Wall clock time and date at job start Tue Mar 31 2020 19:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47070 * 2 1 4 4 N 1.46502 * 109.46656 * 119.99917 * 2 1 3 5 5 C 1.34776 * 119.99930 * 274.99930 * 4 2 1 6 6 O 1.21285 * 119.99826 * 0.02562 * 5 4 2 7 7 C 1.50699 * 120.00058 * 180.02562 * 5 4 2 8 8 N 1.46503 * 109.47377 * 180.02562 * 7 5 4 9 9 N 1.40172 * 126.34946 * 270.02568 * 8 7 5 10 10 C 1.29392 * 108.14351 * 179.97438 * 9 8 7 11 11 N 1.37365 * 108.82815 * 359.97438 * 10 9 8 12 12 C 1.46501 * 125.83451 * 180.02562 * 11 10 9 13 13 C 1.34816 * 108.33245 * 359.73362 * 11 10 9 14 14 O 1.21815 * 126.30332 * 180.28177 * 13 11 10 15 15 C 1.53000 * 109.47206 * 239.99724 * 2 1 3 16 16 H 1.08999 * 109.52170 * 184.92075 * 15 2 1 17 17 C 1.53042 * 109.49466 * 64.83837 * 15 2 1 18 18 C 1.53040 * 109.53399 * 178.68321 * 17 15 2 19 19 C 1.52757 * 109.38837 * 61.23930 * 18 17 15 20 20 N 1.46933 * 109.00863 * 305.59166 * 19 18 17 21 21 C 1.36935 * 120.62781 * 233.58305 * 20 19 18 22 22 H 1.07995 * 119.99873 * 152.09995 * 21 20 19 23 23 C 1.38811 * 119.99806 * 332.09376 * 21 20 19 24 24 N 1.31615 * 120.00651 * 335.28172 * 23 21 20 25 25 Si 1.86803 * 119.99607 * 155.00135 * 23 21 20 26 26 H 1.48496 * 109.47436 * 60.00138 * 25 23 21 27 27 H 1.48503 * 109.47168 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47355 * 300.00110 * 25 23 21 29 29 C 1.46923 * 118.73785 * 53.30252 * 20 19 18 30 30 H 1.09002 * 109.47338 * 300.00273 * 1 2 3 31 31 H 1.08998 * 109.47314 * 60.00340 * 1 2 3 32 32 H 1.09004 * 109.47402 * 179.97438 * 1 2 3 33 33 H 0.96996 * 120.00312 * 95.00159 * 4 2 1 34 34 H 1.08998 * 109.46986 * 300.00163 * 7 5 4 35 35 H 1.09003 * 109.47316 * 59.99843 * 7 5 4 36 36 H 1.07998 * 125.59090 * 179.97438 * 10 9 8 37 37 H 1.08998 * 109.46763 * 359.97039 * 12 11 10 38 38 H 1.08994 * 109.47565 * 119.97352 * 12 11 10 39 39 H 1.09004 * 109.46904 * 239.97761 * 12 11 10 40 40 H 1.08990 * 109.46013 * 298.70087 * 17 15 2 41 41 H 1.09000 * 109.45871 * 58.66279 * 17 15 2 42 42 H 1.09003 * 109.50007 * 181.32125 * 18 17 15 43 43 H 1.09008 * 109.49676 * 301.38120 * 18 17 15 44 44 H 1.08994 * 109.51278 * 185.70471 * 19 18 17 45 45 H 1.09000 * 109.43033 * 65.42089 * 19 18 17 46 46 H 0.97009 * 119.99439 * 353.96783 * 24 23 21 47 47 H 1.09006 * 109.58528 * 66.43409 * 29 20 19 48 48 H 1.09001 * 109.58720 * 186.85700 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.1469 -0.0182 2.3572 6 8 1.8581 1.1584 2.4117 7 6 2.6497 -0.7285 3.5875 8 7 2.6983 0.2127 4.7092 9 7 3.7858 1.0203 5.0696 10 6 3.4468 1.7123 6.1091 11 7 2.1573 1.3894 6.4553 12 6 1.4034 1.9545 7.5772 13 6 1.7018 0.4684 5.5825 14 8 0.5956 -0.0416 5.5840 15 6 2.0400 -0.7213 -1.2492 16 1 3.1265 -0.7987 -1.2070 17 6 1.6320 0.0665 -2.4962 18 6 2.1698 -0.6368 -3.7445 19 6 1.5660 -2.0369 -3.8376 20 7 1.8249 -2.7542 -2.5817 21 6 2.4284 -3.9833 -2.5919 22 1 3.0120 -4.3054 -1.7422 23 6 2.2899 -4.8153 -3.6944 24 7 1.2479 -4.6881 -4.4883 25 14 3.5867 -6.1105 -4.0558 26 1 3.6829 -7.0483 -2.9085 27 1 3.2083 -6.8619 -5.2795 28 1 4.9001 -5.4505 -4.2670 29 6 1.4296 -2.1248 -1.3143 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 2.2489 -1.6317 1.1527 34 1 1.9775 -1.5508 3.8326 35 1 3.6490 -1.1204 3.3981 36 1 4.0747 2.4267 6.6207 37 1 2.0247 2.6784 8.1044 38 1 0.5084 2.4497 7.2008 39 1 1.1164 1.1557 8.2611 40 1 0.5449 0.1223 -2.5509 41 1 2.0448 1.0738 -2.4406 42 1 1.8990 -0.0628 -4.6307 43 1 3.2552 -0.7145 -3.6791 44 1 2.0231 -2.5760 -4.6673 45 1 0.4908 -1.9581 -3.9984 46 1 0.5335 -4.0742 -4.2562 47 1 0.3430 -2.0533 -1.2651 48 1 1.7966 -2.7220 -0.4796 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661996522.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:17 Heat of formation + Delta-G solvation = 5.223007 kcal Electronic energy + Delta-G solvation = -29851.738543 eV Core-core repulsion = 25750.492568 eV Total energy + Delta-G solvation = -4101.245975 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.43609 -41.17191 -39.67907 -38.44840 -37.00787 -36.18351 -34.88008 -33.22137 -32.30605 -32.23463 -29.80494 -29.17014 -27.71141 -27.05429 -25.37752 -24.09536 -23.71976 -22.66859 -22.04412 -21.43623 -20.25561 -19.37212 -18.75778 -18.61236 -17.45209 -17.25134 -17.11213 -16.61504 -16.34155 -16.19926 -15.99443 -15.55485 -15.49847 -15.43750 -15.07922 -14.96296 -14.39646 -14.34933 -14.02647 -13.78820 -13.61896 -13.57455 -13.50236 -13.25412 -12.98935 -12.94257 -12.75735 -12.61580 -12.13459 -11.91557 -11.88856 -11.73737 -11.67395 -11.58684 -11.44730 -11.38868 -11.08069 -10.78094 -10.42762 -10.20354 -9.68306 -8.89126 -8.21149 -5.36830 0.63589 1.07265 1.44320 1.52557 1.59617 1.66920 1.85150 2.05376 2.31708 2.67267 3.23316 3.43089 3.46190 3.59833 3.82522 3.86938 3.94609 4.07124 4.08636 4.11627 4.21950 4.29446 4.34529 4.39895 4.46815 4.52584 4.55925 4.72985 4.74404 4.77149 4.84837 4.86152 4.90629 4.97067 5.02863 5.08886 5.14334 5.22606 5.29081 5.33443 5.43192 5.56367 5.66233 5.86389 6.39205 6.41948 6.58620 6.89336 7.07223 7.08802 7.80584 8.26139 9.03396 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019006 B = 0.002399 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.841456 B =11669.377533 C =12364.949955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.162 3.838 3 H 0.078 0.922 4 N -0.710 5.710 5 C 0.498 3.502 6 O -0.574 6.574 7 C 0.139 3.861 8 N -0.445 5.445 9 N -0.312 5.312 10 C 0.279 3.721 11 N -0.559 5.559 12 C 0.094 3.906 13 C 0.630 3.370 14 O -0.600 6.600 15 C -0.095 4.095 16 H 0.068 0.932 17 C -0.099 4.099 18 C -0.126 4.126 19 C 0.153 3.847 20 N -0.616 5.616 21 C -0.351 4.351 22 H 0.055 0.945 23 C -0.078 4.078 24 N -0.945 5.945 25 Si 1.112 2.888 26 H -0.274 1.274 27 H -0.296 1.296 28 H -0.281 1.281 29 C 0.152 3.848 30 H 0.043 0.957 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.413 0.587 34 H 0.136 0.864 35 H 0.157 0.843 36 H 0.291 0.709 37 H 0.144 0.856 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.051 0.949 44 H 0.041 0.959 45 H 0.002 0.998 46 H 0.254 0.746 47 H 0.022 0.978 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.104 15.490 23.288 28.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.057 3.943 3 H 0.096 0.904 4 N -0.363 5.363 5 C 0.284 3.716 6 O -0.453 6.453 7 C 0.014 3.986 8 N -0.264 5.264 9 N -0.133 5.133 10 C -0.019 4.019 11 N -0.286 5.286 12 C -0.047 4.047 13 C 0.329 3.671 14 O -0.478 6.478 15 C -0.115 4.115 16 H 0.087 0.913 17 C -0.137 4.137 18 C -0.165 4.165 19 C 0.027 3.973 20 N -0.341 5.341 21 C -0.481 4.481 22 H 0.073 0.927 23 C -0.274 4.274 24 N -0.587 5.587 25 Si 0.937 3.063 26 H -0.200 1.200 27 H -0.222 1.222 28 H -0.207 1.207 29 C 0.027 3.973 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.250 0.750 34 H 0.154 0.846 35 H 0.175 0.825 36 H 0.306 0.694 37 H 0.162 0.838 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.070 0.930 44 H 0.060 0.940 45 H 0.020 0.980 46 H 0.063 0.937 47 H 0.040 0.960 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.324 14.529 21.565 26.760 hybrid contribution -1.466 0.620 1.102 1.936 sum 4.858 15.149 22.667 27.693 Atomic orbital electron populations 1.22194 0.95238 1.02328 1.01897 1.20818 0.94091 0.96303 0.83101 0.90363 1.46038 1.66414 1.14774 1.09042 1.21347 0.77286 0.87389 0.85572 1.90680 1.51494 1.17747 1.85425 1.21421 1.07309 0.89238 0.80623 1.48361 1.11238 1.39320 1.27486 1.76995 1.11065 1.09183 1.16054 1.27181 0.84301 0.97957 0.92461 1.46137 1.15237 1.37980 1.29284 1.22167 0.97248 1.00177 0.85069 1.17080 0.84677 0.82942 0.82383 1.91033 1.20359 1.59253 1.77120 1.21707 1.00327 0.95942 0.93542 0.91309 1.21423 1.00892 0.98329 0.93009 1.21851 1.00085 0.96161 0.98414 1.20745 0.95521 0.91892 0.89101 1.44327 1.70854 1.17398 1.01493 1.20221 1.26917 0.94257 1.06667 0.92707 1.27126 1.01555 1.01925 0.96834 1.70898 1.07266 1.37896 1.42618 0.82889 0.73501 0.73884 0.76024 1.20009 1.22189 1.20711 1.21119 0.96048 0.91998 0.88147 0.93816 0.90539 0.92111 0.75030 0.84602 0.82543 0.69367 0.83772 0.91599 0.90462 0.91778 0.90523 0.90817 0.93011 0.94020 0.97967 0.93659 0.96029 0.92747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.52 8.76 71.98 0.63 -3.89 16 2 C 0.16 4.58 2.35 44.99 0.11 4.68 16 3 H 0.08 2.35 7.58 -2.39 -0.02 2.33 16 4 N -0.71 -18.24 5.01 -442.53 -2.22 -20.45 16 5 C 0.50 13.96 7.86 87.66 0.69 14.65 16 6 O -0.57 -20.85 16.09 -3.04 -0.05 -20.90 16 7 C 0.14 3.02 6.87 85.63 0.59 3.61 16 8 N -0.45 -11.14 3.11 -481.78 -1.50 -12.64 16 9 N -0.31 -6.27 12.53 -59.42 -0.74 -7.02 16 10 C 0.28 3.10 12.61 179.82 2.27 5.36 16 11 N -0.56 -9.13 3.14 -683.69 -2.15 -11.27 16 12 C 0.09 0.69 11.08 127.77 1.42 2.10 16 13 C 0.63 17.29 8.60 178.99 1.54 18.83 16 14 O -0.60 -21.27 17.77 -4.72 -0.08 -21.35 16 15 C -0.09 -2.97 2.27 -10.72 -0.02 -2.99 16 16 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 17 C -0.10 -3.01 4.89 30.62 0.15 -2.86 16 18 C -0.13 -4.53 6.06 30.53 0.19 -4.35 16 19 C 0.15 7.14 4.66 86.22 0.40 7.54 16 20 N -0.62 -29.90 2.86 -699.93 -2.00 -31.90 16 21 C -0.35 -19.07 9.49 84.03 0.80 -18.27 16 22 H 0.06 2.92 7.94 -2.91 -0.02 2.90 16 23 C -0.08 -4.40 4.69 84.86 0.40 -4.00 16 24 N -0.94 -57.44 12.40 21.65 0.27 -57.17 16 25 Si 1.11 50.35 29.99 68.60 2.06 52.41 16 26 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 27 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 28 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 29 C 0.15 5.86 5.26 86.36 0.45 6.31 16 30 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.08 2.02 6.59 -2.39 -0.02 2.01 16 32 H 0.06 1.79 6.23 -2.39 -0.01 1.77 16 33 H 0.41 9.15 7.27 -92.71 -0.67 8.48 16 34 H 0.14 2.61 8.11 -2.39 -0.02 2.59 16 35 H 0.16 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.29 -0.92 8.06 -2.91 -0.02 -0.95 16 37 H 0.14 -0.44 8.07 -2.39 -0.02 -0.46 16 38 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 40 H 0.06 1.93 6.62 -2.39 -0.02 1.91 16 41 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 44 H 0.04 2.23 6.30 -2.39 -0.02 2.21 16 45 H 0.00 0.11 7.87 -2.39 -0.02 0.09 16 46 H 0.25 15.74 6.71 -92.70 -0.62 15.12 16 47 H 0.02 0.86 6.06 -2.38 -0.01 0.85 16 48 H 0.05 2.01 6.74 -2.39 -0.02 1.99 16 Total: -1.00 -88.20 384.99 3.64 -84.57 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: 0.45 Total: 18.99 kcal Atomic # 6 Polarization: 17.15 SS G_CDS: 9.60 Total: 26.75 kcal Atomic # 7 Polarization: -132.12 SS G_CDS: -8.34 Total: -140.46 kcal Atomic # 8 Polarization: -42.12 SS G_CDS: -0.13 Total: -42.25 kcal Atomic # 14 Polarization: 50.35 SS G_CDS: 2.06 Total: 52.41 kcal Total: -88.20 3.64 -84.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661996522.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.788 kcal (2) G-P(sol) polarization free energy of solvation -88.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds