Wall clock time and date at job start Tue Mar 31 2020 19:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.47352 * 2 1 4 4 N 1.46500 * 109.47344 * 239.99789 * 2 1 3 5 5 C 1.34776 * 120.00055 * 85.00032 * 4 2 1 6 6 O 1.21280 * 119.99875 * 0.02562 * 5 4 2 7 7 C 1.50692 * 120.00137 * 180.02562 * 5 4 2 8 8 N 1.46504 * 109.47074 * 179.97438 * 7 5 4 9 9 N 1.40165 * 126.35099 * 269.68853 * 8 7 5 10 10 C 1.29405 * 108.14091 * 179.81705 * 9 8 7 11 11 N 1.37364 * 108.82713 * 0.44818 * 10 9 8 12 12 C 1.46496 * 125.83053 * 179.74884 * 11 10 9 13 13 C 1.34811 * 108.33267 * 359.70944 * 11 10 9 14 14 O 1.21817 * 126.29859 * 179.97438 * 13 11 10 15 15 C 1.53005 * 109.47054 * 119.99996 * 2 1 3 16 16 H 1.09001 * 109.49784 * 180.02562 * 15 2 1 17 17 C 1.53041 * 109.49781 * 300.16076 * 15 2 1 18 18 C 1.53349 * 109.61030 * 181.32348 * 17 15 2 19 19 C 1.53188 * 109.15049 * 298.71587 * 18 17 15 20 20 N 1.46930 * 108.89270 * 54.57248 * 19 18 17 21 21 C 1.36936 * 120.62773 * 126.34511 * 20 19 18 22 22 H 1.08005 * 120.00145 * 332.53466 * 21 20 19 23 23 C 1.38815 * 120.00377 * 152.53442 * 21 20 19 24 24 N 1.31613 * 120.00413 * 159.33782 * 23 21 20 25 25 Si 1.86806 * 119.99546 * 339.33668 * 23 21 20 26 26 H 1.48501 * 109.46946 * 92.97398 * 25 23 21 27 27 H 1.48496 * 109.46962 * 212.97868 * 25 23 21 28 28 H 1.48503 * 109.47163 * 332.97631 * 25 23 21 29 29 C 1.46921 * 118.74115 * 306.32133 * 20 19 18 30 30 H 1.08997 * 109.47348 * 299.99982 * 1 2 3 31 31 H 1.09000 * 109.47350 * 60.00111 * 1 2 3 32 32 H 1.09004 * 109.47352 * 179.97438 * 1 2 3 33 33 H 0.96997 * 119.99868 * 265.00486 * 4 2 1 34 34 H 1.09002 * 109.47241 * 300.00101 * 7 5 4 35 35 H 1.09004 * 109.47426 * 60.00214 * 7 5 4 36 36 H 1.07998 * 125.58462 * 180.13929 * 10 9 8 37 37 H 1.09000 * 109.46905 * 269.95497 * 12 11 10 38 38 H 1.09000 * 109.47519 * 29.95904 * 12 11 10 39 39 H 1.09002 * 109.46866 * 149.95613 * 12 11 10 40 40 H 1.09001 * 109.46405 * 301.34013 * 17 15 2 41 41 H 1.09002 * 109.45730 * 61.30804 * 17 15 2 42 42 H 1.09001 * 109.68593 * 178.74846 * 18 17 15 43 43 H 1.09001 * 109.46936 * 58.54958 * 18 17 15 44 44 H 1.09003 * 109.58688 * 294.71925 * 19 18 17 45 45 H 1.08996 * 109.58882 * 174.43387 * 19 18 17 46 46 H 0.97004 * 119.99822 * 180.02562 * 24 23 21 47 47 H 1.09000 * 109.58922 * 173.39710 * 29 20 19 48 48 H 1.09001 * 109.58839 * 293.81911 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8590 1.1585 -2.4115 7 6 2.6489 -0.7289 -3.5876 8 7 2.6977 0.2124 -4.7092 9 7 1.6671 0.4690 -5.6239 10 6 2.0858 1.3609 -6.4629 11 7 3.3766 1.7021 -6.1397 12 6 4.2097 2.6756 -6.8498 13 6 3.7453 0.9887 -5.0568 14 8 4.8256 1.0359 -4.4958 15 6 2.0399 -0.7213 1.2493 16 1 3.1299 -0.7211 1.2500 17 6 1.5268 -0.0026 2.4993 18 6 2.0635 -0.7040 3.7529 19 6 1.5532 -2.1481 3.7783 20 7 1.9179 -2.8038 2.5150 21 6 2.6063 -3.9876 2.5169 22 1 3.2583 -4.2319 3.3426 23 6 2.4663 -4.8737 1.4575 24 7 3.3879 -5.7871 1.2373 25 14 0.9697 -4.7695 0.3445 26 1 1.2810 -3.9077 -0.8242 27 1 0.6074 -6.1304 -0.1264 28 1 -0.1691 -4.1874 1.0993 29 6 1.5296 -2.1657 1.2499 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 2.2489 -1.6318 -1.1525 34 1 3.6480 -1.1214 -3.3985 35 1 1.9760 -1.5507 -3.8325 36 1 1.5158 1.7664 -7.2856 37 1 4.7677 2.1699 -7.6378 38 1 3.5748 3.4445 -7.2902 39 1 4.9064 3.1368 -6.1498 40 1 1.8681 1.0325 2.4889 41 1 0.4371 -0.0256 2.5097 42 1 1.7169 -0.1799 4.6436 43 1 3.1533 -0.7036 3.7309 44 1 0.4690 -2.1506 3.8914 45 1 2.0088 -2.6821 4.6121 46 1 3.2901 -6.4060 0.4968 47 1 1.9718 -2.7098 0.4153 48 1 0.4436 -2.1696 1.1569 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661996521.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:13 Heat of formation + Delta-G solvation = 39.984028 kcal Electronic energy + Delta-G solvation = -30419.214447 eV Core-core repulsion = 26319.475823 eV Total energy + Delta-G solvation = -4099.738624 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 2.95 seconds Orbital eigenvalues (eV) -42.57352 -39.93055 -38.28020 -37.36315 -35.60566 -35.08338 -33.17306 -32.24619 -31.36946 -30.63023 -28.79002 -28.23219 -26.98562 -25.33388 -24.22159 -23.04537 -22.48738 -21.59868 -20.61131 -20.19630 -19.03384 -17.87757 -17.64510 -16.84093 -16.42241 -16.36128 -15.99358 -15.74808 -15.31090 -14.98511 -14.60947 -14.47948 -14.17610 -13.97862 -13.64929 -13.51934 -13.27718 -13.09832 -13.08635 -12.75837 -12.64835 -12.29365 -12.15757 -12.12167 -12.02466 -11.79659 -11.43734 -11.03309 -10.76295 -10.69135 -10.57131 -10.47925 -10.41260 -10.13128 -9.87382 -9.71372 -9.69732 -9.49809 -8.94983 -8.70867 -8.66043 -6.99891 -5.99535 -3.34865 1.48093 1.77382 2.52637 2.62203 2.86268 3.16280 3.34121 3.42615 3.44815 4.19209 4.45255 4.47657 4.66758 4.70897 4.82262 4.87727 5.03047 5.10326 5.15436 5.17405 5.22208 5.24612 5.40832 5.52280 5.56601 5.60338 5.67667 5.82121 5.87358 5.97474 6.03898 6.06477 6.16132 6.26897 6.29765 6.33315 6.40553 6.51507 6.56710 6.61806 6.69438 6.73644 6.96846 7.41832 7.55516 7.88982 7.92045 8.23740 8.28990 8.90028 9.67114 10.05934 11.16491 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014901 B = 0.003169 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.661706 B = 8832.322925 C = 9677.083461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.150 3.850 3 H 0.084 0.916 4 N -0.718 5.718 5 C 0.500 3.500 6 O -0.534 6.534 7 C 0.139 3.861 8 N -0.435 5.435 9 N -0.272 5.272 10 C 0.253 3.747 11 N -0.562 5.562 12 C 0.100 3.900 13 C 0.652 3.348 14 O -0.550 6.550 15 C -0.114 4.114 16 H 0.080 0.920 17 C -0.102 4.102 18 C -0.135 4.135 19 C 0.147 3.853 20 N -0.605 5.605 21 C -0.257 4.257 22 H 0.086 0.914 23 C 0.021 3.979 24 N -0.907 5.907 25 Si 0.882 3.118 26 H -0.291 1.291 27 H -0.303 1.303 28 H -0.271 1.271 29 C 0.132 3.868 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.405 0.595 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.231 0.769 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.053 0.947 41 H 0.061 0.939 42 H 0.056 0.944 43 H 0.062 0.938 44 H 0.022 0.978 45 H 0.062 0.938 46 H 0.263 0.737 47 H 0.066 0.934 48 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.971 15.729 -14.618 21.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.045 3.955 3 H 0.103 0.897 4 N -0.372 5.372 5 C 0.284 3.716 6 O -0.410 6.410 7 C 0.014 3.986 8 N -0.255 5.255 9 N -0.093 5.093 10 C -0.047 4.047 11 N -0.292 5.292 12 C -0.042 4.042 13 C 0.351 3.649 14 O -0.423 6.423 15 C -0.135 4.135 16 H 0.098 0.902 17 C -0.140 4.140 18 C -0.174 4.174 19 C 0.021 3.979 20 N -0.328 5.328 21 C -0.386 4.386 22 H 0.103 0.897 23 C -0.177 4.177 24 N -0.550 5.550 25 Si 0.712 3.288 26 H -0.219 1.219 27 H -0.231 1.231 28 H -0.196 1.196 29 C 0.006 3.994 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.242 0.758 34 H 0.146 0.854 35 H 0.144 0.856 36 H 0.247 0.753 37 H 0.091 0.909 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.040 0.960 45 H 0.080 0.920 46 H 0.073 0.927 47 H 0.084 0.916 48 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -4.097 15.788 -13.978 21.481 hybrid contribution -0.195 -0.044 -0.973 0.993 sum -4.292 15.744 -14.950 22.132 Atomic orbital electron populations 1.22273 0.95503 1.02520 1.02109 1.21024 0.94066 0.96859 0.83513 0.89748 1.46184 1.66827 1.14671 1.09476 1.20789 0.78175 0.87789 0.84843 1.90691 1.49791 1.15679 1.84829 1.21284 1.05822 0.89915 0.81625 1.48170 1.10855 1.39753 1.26689 1.76977 1.12932 1.17655 1.01730 1.25893 0.84413 0.94712 0.99656 1.45847 1.14465 1.39935 1.28926 1.21806 0.94964 0.90410 0.96992 1.16651 0.85138 0.81321 0.81776 1.91099 1.21988 1.70275 1.58955 1.21981 1.01478 0.97452 0.92622 0.90200 1.21489 1.00323 0.97935 0.94272 1.22053 1.01155 0.97881 0.96359 1.20950 0.96563 0.91195 0.89197 1.44326 1.66006 1.23122 0.99381 1.18956 1.18686 0.92868 1.08055 0.89657 1.25297 0.97814 0.96322 0.98303 1.69838 1.32728 1.21519 1.30904 0.86998 0.85911 0.75674 0.80186 1.21917 1.23093 1.19594 1.21435 0.97046 0.90733 0.90156 0.91241 0.92623 0.91952 0.75827 0.85433 0.85556 0.75309 0.90879 0.89360 0.89432 0.92864 0.92029 0.92560 0.91969 0.96012 0.91960 0.92749 0.91554 0.95075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.44 8.78 37.15 0.33 -2.11 16 2 C 0.15 2.36 2.41 -67.93 -0.16 2.20 16 3 H 0.08 1.38 7.58 -51.93 -0.39 0.99 16 4 N -0.72 -11.30 5.00 -53.81 -0.27 -11.57 16 5 C 0.50 8.05 7.86 -10.99 -0.09 7.97 16 6 O -0.53 -10.25 16.09 5.56 0.09 -10.16 16 7 C 0.14 1.87 6.87 -5.20 -0.04 1.83 16 8 N -0.43 -6.24 3.11 -66.31 -0.21 -6.44 16 9 N -0.27 -3.32 12.53 29.87 0.37 -2.94 16 10 C 0.25 2.06 12.66 -89.11 -1.13 0.93 16 11 N -0.56 -5.67 3.14 -130.11 -0.41 -6.08 16 12 C 0.10 0.57 11.05 59.84 0.66 1.23 16 13 C 0.65 9.79 8.60 -86.74 -0.75 9.04 16 14 O -0.55 -10.11 17.71 5.08 0.09 -10.02 16 15 C -0.11 -1.95 2.33 -90.50 -0.21 -2.16 16 16 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 17 C -0.10 -1.54 4.77 -26.53 -0.13 -1.67 16 18 C -0.14 -2.15 6.11 -26.45 -0.16 -2.31 16 19 C 0.15 2.81 6.50 -3.71 -0.02 2.78 16 20 N -0.61 -13.84 2.77 -172.32 -0.48 -14.32 16 21 C -0.26 -6.98 10.03 -15.06 -0.15 -7.13 16 22 H 0.09 2.49 8.06 -52.48 -0.42 2.07 16 23 C 0.02 0.60 5.23 -17.43 -0.09 0.51 16 24 N -0.91 -26.99 13.97 55.49 0.78 -26.21 16 25 Si 0.88 21.30 24.35 -169.99 -4.14 17.16 16 26 H -0.29 -6.36 6.62 56.52 0.37 -5.98 16 27 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 28 H -0.27 -6.53 6.64 56.52 0.38 -6.16 16 29 C 0.13 2.68 2.98 -3.71 -0.01 2.67 16 30 H 0.07 0.91 6.46 -51.93 -0.34 0.58 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.96 6.32 -51.93 -0.33 0.63 16 33 H 0.41 6.32 6.97 -40.82 -0.28 6.04 16 34 H 0.13 1.57 8.11 -51.93 -0.42 1.15 16 35 H 0.13 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.23 0.49 8.06 -52.49 -0.42 0.07 16 37 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 38 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 39 H 0.09 0.62 8.08 -51.93 -0.42 0.20 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.89 6.50 -51.93 -0.34 0.55 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 44 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 46 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 47 H 0.07 1.44 3.09 -51.93 -0.16 1.28 16 48 H 0.03 0.64 5.11 -51.93 -0.27 0.37 16 LS Contribution 379.10 15.07 5.71 5.71 Total: -1.00 -37.69 379.10 -7.60 -45.29 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -7.20 Total: 5.79 kcal Atomic # 6 Polarization: 15.73 SS G_CDS: -1.95 Total: 13.78 kcal Atomic # 7 Polarization: -67.35 SS G_CDS: -0.21 Total: -67.56 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: 0.18 Total: -20.18 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.14 Total: 17.16 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.69 -7.60 -45.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661996521.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.278 kcal (2) G-P(sol) polarization free energy of solvation -37.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.95 seconds