 108.77695 * 305.36268 * 19 18 17 21 21 C 1.36932 * 120.63272 * 233.58744 * 20 19 18 22 22 H 1.08002 * 120.00030 * 151.83507 * 21 20 19 23 23 C 1.38812 * 119.99972 * 331.83575 * 21 20 19 24 24 N 1.31618 * 120.00152 * 343.07824 * 23 21 20 25 25 Si 1.86799 * 119.99757 * 163.07480 * 23 21 20 26 26 H 1.48500 * 109.47488 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47135 * 120.00299 * 25 23 21 28 28 H 1.48501 * 109.47458 * 239.99984 * 25 23 21 29 29 C 1.46925 * 118.73252 * 53.61207 * 20 19 18 30 30 H 1.09000 * 109.47222 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47066 * 300.00224 * 1 2 3 32 32 H 1.09003 * 109.46822 * 60.00172 * 1 2 3 33 33 H 0.96995 * 120.00034 * 264.99352 * 4 2 1 34 34 H 1.08997 * 109.47175 * 299.99255 * 7 5 4 35 35 H 1.08995 * 109.47269 * 59.99646 * 7 5 4 36 36 H 1.07994 * 125.58456 * 179.97438 * 10 9 8 37 37 H 1.08995 * 109.46733 * 359.96959 * 12 11 10 38 38 H 1.08995 * 109.47032 * 119.97421 * 12 11 10 39 39 H 1.09003 * 109.46709 * 239.97231 * 12 11 10 40 40 H 1.08994 * 109.45924 * 298.69779 * 17 15 2 41 41 H 1.09002 * 109.46588 * 58.67496 * 17 15 2 42 42 H 1.08996 * 109.49719 * 181.31617 * 18 17 15 43 43 H 1.09007 * 109.49718 * 301.37657 * 18 17 15 44 44 H 1.08994 * 109.59128 * 65.15305 * 19 18 17 45 45 H 1.09005 * 109.58660 * 185.58325 * 19 18 17 46 46 H 0.97000 * 119.99591 * 180.02562 * 24 23 21 47 47 H 1.09011 * 109.58200 * 186.60365 * 29 20 19 48 48 H 1.08993 * 109.58886 * 66.18167 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1472 -0.0183 -2.3571 6 8 1.8584 1.1584 -2.4117 7 6 2.6490 -0.7289 -3.5876 8 7 2.6979 0.2124 -4.7093 9 7 1.6650 0.4738 -5.6201 10 6 2.0857 1.3614 -6.4624 11 7 3.3767 1.7021 -6.1397 12 6 4.2099 2.6755 -6.8499 13 6 3.7437 0.9924 -5.0538 14 8 4.8218 1.0441 -4.4890 15 6 2.0400 -0.7211 1.2493 16 1 1.6778 -1.7492 1.2492 17 6 1.5301 -0.0001 2.4992 18 6 2.0125 -0.7397 3.7492 19 6 3.5441 -0.7367 3.7802 20 7 4.0438 -1.2969 2.5172 21 6 4.9327 -2.3385 2.5193 22 1 4.9564 -3.0298 1.6899 23 6 5.8034 -2.5058 3.5874 24 7 6.0178 -1.5122 4.4235 25 14 6.6707 -4.1411 3.8381 26 1 6.2623 -5.0871 2.7687 27 1 8.1403 -3.9357 3.7819 28 1 6.2994 -4.7005 5.1626 29 6 3.5719 -0.7179 1.2520 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 2.2491 -1.6317 -1.1525 34 1 3.6481 -1.1214 -3.3985 35 1 1.9761 -1.5507 -3.8325 36 1 1.5156 1.7672 -7.2850 37 1 3.6474 3.0952 -7.6839 38 1 4.4974 3.4747 -6.1668 39 1 5.1048 2.1808 -7.2275 40 1 1.9124 1.0205 2.5109 41 1 0.4404 0.0204 2.4875 42 1 1.6296 -0.2391 4.6385 43 1 1.6506 -1.7676 3.7262 44 1 3.9053 0.2853 3.8949 45 1 3.8939 -1.3458 4.6138 46 1 6.6265 -1.6291 5.1697 47 1 3.9400 -1.3147 0.4173 48 1 3.9353 0.3055 1.1605 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661996520.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:11 Heat of formation + Delta-G solvation = 32.350452 kcal Electronic energy + Delta-G solvation = -29935.523981 eV Core-core repulsion = 25835.454340 eV Total energy + Delta-G solvation = -4100.069641 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.57367 -39.84466 -37.93703 -37.35234 -35.58040 -35.06949 -33.06873 -32.15857 -30.96056 -30.43679 -28.68245 -28.28961 -26.99523 -25.18891 -23.69854 -22.81929 -21.94265 -21.61928 -20.63699 -20.35352 -19.11408 -17.87685 -17.57254 -16.74202 -16.42443 -16.31742 -15.95041 -15.62853 -15.07327 -14.80664 -14.61307 -14.33887 -14.03948 -13.70311 -13.44551 -13.38185 -13.15635 -13.12126 -12.84199 -12.66513 -12.44615 -12.33289 -12.21582 -12.06526 -11.77403 -11.49400 -11.09293 -10.95968 -10.69539 -10.64268 -10.40283 -10.38935 -10.17860 -10.13169 -9.89841 -9.78834 -9.52414 -9.40046 -8.91435 -8.70380 -8.44896 -6.64159 -5.76829 -3.19708 1.47687 1.75756 2.53784 2.62530 2.86322 3.31415 3.37770 3.45395 3.47328 4.15980 4.46171 4.49175 4.66553 4.68992 4.91856 4.95718 5.00443 5.15516 5.18013 5.28545 5.39084 5.43743 5.56955 5.59855 5.61352 5.77808 5.82345 5.86747 6.04338 6.09136 6.13879 6.29156 6.32113 6.36894 6.45124 6.57164 6.63647 6.73076 6.83243 6.89410 7.01511 7.40959 7.42192 7.54719 7.69677 7.80751 7.90109 8.24670 8.46836 9.23116 9.86713 10.43950 11.31530 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013832 B = 0.002760 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.820149 B =10142.439469 C =11416.923812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.149 3.851 3 H 0.085 0.915 4 N -0.715 5.715 5 C 0.498 3.502 6 O -0.531 6.531 7 C 0.141 3.859 8 N -0.436 5.436 9 N -0.275 5.275 10 C 0.253 3.747 11 N -0.563 5.563 12 C 0.102 3.898 13 C 0.651 3.349 14 O -0.546 6.546 15 C -0.110 4.110 16 H 0.072 0.928 17 C -0.101 4.101 18 C -0.141 4.141 19 C 0.169 3.831 20 N -0.591 5.591 21 C -0.252 4.252 22 H 0.065 0.935 23 C 0.002 3.998 24 N -0.902 5.902 25 Si 0.901 3.099 26 H -0.278 1.278 27 H -0.291 1.291 28 H -0.289 1.289 29 C 0.155 3.845 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.402 0.598 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.230 0.770 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.055 0.945 41 H 0.050 0.950 42 H 0.049 0.951 43 H 0.053 0.947 44 H 0.017 0.983 45 H 0.086 0.914 46 H 0.253 0.747 47 H 0.051 0.949 48 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.742 4.512 -21.518 24.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.044 3.956 3 H 0.103 0.897 4 N -0.367 5.367 5 C 0.282 3.718 6 O -0.407 6.407 7 C 0.016 3.984 8 N -0.257 5.257 9 N -0.096 5.096 10 C -0.046 4.046 11 N -0.292 5.292 12 C -0.040 4.040 13 C 0.350 3.650 14 O -0.418 6.418 15 C -0.131 4.131 16 H 0.090 0.910 17 C -0.139 4.139 18 C -0.181 4.181 19 C 0.043 3.957 20 N -0.314 5.314 21 C -0.381 4.381 22 H 0.083 0.917 23 C -0.197 4.197 24 N -0.546 5.546 25 Si 0.731 3.269 26 H -0.203 1.203 27 H -0.218 1.218 28 H -0.216 1.216 29 C 0.028 3.972 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.237 0.763 34 H 0.145 0.855 35 H 0.143 0.857 36 H 0.246 0.754 37 H 0.111 0.889 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.035 0.965 45 H 0.104 0.896 46 H 0.063 0.937 47 H 0.069 0.931 48 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -11.789 4.760 -20.671 24.268 hybrid contribution 1.114 -0.684 0.027 1.308 sum -10.675 4.075 -20.644 23.595 Atomic orbital electron populations 1.22189 0.95643 1.01871 1.02118 1.21059 0.93445 0.97535 0.83511 0.89732 1.46006 1.66982 1.14256 1.09415 1.20804 0.78257 0.87870 0.84855 1.90713 1.49500 1.15725 1.84780 1.21259 1.05626 0.89855 0.81667 1.48180 1.10825 1.39681 1.26970 1.76944 1.12828 1.17932 1.01848 1.25897 0.84324 0.94783 0.99601 1.45867 1.14504 1.40046 1.28775 1.21795 0.94793 0.90777 0.96632 1.16662 0.85212 0.81280 0.81805 1.91127 1.22165 1.70032 1.58496 1.21968 0.99566 0.99178 0.92377 0.90955 1.21446 0.98705 0.99056 0.94709 1.22174 1.00866 0.99318 0.95707 1.20791 0.87441 0.97229 0.90220 1.44049 1.49738 1.38088 0.99484 1.19195 1.10983 1.02029 1.05928 0.91715 1.25054 0.97240 0.97472 0.99927 1.70051 1.37799 1.29288 1.17458 0.86240 0.79124 0.83777 0.77716 1.20270 1.21757 1.21601 1.20862 0.89828 0.96413 0.90058 0.92606 0.91307 0.92758 0.76306 0.85536 0.85734 0.75356 0.88905 0.90439 0.90454 0.92640 0.93133 0.93266 0.92770 0.96534 0.89604 0.93706 0.93058 0.96583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.13 37.16 0.34 -1.70 16 2 C 0.15 2.19 2.16 -67.93 -0.15 2.04 16 3 H 0.08 1.46 7.58 -51.93 -0.39 1.06 16 4 N -0.71 -9.39 4.48 -53.81 -0.24 -9.63 16 5 C 0.50 7.24 7.86 -10.99 -0.09 7.15 16 6 O -0.53 -9.92 16.09 5.55 0.09 -9.83 16 7 C 0.14 1.62 6.87 -5.19 -0.04 1.59 16 8 N -0.44 -5.79 3.11 -66.31 -0.21 -6.00 16 9 N -0.27 -3.05 12.53 29.87 0.37 -2.68 16 10 C 0.25 1.90 12.61 -89.12 -1.12 0.77 16 11 N -0.56 -5.48 3.14 -130.11 -0.41 -5.89 16 12 C 0.10 0.57 11.08 59.85 0.66 1.23 16 13 C 0.65 9.53 8.61 -86.74 -0.75 8.78 16 14 O -0.55 -10.08 17.77 5.08 0.09 -9.99 16 15 C -0.11 -1.82 1.97 -90.51 -0.18 -2.00 16 16 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 17 C -0.10 -1.68 4.85 -26.69 -0.13 -1.81 16 18 C -0.14 -2.68 6.08 -26.61 -0.16 -2.84 16 19 C 0.17 4.06 5.30 -3.71 -0.02 4.04 16 20 N -0.59 -14.78 2.99 -172.32 -0.52 -15.30 16 21 C -0.25 -6.88 9.58 -15.06 -0.14 -7.03 16 22 H 0.07 1.72 7.89 -52.49 -0.41 1.31 16 23 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 24 N -0.90 -26.47 11.20 55.49 0.62 -25.85 16 25 Si 0.90 21.73 29.59 -169.99 -5.03 16.70 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 28 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 29 C 0.16 3.24 5.56 -3.72 -0.02 3.22 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.83 6.40 -51.93 -0.33 0.50 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.40 4.36 8.43 -40.82 -0.34 4.01 16 34 H 0.13 1.33 8.11 -51.93 -0.42 0.91 16 35 H 0.12 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.23 0.34 8.06 -52.49 -0.42 -0.08 16 37 H 0.09 0.13 8.07 -51.93 -0.42 -0.29 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.05 0.72 6.36 -51.93 -0.33 0.39 16 42 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.05 1.03 8.14 -51.92 -0.42 0.61 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.09 2.31 6.06 -51.93 -0.31 1.99 16 46 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 47 H 0.05 1.03 7.45 -51.92 -0.39 0.65 16 48 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 391.07 15.07 5.89 5.89 Total: -1.00 -39.04 391.07 -8.77 -47.81 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -7.56 Total: 1.34 kcal Atomic # 6 Polarization: 15.29 SS G_CDS: -1.88 Total: 13.41 kcal Atomic # 7 Polarization: -64.97 SS G_CDS: -0.38 Total: -65.35 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: 0.18 Total: -19.82 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -39.04 -8.77 -47.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661996520.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.159 kcal (2) G-P(sol) polarization free energy of solvation -39.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds