Wall clock time and date at job start Tue Mar 31 2020 19:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.47352 * 2 1 4 4 N 1.46500 * 109.47344 * 239.99789 * 2 1 3 5 5 C 1.34776 * 120.00055 * 85.00032 * 4 2 1 6 6 O 1.21280 * 119.99875 * 0.02562 * 5 4 2 7 7 C 1.50692 * 120.00137 * 180.02562 * 5 4 2 8 8 N 1.46504 * 109.47074 * 179.97438 * 7 5 4 9 9 N 1.40165 * 126.35099 * 269.68853 * 8 7 5 10 10 C 1.29405 * 108.14091 * 179.81705 * 9 8 7 11 11 N 1.37364 * 108.82713 * 0.44818 * 10 9 8 12 12 C 1.46496 * 125.83053 * 179.74884 * 11 10 9 13 13 C 1.34811 * 108.33267 * 359.70944 * 11 10 9 14 14 O 1.21817 * 126.29859 * 179.97438 * 13 11 10 15 15 C 1.53005 * 109.47054 * 119.99996 * 2 1 3 16 16 H 1.09001 * 109.49784 * 180.02562 * 15 2 1 17 17 C 1.53041 * 109.49781 * 300.16076 * 15 2 1 18 18 C 1.53349 * 109.61030 * 181.32348 * 17 15 2 19 19 C 1.53188 * 109.15049 * 298.71587 * 18 17 15 20 20 N 1.46930 * 108.89270 * 54.57248 * 19 18 17 21 21 C 1.36936 * 120.62773 * 126.34511 * 20 19 18 22 22 H 1.08005 * 120.00145 * 332.53466 * 21 20 19 23 23 C 1.38815 * 120.00377 * 152.53442 * 21 20 19 24 24 N 1.31613 * 120.00413 * 159.33782 * 23 21 20 25 25 Si 1.86806 * 119.99546 * 339.33668 * 23 21 20 26 26 H 1.48501 * 109.46946 * 92.97398 * 25 23 21 27 27 H 1.48496 * 109.46962 * 212.97868 * 25 23 21 28 28 H 1.48503 * 109.47163 * 332.97631 * 25 23 21 29 29 C 1.46921 * 118.74115 * 306.32133 * 20 19 18 30 30 H 1.08997 * 109.47348 * 299.99982 * 1 2 3 31 31 H 1.09000 * 109.47350 * 60.00111 * 1 2 3 32 32 H 1.09004 * 109.47352 * 179.97438 * 1 2 3 33 33 H 0.96997 * 119.99868 * 265.00486 * 4 2 1 34 34 H 1.09002 * 109.47241 * 300.00101 * 7 5 4 35 35 H 1.09004 * 109.47426 * 60.00214 * 7 5 4 36 36 H 1.07998 * 125.58462 * 180.13929 * 10 9 8 37 37 H 1.09000 * 109.46905 * 269.95497 * 12 11 10 38 38 H 1.09000 * 109.47519 * 29.95904 * 12 11 10 39 39 H 1.09002 * 109.46866 * 149.95613 * 12 11 10 40 40 H 1.09001 * 109.46405 * 301.34013 * 17 15 2 41 41 H 1.09002 * 109.45730 * 61.30804 * 17 15 2 42 42 H 1.09001 * 109.68593 * 178.74846 * 18 17 15 43 43 H 1.09001 * 109.46936 * 58.54958 * 18 17 15 44 44 H 1.09003 * 109.58688 * 294.71925 * 19 18 17 45 45 H 1.08996 * 109.58882 * 174.43387 * 19 18 17 46 46 H 0.97004 * 119.99822 * 180.02562 * 24 23 21 47 47 H 1.09000 * 109.58922 * 173.39710 * 29 20 19 48 48 H 1.09001 * 109.58839 * 293.81911 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8590 1.1585 -2.4115 7 6 2.6489 -0.7289 -3.5876 8 7 2.6977 0.2124 -4.7092 9 7 1.6671 0.4690 -5.6239 10 6 2.0858 1.3609 -6.4629 11 7 3.3766 1.7021 -6.1397 12 6 4.2097 2.6756 -6.8498 13 6 3.7453 0.9887 -5.0568 14 8 4.8256 1.0359 -4.4958 15 6 2.0399 -0.7213 1.2493 16 1 3.1299 -0.7211 1.2500 17 6 1.5268 -0.0026 2.4993 18 6 2.0635 -0.7040 3.7529 19 6 1.5532 -2.1481 3.7783 20 7 1.9179 -2.8038 2.5150 21 6 2.6063 -3.9876 2.5169 22 1 3.2583 -4.2319 3.3426 23 6 2.4663 -4.8737 1.4575 24 7 3.3879 -5.7871 1.2373 25 14 0.9697 -4.7695 0.3445 26 1 1.2810 -3.9077 -0.8242 27 1 0.6074 -6.1304 -0.1264 28 1 -0.1691 -4.1874 1.0993 29 6 1.5296 -2.1657 1.2499 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 2.2489 -1.6318 -1.1525 34 1 3.6480 -1.1214 -3.3985 35 1 1.9760 -1.5507 -3.8325 36 1 1.5158 1.7664 -7.2856 37 1 4.7677 2.1699 -7.6378 38 1 3.5748 3.4445 -7.2902 39 1 4.9064 3.1368 -6.1498 40 1 1.8681 1.0325 2.4889 41 1 0.4371 -0.0256 2.5097 42 1 1.7169 -0.1799 4.6436 43 1 3.1533 -0.7036 3.7309 44 1 0.4690 -2.1506 3.8914 45 1 2.0088 -2.6821 4.6121 46 1 3.2901 -6.4060 0.4968 47 1 1.9718 -2.7098 0.4153 48 1 0.4436 -2.1696 1.1569 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661996521.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:12 Heat of formation + Delta-G solvation = 12.984379 kcal Electronic energy + Delta-G solvation = -30420.385239 eV Core-core repulsion = 26319.475823 eV Total energy + Delta-G solvation = -4100.909417 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.45571 -41.22565 -39.71321 -38.46642 -36.84451 -36.17815 -34.86935 -33.43266 -32.74257 -32.20472 -30.02267 -29.23481 -27.72553 -27.15591 -25.52758 -24.30925 -23.69759 -22.62825 -21.94849 -21.46419 -20.50939 -18.95953 -18.75149 -18.54276 -17.54377 -17.44098 -17.12242 -16.96437 -16.59770 -16.22298 -16.00216 -15.62800 -15.47687 -15.31176 -15.08144 -14.90995 -14.56707 -14.36191 -14.02558 -13.93728 -13.63318 -13.60817 -13.50388 -13.32005 -13.29413 -12.94626 -12.85876 -12.58543 -12.48994 -12.10229 -11.98553 -11.66621 -11.59147 -11.53129 -11.46976 -11.29224 -11.22735 -10.80226 -10.62804 -10.23286 -9.70225 -8.88820 -8.14133 -5.46200 0.60086 1.05906 1.25432 1.38969 1.44459 1.50679 1.52568 2.02799 2.29807 2.42113 3.05142 3.32630 3.40456 3.53148 3.77922 3.85309 3.95289 4.03061 4.05412 4.06976 4.24500 4.30592 4.33468 4.36524 4.50235 4.51214 4.55122 4.67562 4.75032 4.77112 4.82280 4.85629 4.92944 4.96389 4.99509 5.08621 5.12191 5.21655 5.25049 5.35693 5.42237 5.59141 5.65107 5.88773 6.14937 6.30408 6.56965 6.87212 6.94040 6.99747 7.64481 8.05125 9.05886 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014901 B = 0.003169 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.661706 B = 8832.322925 C = 9677.083461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.154 3.846 3 H 0.081 0.919 4 N -0.718 5.718 5 C 0.501 3.499 6 O -0.567 6.567 7 C 0.136 3.864 8 N -0.445 5.445 9 N -0.312 5.312 10 C 0.280 3.720 11 N -0.558 5.558 12 C 0.092 3.908 13 C 0.630 3.370 14 O -0.601 6.601 15 C -0.103 4.103 16 H 0.060 0.940 17 C -0.100 4.100 18 C -0.126 4.126 19 C 0.139 3.861 20 N -0.620 5.620 21 C -0.251 4.251 22 H 0.047 0.953 23 C -0.035 4.035 24 N -0.957 5.957 25 Si 0.942 3.058 26 H -0.256 1.256 27 H -0.314 1.314 28 H -0.265 1.265 29 C 0.131 3.869 30 H 0.089 0.911 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.406 0.594 34 H 0.131 0.869 35 H 0.152 0.848 36 H 0.292 0.708 37 H 0.090 0.910 38 H 0.133 0.867 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.090 0.910 43 H 0.046 0.954 44 H 0.037 0.963 45 H 0.050 0.950 46 H 0.262 0.738 47 H 0.049 0.951 48 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.499 18.340 -16.610 25.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.049 3.951 3 H 0.099 0.901 4 N -0.371 5.371 5 C 0.287 3.713 6 O -0.446 6.446 7 C 0.010 3.990 8 N -0.264 5.264 9 N -0.133 5.133 10 C -0.017 4.017 11 N -0.285 5.285 12 C -0.048 4.048 13 C 0.329 3.671 14 O -0.478 6.478 15 C -0.124 4.124 16 H 0.078 0.922 17 C -0.138 4.138 18 C -0.165 4.165 19 C 0.014 3.986 20 N -0.344 5.344 21 C -0.380 4.380 22 H 0.064 0.936 23 C -0.230 4.230 24 N -0.603 5.603 25 Si 0.771 3.229 26 H -0.182 1.182 27 H -0.244 1.244 28 H -0.189 1.189 29 C 0.006 3.994 30 H 0.108 0.892 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.242 0.758 34 H 0.149 0.851 35 H 0.169 0.831 36 H 0.307 0.693 37 H 0.108 0.892 38 H 0.151 0.849 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.108 0.892 43 H 0.065 0.935 44 H 0.055 0.945 45 H 0.069 0.931 46 H 0.071 0.929 47 H 0.067 0.933 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -6.660 18.459 -15.994 25.316 hybrid contribution 0.645 -0.788 -0.325 1.069 sum -6.015 17.671 -16.319 24.794 Atomic orbital electron populations 1.22215 0.94132 1.02367 1.02930 1.20987 0.95001 0.96288 0.82830 0.90141 1.46237 1.66602 1.14656 1.09596 1.21205 0.77310 0.87394 0.85423 1.90660 1.51409 1.17100 1.85402 1.21379 1.06492 0.90310 0.80779 1.48290 1.11351 1.39683 1.27033 1.76994 1.12935 1.20458 1.02935 1.27167 0.83278 0.92159 0.99125 1.46115 1.15488 1.39383 1.27542 1.22184 0.95458 0.90674 0.96472 1.17083 0.84869 0.82134 0.83022 1.91037 1.23902 1.71953 1.60876 1.21812 1.00238 0.95743 0.94604 0.92171 1.21523 1.01236 0.98665 0.92341 1.21962 1.00180 0.95899 0.98473 1.21158 0.97405 0.92806 0.87219 1.44458 1.66008 1.22274 1.01700 1.18857 1.17899 0.94660 1.06628 0.93556 1.25924 1.00304 0.96284 1.00485 1.69981 1.34779 1.23182 1.32361 0.85988 0.81830 0.75539 0.79586 1.18207 1.24369 1.18944 1.21464 0.97303 0.92228 0.88369 0.89247 0.93026 0.92440 0.75762 0.85085 0.83078 0.69252 0.89173 0.84910 0.91431 0.90527 0.90399 0.89161 0.93521 0.94479 0.93140 0.92935 0.93270 0.94116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.21 8.78 71.98 0.63 -3.58 16 2 C 0.15 4.57 2.41 44.99 0.11 4.68 16 3 H 0.08 2.51 7.58 -2.39 -0.02 2.49 16 4 N -0.72 -21.94 5.00 -442.54 -2.21 -24.15 16 5 C 0.50 15.91 7.86 87.65 0.69 16.60 16 6 O -0.57 -21.58 16.09 -3.03 -0.05 -21.63 16 7 C 0.14 3.61 6.87 85.63 0.59 4.20 16 8 N -0.45 -12.50 3.11 -481.77 -1.50 -14.00 16 9 N -0.31 -6.97 12.53 -59.41 -0.74 -7.72 16 10 C 0.28 3.60 12.66 179.82 2.28 5.88 16 11 N -0.56 -10.10 3.14 -683.69 -2.15 -12.25 16 12 C 0.09 0.80 11.05 127.77 1.41 2.22 16 13 C 0.63 18.86 8.60 178.99 1.54 20.40 16 14 O -0.60 -22.86 17.71 -4.72 -0.08 -22.94 16 15 C -0.10 -3.34 2.33 -10.71 -0.03 -3.37 16 16 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 17 C -0.10 -2.69 4.77 30.73 0.15 -2.55 16 18 C -0.13 -3.72 6.11 30.77 0.19 -3.53 16 19 C 0.14 5.15 6.50 86.36 0.56 5.71 16 20 N -0.62 -28.22 2.77 -699.10 -1.94 -30.15 16 21 C -0.25 -14.02 10.03 84.03 0.84 -13.18 16 22 H 0.05 2.88 8.06 -2.91 -0.02 2.85 16 23 C -0.04 -2.01 5.23 84.86 0.44 -1.57 16 24 N -0.96 -59.09 13.97 21.65 0.30 -58.79 16 25 Si 0.94 44.06 24.35 68.60 1.67 45.73 16 26 H -0.26 -10.41 6.62 99.48 0.66 -9.75 16 27 H -0.31 -15.26 7.11 99.48 0.71 -14.55 16 28 H -0.26 -12.01 6.64 99.48 0.66 -11.35 16 29 C 0.13 5.15 2.98 86.36 0.26 5.41 16 30 H 0.09 2.00 6.46 -2.39 -0.02 1.99 16 31 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.06 1.59 6.32 -2.39 -0.02 1.57 16 33 H 0.41 12.31 6.97 -92.71 -0.65 11.67 16 34 H 0.13 3.31 8.11 -2.39 -0.02 3.29 16 35 H 0.15 3.13 8.14 -2.39 -0.02 3.11 16 36 H 0.29 -0.49 8.06 -2.91 -0.02 -0.51 16 37 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.13 -0.02 8.14 -2.39 -0.02 -0.04 16 39 H 0.07 0.90 8.08 -2.39 -0.02 0.88 16 40 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.08 1.90 6.50 -2.39 -0.02 1.88 16 42 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.05 1.95 7.93 -2.39 -0.02 1.93 16 46 H 0.26 15.31 8.31 -92.70 -0.77 14.54 16 47 H 0.05 2.09 3.09 -2.39 -0.01 2.08 16 48 H 0.04 1.55 5.11 -2.39 -0.01 1.54 16 Total: -1.00 -87.53 379.10 3.21 -84.33 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: 0.25 Total: 24.26 kcal Atomic # 6 Polarization: 27.65 SS G_CDS: 9.66 Total: 37.31 kcal Atomic # 7 Polarization: -138.81 SS G_CDS: -8.24 Total: -147.05 kcal Atomic # 8 Polarization: -44.44 SS G_CDS: -0.13 Total: -44.57 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.67 Total: 45.73 kcal Total: -87.53 3.21 -84.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661996521.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.310 kcal (2) G-P(sol) polarization free energy of solvation -87.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds