Wall clock time and date at job start Tue Mar 31 2020 19:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47070 * 2 1 4 4 N 1.46502 * 109.46656 * 119.99917 * 2 1 3 5 5 C 1.34776 * 119.99930 * 274.99930 * 4 2 1 6 6 O 1.21285 * 119.99826 * 0.02562 * 5 4 2 7 7 C 1.50699 * 120.00058 * 180.02562 * 5 4 2 8 8 N 1.46503 * 109.47377 * 180.02562 * 7 5 4 9 9 N 1.40172 * 126.34946 * 270.02568 * 8 7 5 10 10 C 1.29392 * 108.14351 * 179.97438 * 9 8 7 11 11 N 1.37365 * 108.82815 * 359.97438 * 10 9 8 12 12 C 1.46501 * 125.83451 * 180.02562 * 11 10 9 13 13 C 1.34816 * 108.33245 * 359.73362 * 11 10 9 14 14 O 1.21815 * 126.30332 * 180.28177 * 13 11 10 15 15 C 1.53000 * 109.47206 * 239.99724 * 2 1 3 16 16 H 1.08999 * 109.52170 * 184.92075 * 15 2 1 17 17 C 1.53042 * 109.49466 * 64.83837 * 15 2 1 18 18 C 1.53040 * 109.53399 * 178.68321 * 17 15 2 19 19 C 1.52757 * 109.38837 * 61.23930 * 18 17 15 20 20 N 1.46933 * 109.00863 * 305.59166 * 19 18 17 21 21 C 1.36935 * 120.62781 * 233.58305 * 20 19 18 22 22 H 1.07995 * 119.99873 * 152.09995 * 21 20 19 23 23 C 1.38811 * 119.99806 * 332.09376 * 21 20 19 24 24 N 1.31615 * 120.00651 * 335.28172 * 23 21 20 25 25 Si 1.86803 * 119.99607 * 155.00135 * 23 21 20 26 26 H 1.48496 * 109.47436 * 60.00138 * 25 23 21 27 27 H 1.48503 * 109.47168 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47355 * 300.00110 * 25 23 21 29 29 C 1.46923 * 118.73785 * 53.30252 * 20 19 18 30 30 H 1.09002 * 109.47338 * 300.00273 * 1 2 3 31 31 H 1.08998 * 109.47314 * 60.00340 * 1 2 3 32 32 H 1.09004 * 109.47402 * 179.97438 * 1 2 3 33 33 H 0.96996 * 120.00312 * 95.00159 * 4 2 1 34 34 H 1.08998 * 109.46986 * 300.00163 * 7 5 4 35 35 H 1.09003 * 109.47316 * 59.99843 * 7 5 4 36 36 H 1.07998 * 125.59090 * 179.97438 * 10 9 8 37 37 H 1.08998 * 109.46763 * 359.97039 * 12 11 10 38 38 H 1.08994 * 109.47565 * 119.97352 * 12 11 10 39 39 H 1.09004 * 109.46904 * 239.97761 * 12 11 10 40 40 H 1.08990 * 109.46013 * 298.70087 * 17 15 2 41 41 H 1.09000 * 109.45871 * 58.66279 * 17 15 2 42 42 H 1.09003 * 109.50007 * 181.32125 * 18 17 15 43 43 H 1.09008 * 109.49676 * 301.38120 * 18 17 15 44 44 H 1.08994 * 109.51278 * 185.70471 * 19 18 17 45 45 H 1.09000 * 109.43033 * 65.42089 * 19 18 17 46 46 H 0.97009 * 119.99439 * 353.96783 * 24 23 21 47 47 H 1.09006 * 109.58528 * 66.43409 * 29 20 19 48 48 H 1.09001 * 109.58720 * 186.85700 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.1469 -0.0182 2.3572 6 8 1.8581 1.1584 2.4117 7 6 2.6497 -0.7285 3.5875 8 7 2.6983 0.2127 4.7092 9 7 3.7858 1.0203 5.0696 10 6 3.4468 1.7123 6.1091 11 7 2.1573 1.3894 6.4553 12 6 1.4034 1.9545 7.5772 13 6 1.7018 0.4684 5.5825 14 8 0.5956 -0.0416 5.5840 15 6 2.0400 -0.7213 -1.2492 16 1 3.1265 -0.7987 -1.2070 17 6 1.6320 0.0665 -2.4962 18 6 2.1698 -0.6368 -3.7445 19 6 1.5660 -2.0369 -3.8376 20 7 1.8249 -2.7542 -2.5817 21 6 2.4284 -3.9833 -2.5919 22 1 3.0120 -4.3054 -1.7422 23 6 2.2899 -4.8153 -3.6944 24 7 1.2479 -4.6881 -4.4883 25 14 3.5867 -6.1105 -4.0558 26 1 3.6829 -7.0483 -2.9085 27 1 3.2083 -6.8619 -5.2795 28 1 4.9001 -5.4505 -4.2670 29 6 1.4296 -2.1248 -1.3143 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 2.2489 -1.6317 1.1527 34 1 1.9775 -1.5508 3.8326 35 1 3.6490 -1.1204 3.3981 36 1 4.0747 2.4267 6.6207 37 1 2.0247 2.6784 8.1044 38 1 0.5084 2.4497 7.2008 39 1 1.1164 1.1557 8.2611 40 1 0.5449 0.1223 -2.5509 41 1 2.0448 1.0738 -2.4406 42 1 1.8990 -0.0628 -4.6307 43 1 3.2552 -0.7145 -3.6791 44 1 2.0231 -2.5760 -4.6673 45 1 0.4908 -1.9581 -3.9984 46 1 0.5335 -4.0742 -4.2562 47 1 0.3430 -2.0533 -1.2651 48 1 1.7966 -2.7220 -0.4796 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661996522.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:18 Heat of formation + Delta-G solvation = 31.465182 kcal Electronic energy + Delta-G solvation = -29850.600597 eV Core-core repulsion = 25750.492568 eV Total energy + Delta-G solvation = -4100.108029 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.64946 -39.95923 -38.21046 -37.44145 -35.69444 -35.20123 -33.26610 -32.24576 -31.07010 -30.39866 -28.67383 -28.06765 -27.05168 -25.13713 -24.07432 -23.01023 -22.31558 -21.67580 -20.71496 -20.22677 -18.76263 -17.92228 -17.74199 -17.31039 -16.51217 -16.38505 -16.14039 -15.63089 -15.06174 -14.78052 -14.64757 -14.47497 -14.15880 -13.81409 -13.60322 -13.51111 -13.41834 -13.19560 -12.88302 -12.78829 -12.71650 -12.29838 -12.18128 -12.14820 -11.99469 -11.64037 -11.01452 -10.86831 -10.76114 -10.58565 -10.48246 -10.34424 -10.22695 -10.06042 -9.98692 -9.86604 -9.71660 -9.26078 -9.00608 -8.78180 -8.38024 -6.88795 -6.07843 -3.24706 1.40588 1.70258 2.44855 2.54360 2.79300 3.24944 3.47781 3.51575 3.69340 4.09082 4.40839 4.55894 4.60963 4.62142 4.84101 4.90045 4.96347 5.08162 5.10167 5.15830 5.31641 5.35147 5.47954 5.52361 5.61304 5.61785 5.76126 5.79322 5.91089 6.04568 6.12098 6.14320 6.22302 6.24188 6.38764 6.46932 6.51612 6.56580 6.66973 6.71111 6.83383 7.10792 7.20918 7.34192 7.48112 7.80989 7.96917 8.16749 8.56119 9.10260 9.83000 10.28226 11.20274 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019006 B = 0.002399 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.841456 B =11669.377533 C =12364.949955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.152 3.848 3 H 0.081 0.919 4 N -0.716 5.716 5 C 0.498 3.502 6 O -0.533 6.533 7 C 0.141 3.859 8 N -0.436 5.436 9 N -0.272 5.272 10 C 0.253 3.747 11 N -0.562 5.562 12 C 0.102 3.898 13 C 0.652 3.348 14 O -0.551 6.551 15 C -0.112 4.112 16 H 0.073 0.927 17 C -0.101 4.101 18 C -0.137 4.137 19 C 0.149 3.851 20 N -0.598 5.598 21 C -0.350 4.350 22 H 0.055 0.945 23 C -0.024 4.024 24 N -0.915 5.915 25 Si 1.063 2.937 26 H -0.293 1.293 27 H -0.286 1.286 28 H -0.294 1.294 29 C 0.153 3.847 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.404 0.596 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.231 0.769 37 H 0.093 0.907 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.059 0.941 41 H 0.049 0.951 42 H 0.052 0.948 43 H 0.057 0.943 44 H 0.078 0.922 45 H 0.016 0.984 46 H 0.269 0.731 47 H 0.025 0.975 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.149 13.884 21.237 25.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.048 3.952 3 H 0.100 0.900 4 N -0.369 5.369 5 C 0.282 3.718 6 O -0.409 6.409 7 C 0.015 3.985 8 N -0.256 5.256 9 N -0.093 5.093 10 C -0.046 4.046 11 N -0.292 5.292 12 C -0.040 4.040 13 C 0.351 3.649 14 O -0.424 6.424 15 C -0.133 4.133 16 H 0.092 0.908 17 C -0.139 4.139 18 C -0.176 4.176 19 C 0.023 3.977 20 N -0.322 5.322 21 C -0.479 4.479 22 H 0.073 0.927 23 C -0.226 4.226 24 N -0.555 5.555 25 Si 0.893 3.107 26 H -0.220 1.220 27 H -0.211 1.211 28 H -0.221 1.221 29 C 0.027 3.973 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.239 0.761 34 H 0.144 0.856 35 H 0.145 0.855 36 H 0.247 0.753 37 H 0.112 0.888 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.096 0.904 45 H 0.034 0.966 46 H 0.080 0.920 47 H 0.042 0.958 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.334 12.892 19.462 23.743 hybrid contribution -0.843 1.037 1.639 2.115 sum 3.491 13.928 21.101 25.524 Atomic orbital electron populations 1.22259 0.95378 1.02758 1.01917 1.21022 0.94171 0.96699 0.83351 0.90047 1.46103 1.66886 1.14425 1.09475 1.20828 0.78300 0.87860 0.84858 1.90709 1.49580 1.15851 1.84742 1.21265 1.05578 0.89489 0.82124 1.48188 1.10856 1.38950 1.27580 1.76982 1.11222 1.07468 1.13642 1.25930 0.85139 0.99349 0.94174 1.45867 1.14409 1.39386 1.29510 1.21795 0.96704 0.99301 0.86191 1.16639 0.84917 0.82038 0.81266 1.91095 1.18400 1.57254 1.75634 1.21945 1.01010 0.97885 0.92468 0.90827 1.21419 1.00518 0.97395 0.94566 1.21989 1.00822 0.98663 0.96113 1.20873 0.96389 0.89865 0.90550 1.44077 1.70602 1.17705 0.99772 1.19932 1.27720 0.93356 1.06916 0.92739 1.25825 1.00536 0.99802 0.96434 1.70778 1.06432 1.36773 1.41484 0.83552 0.75343 0.75694 0.76120 1.22004 1.21109 1.22091 1.20992 0.96027 0.90370 0.89928 0.92866 0.91448 0.91551 0.76076 0.85633 0.85511 0.75271 0.88845 0.90485 0.90458 0.92223 0.93259 0.92966 0.92446 0.90352 0.96648 0.91984 0.95778 0.93229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.42 8.76 37.16 0.33 -2.09 16 2 C 0.15 2.25 2.35 -67.93 -0.16 2.09 16 3 H 0.08 1.29 7.58 -51.93 -0.39 0.90 16 4 N -0.72 -9.54 5.01 -53.80 -0.27 -9.81 16 5 C 0.50 7.11 7.86 -10.99 -0.09 7.02 16 6 O -0.53 -9.70 16.09 5.55 0.09 -9.61 16 7 C 0.14 1.58 6.87 -5.19 -0.04 1.55 16 8 N -0.44 -5.61 3.11 -66.31 -0.21 -5.82 16 9 N -0.27 -3.01 12.53 29.87 0.37 -2.63 16 10 C 0.25 1.82 12.61 -89.12 -1.12 0.70 16 11 N -0.56 -5.13 3.14 -130.11 -0.41 -5.54 16 12 C 0.10 0.49 11.08 59.85 0.66 1.16 16 13 C 0.65 9.01 8.60 -86.74 -0.75 8.26 16 14 O -0.55 -9.46 17.77 5.09 0.09 -9.37 16 15 C -0.11 -1.84 2.27 -90.50 -0.21 -2.05 16 16 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 17 C -0.10 -1.64 4.89 -26.69 -0.13 -1.77 16 18 C -0.14 -2.53 6.06 -26.84 -0.16 -2.70 16 19 C 0.15 3.42 4.66 -3.93 -0.02 3.40 16 20 N -0.60 -14.41 2.86 -172.58 -0.49 -14.90 16 21 C -0.35 -9.46 9.49 -15.06 -0.14 -9.60 16 22 H 0.05 1.46 7.94 -52.49 -0.42 1.05 16 23 C -0.02 -0.66 4.69 -17.43 -0.08 -0.74 16 24 N -0.91 -27.04 12.40 55.49 0.69 -26.35 16 25 Si 1.06 24.82 29.99 -169.99 -5.10 19.72 16 26 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 28 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 29 C 0.15 2.99 5.26 -3.71 -0.02 2.97 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.94 6.59 -51.93 -0.34 0.60 16 32 H 0.07 0.99 6.23 -51.93 -0.32 0.67 16 33 H 0.40 4.71 7.27 -40.82 -0.30 4.42 16 34 H 0.13 1.22 8.11 -51.93 -0.42 0.80 16 35 H 0.13 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.23 0.29 8.06 -52.49 -0.42 -0.13 16 37 H 0.09 0.08 8.07 -51.93 -0.42 -0.34 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.06 0.96 6.62 -51.93 -0.34 0.61 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16 44 H 0.08 2.03 6.30 -51.93 -0.33 1.70 16 45 H 0.02 0.36 7.87 -51.93 -0.41 -0.04 16 46 H 0.27 8.03 6.71 -40.82 -0.27 7.75 16 47 H 0.02 0.49 6.06 -51.93 -0.31 0.17 16 48 H 0.05 0.93 6.74 -51.93 -0.35 0.58 16 LS Contribution 384.99 15.07 5.80 5.80 Total: -1.00 -38.54 384.99 -8.59 -47.13 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -7.23 Total: 3.21 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: -1.93 Total: 8.18 kcal Atomic # 7 Polarization: -64.74 SS G_CDS: -0.32 Total: -65.05 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: 0.18 Total: -18.98 kcal Atomic # 14 Polarization: 24.82 SS G_CDS: -5.10 Total: 19.72 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -38.54 -8.59 -47.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661996522.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.591 kcal (2) G-P(sol) polarization free energy of solvation -38.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds