Wall clock time and date at job start Tue Mar 31 2020 20:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46503 * 109.47618 * 2 1 4 4 C 1.35396 * 126.43763 * 265.02593 * 3 2 1 5 5 C 1.35571 * 107.15829 * 179.97438 * 4 3 2 6 6 N 1.33096 * 108.34810 * 0.26655 * 5 4 3 7 7 C 1.31621 * 109.09881 * 359.56306 * 6 5 4 8 8 C 1.47406 * 125.86719 * 180.16910 * 7 6 5 9 9 O 1.21599 * 119.99912 * 180.30654 * 8 7 6 10 10 N 1.34769 * 120.00014 * 0.31501 * 8 7 6 11 11 C 1.46494 * 120.00206 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.47428 * 179.97438 * 11 10 8 13 13 C 1.53004 * 109.47223 * 179.97438 * 12 11 10 14 14 H 1.09005 * 109.46896 * 55.00066 * 13 12 11 15 15 C 1.52998 * 109.46864 * 174.99756 * 13 12 11 16 16 N 1.46896 * 109.47141 * 295.00278 * 13 12 11 17 17 C 1.46903 * 111.00077 * 155.00099 * 16 13 12 18 18 C 1.50698 * 109.47118 * 179.97438 * 17 16 13 19 19 O 1.21294 * 120.00113 * 0.02562 * 18 17 16 20 20 N 1.34774 * 120.00035 * 179.97438 * 18 17 16 21 21 C 1.37093 * 120.00462 * 180.02562 * 20 18 17 22 22 H 1.08007 * 119.99396 * 0.02562 * 21 20 18 23 23 C 1.38950 * 120.00601 * 180.02562 * 21 20 18 24 24 N 1.31413 * 119.99621 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00294 * 179.97438 * 23 21 20 26 26 H 1.48510 * 109.46969 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47256 * 120.00048 * 25 23 21 28 28 H 1.48494 * 109.47198 * 240.00328 * 25 23 21 29 29 H 1.09003 * 109.47031 * 59.99423 * 1 2 3 30 30 H 1.08988 * 109.47438 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46837 * 300.00139 * 1 2 3 32 32 H 1.09001 * 109.46976 * 240.00387 * 2 1 3 33 33 H 1.08996 * 109.47339 * 120.00363 * 2 1 3 34 34 H 1.08002 * 126.42168 * 359.97438 * 4 3 2 35 35 H 1.08002 * 125.82262 * 179.97438 * 5 4 3 36 36 H 0.97007 * 120.00015 * 359.97438 * 10 8 7 37 37 H 1.08997 * 109.47422 * 299.99530 * 11 10 8 38 38 H 1.08998 * 109.47368 * 59.99722 * 11 10 8 39 39 H 1.09001 * 109.47098 * 299.99488 * 12 11 10 40 40 H 1.09000 * 109.47173 * 59.99938 * 12 11 10 41 41 H 1.08990 * 109.47673 * 299.99915 * 15 13 12 42 42 H 1.09005 * 109.47111 * 60.00442 * 15 13 12 43 43 H 1.09006 * 109.46669 * 179.97438 * 15 13 12 44 44 H 1.00899 * 111.00529 * 31.04396 * 16 13 12 45 45 H 1.08998 * 109.47101 * 299.99751 * 17 16 13 46 46 H 1.08999 * 109.47065 * 59.99578 * 17 16 13 47 47 H 0.97005 * 119.99791 * 0.02562 * 20 18 17 48 48 H 0.96997 * 119.99861 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3756 2.1079 -1.0852 5 6 2.7651 3.3275 -0.6393 6 7 2.6543 3.3437 0.6870 7 6 2.1987 2.1784 1.0954 8 6 1.9344 1.7965 2.4944 9 8 1.5174 0.6838 2.7525 10 7 2.1548 2.6807 3.4873 11 6 1.8926 2.3011 4.8777 12 6 2.2233 3.4773 5.7987 13 6 1.9489 3.0810 7.2508 14 1 2.5020 2.1726 7.4902 15 6 2.3962 4.2104 8.1809 16 7 0.5109 2.8400 7.4292 17 6 0.2656 1.9265 8.5532 18 6 -1.2171 1.7042 8.7055 19 8 -1.9931 2.2524 7.9516 20 7 -1.6808 0.8954 9.6788 21 6 -3.0296 0.6927 9.8170 22 1 -3.7206 1.1809 9.1457 23 6 -3.5077 -0.1407 10.8208 24 7 -2.6668 -0.7351 11.6373 25 14 -5.3455 -0.4163 11.0096 26 1 -6.0716 0.3607 9.9730 27 1 -5.6487 -1.8610 10.8476 28 1 -5.7773 0.0319 12.3578 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0275 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.3542 1.7778 -2.1133 35 1 3.1112 4.1446 -1.2548 36 1 2.4877 3.5683 3.2814 37 1 0.8414 2.0358 4.9900 38 1 2.5136 1.4458 5.1441 39 1 3.2747 3.7421 5.6865 40 1 1.6027 4.3329 5.5325 41 1 3.4632 4.3891 8.0485 42 1 1.8432 5.1188 7.9415 43 1 2.2003 3.9282 9.2154 44 1 0.0950 2.4882 6.5799 45 1 0.7584 0.9735 8.3610 46 1 0.6633 2.3629 9.4695 47 1 -1.0601 0.4567 10.2815 48 1 -3.0006 -1.3166 12.3383 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662914397.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:12 Heat of formation + Delta-G solvation = -16.567263 kcal Electronic energy + Delta-G solvation = -28429.510638 eV Core-core repulsion = 24327.319766 eV Total energy + Delta-G solvation = -4102.190872 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.62233 -39.61510 -38.43972 -37.15945 -35.61861 -34.66002 -33.85995 -31.69236 -31.12210 -30.73809 -30.13582 -28.73610 -26.39330 -24.83806 -24.12807 -23.63399 -22.46305 -21.61952 -20.69981 -19.95070 -19.21118 -18.12418 -17.85363 -16.70647 -16.46256 -16.18899 -15.96609 -15.63346 -15.27282 -14.91562 -14.77868 -14.48275 -14.28554 -14.15117 -13.89528 -13.82699 -13.61115 -13.50161 -13.09413 -12.97583 -12.47845 -12.42938 -12.14729 -11.83189 -11.76360 -11.65938 -11.55069 -11.28834 -11.22909 -11.06049 -10.77337 -10.58814 -10.37190 -10.31826 -10.19170 -10.16155 -9.48745 -9.38467 -8.87133 -8.40521 -8.03420 -7.92290 -6.38621 -3.79096 1.06247 2.08153 2.29193 2.98684 3.15734 3.18681 3.28916 3.36530 3.94861 4.02474 4.12192 4.26400 4.35445 4.39502 4.60874 4.62374 4.86151 4.88011 4.92298 4.96674 5.06483 5.15377 5.28245 5.28885 5.34998 5.40806 5.42510 5.55405 5.73402 5.75185 5.82999 5.84927 5.87724 5.91972 6.03706 6.09913 6.14100 6.24800 6.28864 6.39760 6.54992 7.10855 7.27802 7.51691 7.58599 7.70135 7.88734 8.10163 8.64966 9.21461 9.58142 10.09777 10.79308 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012610 B = 0.002126 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.002477 B =13169.660641 C =14875.312207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.094 3.906 3 N -0.412 5.412 4 C -0.030 4.030 5 C -0.029 4.029 6 N -0.447 5.447 7 C 0.140 3.860 8 C 0.605 3.395 9 O -0.535 6.535 10 N -0.702 5.702 11 C 0.114 3.886 12 C -0.133 4.133 13 C 0.087 3.913 14 H 0.045 0.955 15 C -0.139 4.139 16 N -0.666 5.666 17 C 0.050 3.950 18 C 0.441 3.559 19 O -0.583 6.583 20 N -0.565 5.565 21 C -0.297 4.297 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.110 0.890 34 H 0.182 0.818 35 H 0.178 0.822 36 H 0.412 0.588 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.053 0.947 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.349 0.651 45 H 0.044 0.956 46 H 0.086 0.914 47 H 0.392 0.608 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.019 4.282 -22.282 27.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.027 4.027 3 N -0.092 5.092 4 C -0.168 4.168 5 C -0.182 4.182 6 N -0.169 5.169 7 C -0.119 4.119 8 C 0.388 3.612 9 O -0.411 6.411 10 N -0.353 5.353 11 C -0.009 4.009 12 C -0.171 4.171 13 C -0.024 4.024 14 H 0.063 0.937 15 C -0.197 4.197 16 N -0.301 5.301 17 C -0.083 4.083 18 C 0.227 3.773 19 O -0.467 6.467 20 N -0.202 5.202 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.181 4.181 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.111 0.889 33 H 0.129 0.871 34 H 0.200 0.800 35 H 0.195 0.805 36 H 0.248 0.752 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.170 0.830 45 H 0.062 0.938 46 H 0.104 0.896 47 H 0.225 0.775 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 15.152 4.728 -21.461 26.693 hybrid contribution -0.250 -1.575 -0.595 1.702 sum 14.902 3.152 -22.057 26.805 Atomic orbital electron populations 1.22076 0.93252 1.03706 1.03168 1.22168 0.96590 0.78545 1.05390 1.45307 1.44826 1.12981 1.06113 1.22947 1.06736 0.94023 0.93138 1.22428 1.07308 0.97503 0.90953 1.70184 1.15368 1.18569 1.12752 1.22626 1.10318 0.88676 0.90279 1.16451 0.78036 0.84626 0.82048 1.90838 1.46111 1.20624 1.83536 1.45597 1.66436 1.17177 1.06123 1.21571 1.02277 0.98142 0.78911 1.21995 1.02733 0.98272 0.94135 1.21453 0.89350 0.98088 0.93494 0.93699 1.21784 0.99715 0.98712 0.99495 1.60199 1.10587 1.50563 1.08765 1.21726 0.96150 0.94645 0.95767 1.19831 0.89246 0.83849 0.84393 1.90524 1.57888 1.52195 1.46066 1.41871 1.08272 1.41310 1.28714 1.19751 0.82688 1.25842 1.14393 0.87897 1.25262 1.00267 0.96615 0.95916 1.69622 1.34800 1.31138 1.18824 0.85802 0.82311 0.78025 0.78219 1.19231 1.20802 1.20763 0.92251 0.90112 0.91132 0.88923 0.87139 0.80047 0.80496 0.75164 0.90545 0.91072 0.90386 0.89796 0.92831 0.91798 0.92402 0.82973 0.93842 0.89559 0.77474 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 10.23 37.15 0.38 -0.91 16 2 C 0.09 0.72 6.18 -4.04 -0.02 0.70 16 3 N -0.41 -3.87 2.76 -114.59 -0.32 -4.19 16 4 C -0.03 -0.22 11.53 -16.93 -0.20 -0.41 16 5 C -0.03 -0.24 11.85 -17.96 -0.21 -0.45 16 6 N -0.45 -5.00 10.89 -11.26 -0.12 -5.13 16 7 C 0.14 1.64 7.79 -154.52 -1.20 0.43 16 8 C 0.60 7.74 7.81 -12.53 -0.10 7.64 16 9 O -0.54 -8.02 14.51 5.28 0.08 -7.95 16 10 N -0.70 -7.65 5.55 -61.40 -0.34 -7.99 16 11 C 0.11 1.27 5.50 -4.04 -0.02 1.25 16 12 C -0.13 -1.29 4.92 -26.73 -0.13 -1.42 16 13 C 0.09 1.03 2.65 -67.71 -0.18 0.85 16 14 H 0.05 0.52 7.80 -51.93 -0.40 0.11 16 15 C -0.14 -1.53 9.42 37.16 0.35 -1.18 16 16 N -0.67 -10.76 5.93 -107.99 -0.64 -11.40 16 17 C 0.05 0.89 5.97 -4.98 -0.03 0.86 16 18 C 0.44 10.65 7.82 -10.99 -0.09 10.57 16 19 O -0.58 -16.18 15.78 5.55 0.09 -16.09 16 20 N -0.56 -14.61 5.29 -10.96 -0.06 -14.66 16 21 C -0.30 -8.44 9.68 -14.94 -0.14 -8.59 16 22 H 0.10 3.08 7.16 -52.48 -0.38 2.70 16 23 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 24 N -0.90 -24.90 13.05 55.50 0.72 -24.17 16 25 Si 0.93 21.40 29.55 -169.99 -5.02 16.38 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 28 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.52 8.14 -51.94 -0.42 0.10 16 31 H 0.07 0.76 7.86 -51.93 -0.41 0.35 16 32 H 0.09 0.43 8.13 -51.93 -0.42 0.00 16 33 H 0.11 1.02 6.64 -51.93 -0.34 0.68 16 34 H 0.18 0.62 8.06 -52.49 -0.42 0.20 16 35 H 0.18 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.41 3.86 8.15 -40.82 -0.33 3.53 16 37 H 0.08 1.02 6.43 -51.93 -0.33 0.69 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.06 0.68 7.45 -51.93 -0.39 0.30 16 44 H 0.35 5.93 6.17 -39.29 -0.24 5.69 16 45 H 0.04 0.71 8.06 -51.93 -0.42 0.29 16 46 H 0.09 1.43 7.43 -51.93 -0.39 1.05 16 47 H 0.39 9.67 7.90 -40.82 -0.32 9.35 16 48 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 402.07 15.07 6.06 6.06 Total: -1.00 -34.88 402.07 -8.57 -43.45 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: -7.32 Total: 15.89 kcal Atomic # 6 Polarization: 11.50 SS G_CDS: -1.69 Total: 9.81 kcal Atomic # 7 Polarization: -66.79 SS G_CDS: -0.75 Total: -67.55 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: 0.16 Total: -24.04 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.88 -8.57 -43.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662914397.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.879 kcal (2) G-P(sol) polarization free energy of solvation -34.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds