Wall clock time and date at job start Tue Mar 31 2020 20:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46894 * 109.47409 * 2 1 4 4 C 1.46895 * 111.00156 * 59.18009 * 3 2 1 5 5 C 1.52999 * 109.46818 * 66.05099 * 4 3 2 6 6 N 1.46504 * 109.47164 * 180.02562 * 5 4 3 7 7 C 1.34778 * 120.00040 * 179.97438 * 6 5 4 8 8 O 1.21568 * 120.00093 * 0.02562 * 7 6 5 9 9 C 1.47707 * 120.00036 * 180.27230 * 7 6 5 10 10 C 1.41498 * 126.52158 * 179.43609 * 9 7 6 11 11 C 1.35368 * 105.50601 * 179.87914 * 10 9 7 12 12 N 1.35037 * 107.22511 * 0.38465 * 11 10 9 13 13 C 1.46499 * 124.88098 * 179.71216 * 12 11 10 14 14 C 1.53003 * 109.46772 * 125.01178 * 13 12 11 15 15 N 1.28464 * 110.23132 * 359.74176 * 12 11 10 16 16 C 1.46901 * 110.99861 * 295.22807 * 3 2 1 17 17 C 1.50703 * 109.47584 * 288.24258 * 16 3 2 18 18 O 1.21300 * 119.99226 * 354.29381 * 17 16 3 19 19 N 1.34770 * 120.00673 * 174.30139 * 17 16 3 20 20 C 1.37088 * 120.00397 * 179.97438 * 19 17 16 21 21 H 1.08002 * 120.00257 * 0.02562 * 20 19 17 22 22 C 1.38946 * 120.00319 * 179.97438 * 20 19 17 23 23 N 1.31413 * 120.00197 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00336 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.46840 * 0.02562 * 24 22 20 26 26 H 1.48495 * 109.47274 * 120.00333 * 24 22 20 27 27 H 1.48501 * 109.46894 * 240.00279 * 24 22 20 28 28 H 1.09000 * 109.46989 * 299.98680 * 1 2 3 29 29 H 1.08996 * 109.47131 * 59.98653 * 1 2 3 30 30 H 1.09005 * 109.47258 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46787 * 239.99684 * 2 1 3 32 32 H 1.09003 * 109.46701 * 120.00131 * 2 1 3 33 33 H 1.08995 * 109.47150 * 306.05121 * 4 3 2 34 34 H 1.09004 * 109.47252 * 186.04500 * 4 3 2 35 35 H 1.09001 * 109.47512 * 59.99758 * 5 4 3 36 36 H 1.09005 * 109.47087 * 299.99335 * 5 4 3 37 37 H 0.96995 * 119.99912 * 359.97438 * 6 5 4 38 38 H 1.08000 * 127.24908 * 0.02562 * 10 9 7 39 39 H 1.07996 * 126.38652 * 180.10583 * 11 10 9 40 40 H 1.08998 * 109.46966 * 245.01438 * 13 12 11 41 41 H 1.08997 * 109.47144 * 5.01644 * 13 12 11 42 42 H 1.09004 * 109.46801 * 179.97438 * 14 13 12 43 43 H 1.08998 * 109.47281 * 299.99427 * 14 13 12 44 44 H 1.08997 * 109.46906 * 60.00320 * 14 13 12 45 45 H 1.09002 * 109.47259 * 48.24031 * 16 3 2 46 46 H 1.08998 * 109.47347 * 168.23362 * 16 3 2 47 47 H 0.97008 * 119.99600 * 359.97438 * 19 17 16 48 48 H 0.97001 * 120.00909 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5328 2.1155 1.1777 5 6 2.1476 1.5121 2.4422 6 7 1.6615 2.2403 3.6169 7 6 2.0719 1.8816 4.8495 8 8 2.8457 0.9541 4.9866 9 6 1.5772 2.6119 6.0343 10 6 1.9062 2.3471 7.3847 11 6 1.2242 3.2644 8.1099 12 7 0.5246 4.0230 7.2389 13 6 -0.3550 5.1331 7.6134 14 6 0.0732 6.3975 6.8657 15 7 0.7407 3.6307 6.0349 16 6 1.6441 2.0761 -1.2406 17 6 2.4640 1.5367 -2.3843 18 8 3.3516 0.7381 -2.1704 19 7 2.2113 1.9417 -3.6446 20 6 2.9575 1.4514 -4.6849 21 1 3.7477 0.7402 -4.4945 22 6 2.6965 1.8686 -5.9843 23 7 1.7347 2.7335 -6.2161 24 14 3.7129 1.1999 -7.4019 25 1 4.7252 0.2476 -6.8791 26 1 2.8229 0.4983 -8.3613 27 1 4.3982 2.3221 -8.0921 28 1 -0.3633 0.5136 0.8901 29 1 -0.3633 0.5140 -0.8898 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 0.4468 2.0388 1.2295 34 1 1.8197 3.1641 1.0990 35 1 3.2336 1.5888 2.3904 36 1 1.8606 0.4635 2.5210 37 1 1.0444 2.9806 3.5075 38 1 2.5648 1.5770 7.7582 39 1 1.2340 3.3673 9.1849 40 1 -1.3836 4.8862 7.3505 41 1 -0.2858 5.3051 8.6874 42 1 -0.5815 7.2233 7.1439 43 1 1.1018 6.6443 7.1287 44 1 0.0040 6.2254 5.7916 45 1 0.5858 1.9107 -1.4426 46 1 1.8304 3.1445 -1.1321 47 1 1.5012 2.5802 -3.8157 48 1 1.5527 3.0251 -7.1232 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663431214.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:24 Heat of formation + Delta-G solvation = 17.893515 kcal Electronic energy + Delta-G solvation = -28304.078352 eV Core-core repulsion = 24203.381812 eV Total energy + Delta-G solvation = -4100.696540 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.98336 -39.57591 -38.75703 -37.04724 -35.02229 -34.72048 -33.78428 -31.25162 -31.19384 -30.63294 -30.18405 -29.24400 -26.35806 -25.11354 -24.24575 -23.54442 -22.31482 -21.73446 -20.48542 -19.95908 -18.89305 -18.15987 -17.76326 -16.95441 -16.46990 -16.19940 -16.06574 -15.76091 -15.30448 -14.94728 -14.71892 -14.51405 -14.30079 -14.03224 -13.89384 -13.51128 -13.31085 -13.18474 -12.99979 -12.93094 -12.79883 -12.68533 -12.09304 -12.00098 -11.82715 -11.61994 -11.46499 -11.33989 -11.19848 -11.09948 -10.89247 -10.41370 -10.30992 -10.26103 -10.17604 -9.61902 -9.44609 -9.40891 -9.06585 -8.42081 -7.91871 -7.81265 -6.37540 -3.77919 1.32387 1.83516 2.02904 2.98553 3.19445 3.29539 3.29733 3.37432 3.85504 3.97086 4.09073 4.28565 4.30111 4.39597 4.44597 4.54814 4.82356 4.92607 5.02255 5.07772 5.14598 5.17520 5.27831 5.34823 5.38061 5.45347 5.46214 5.48897 5.52907 5.66571 5.72048 5.88908 5.91766 5.99782 6.07806 6.12747 6.28638 6.34400 6.36198 6.39371 6.57438 7.25328 7.32782 7.38197 7.59672 7.62598 8.11418 8.11655 8.67285 9.23427 9.60021 10.12535 10.80467 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.021908 B = 0.001776 C = 0.001707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.750924 B =15766.172508 C =16396.223860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.047 3.953 3 N -0.507 5.507 4 C 0.040 3.960 5 C 0.122 3.878 6 N -0.716 5.716 7 C 0.604 3.396 8 O -0.531 6.531 9 C -0.016 4.016 10 C -0.178 4.178 11 C -0.021 4.021 12 N -0.282 5.282 13 C 0.116 3.884 14 C -0.169 4.169 15 N -0.260 5.260 16 C 0.042 3.958 17 C 0.446 3.554 18 O -0.574 6.574 19 N -0.568 5.568 20 C -0.296 4.296 21 H 0.103 0.897 22 C 0.020 3.980 23 N -0.904 5.904 24 Si 0.928 3.072 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.043 0.957 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.404 0.596 38 H 0.162 0.838 39 H 0.182 0.818 40 H 0.094 0.906 41 H 0.103 0.897 42 H 0.080 0.920 43 H 0.063 0.937 44 H 0.075 0.925 45 H 0.054 0.946 46 H 0.087 0.913 47 H 0.391 0.609 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.364 7.370 29.021 31.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.081 4.081 3 N -0.230 5.230 4 C -0.089 4.089 5 C -0.001 4.001 6 N -0.368 5.368 7 C 0.388 3.612 8 O -0.405 6.405 9 C -0.176 4.176 10 C -0.206 4.206 11 C -0.163 4.163 12 N -0.071 5.071 13 C -0.003 4.003 14 C -0.226 4.226 15 N -0.096 5.096 16 C -0.089 4.089 17 C 0.231 3.769 18 O -0.457 6.457 19 N -0.205 5.205 20 C -0.425 4.425 21 H 0.121 0.879 22 C -0.181 4.181 23 N -0.546 5.546 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.209 1.209 27 H -0.208 1.208 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.112 0.888 32 H 0.092 0.908 33 H 0.061 0.939 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.239 0.761 38 H 0.180 0.820 39 H 0.199 0.801 40 H 0.112 0.888 41 H 0.121 0.879 42 H 0.098 0.902 43 H 0.082 0.918 44 H 0.094 0.906 45 H 0.072 0.928 46 H 0.105 0.895 47 H 0.224 0.776 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.427 6.992 28.404 30.442 hybrid contribution -0.850 0.167 -0.356 0.936 sum -9.277 7.159 28.048 30.398 Atomic orbital electron populations 1.22462 0.98987 1.02288 1.01575 1.22274 0.91864 0.89892 1.04072 1.61661 1.59163 1.02054 1.00128 1.22279 0.97689 0.98630 0.90275 1.21372 1.00329 0.95969 0.82447 1.45769 1.48804 1.36484 1.05699 1.16833 0.80453 0.82539 0.81402 1.90818 1.34918 1.28985 1.85770 1.21972 1.02251 0.98204 0.95205 1.21801 1.04868 1.02673 0.91293 1.22887 0.99493 0.96066 0.97897 1.45636 1.33387 1.24971 1.03136 1.22028 0.93259 0.84016 1.01037 1.22087 1.02572 0.95715 1.02258 1.73435 1.17509 1.13736 1.04921 1.21923 0.98011 0.98843 0.90097 1.19745 0.87407 0.86265 0.83500 1.90527 1.34232 1.36999 1.83932 1.41871 1.32955 1.40783 1.04890 1.19745 1.14326 1.23587 0.84864 0.87880 1.25244 0.97267 0.96810 0.98745 1.69619 1.30755 1.32200 1.21984 0.85813 0.79463 0.78641 0.80514 1.19222 1.20850 1.20812 0.92845 0.92297 0.92130 0.88815 0.90829 0.93889 0.90314 0.90017 0.90992 0.76094 0.81992 0.80126 0.88807 0.87854 0.90156 0.91773 0.90625 0.92845 0.89459 0.77594 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.59 9.26 37.16 0.34 -2.24 16 2 C 0.05 0.75 5.52 -3.83 -0.02 0.73 16 3 N -0.51 -8.36 4.31 -236.08 -1.02 -9.38 16 4 C 0.04 0.50 4.81 -3.83 -0.02 0.49 16 5 C 0.12 1.59 5.60 -4.04 -0.02 1.56 16 6 N -0.72 -8.37 5.55 -61.29 -0.34 -8.71 16 7 C 0.60 8.21 7.82 -12.39 -0.10 8.11 16 8 O -0.53 -8.96 16.93 5.31 0.09 -8.87 16 9 C -0.02 -0.19 7.13 -82.77 -0.59 -0.78 16 10 C -0.18 -1.71 10.81 -39.36 -0.43 -2.14 16 11 C -0.02 -0.14 11.40 -17.16 -0.20 -0.34 16 12 N -0.28 -2.03 3.41 -61.33 -0.21 -2.23 16 13 C 0.12 0.37 7.12 -4.04 -0.03 0.34 16 14 C -0.17 -0.58 10.02 37.16 0.37 -0.21 16 15 N -0.26 -2.59 11.36 33.42 0.38 -2.21 16 16 C 0.04 0.75 5.34 -4.97 -0.03 0.73 16 17 C 0.45 10.56 7.36 -10.99 -0.08 10.48 16 18 O -0.57 -15.67 14.70 5.54 0.08 -15.59 16 19 N -0.57 -14.44 5.29 -10.97 -0.06 -14.49 16 20 C -0.30 -8.30 9.68 -14.94 -0.14 -8.44 16 21 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 22 C 0.02 0.55 5.50 -17.47 -0.10 0.46 16 23 N -0.90 -24.74 13.05 55.50 0.72 -24.02 16 24 Si 0.93 21.29 29.55 -169.99 -5.02 16.26 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 H 0.05 0.63 6.26 -51.93 -0.33 0.31 16 29 H 0.06 0.83 6.29 -51.93 -0.33 0.50 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.09 1.82 6.54 -51.93 -0.34 1.48 16 32 H 0.07 1.09 6.51 -51.93 -0.34 0.76 16 33 H 0.04 0.49 5.97 -51.93 -0.31 0.18 16 34 H 0.08 0.92 7.86 -51.93 -0.41 0.51 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.07 0.98 6.57 -51.93 -0.34 0.64 16 37 H 0.40 3.93 8.20 -40.82 -0.33 3.60 16 38 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 39 H 0.18 0.47 8.06 -52.49 -0.42 0.05 16 40 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.10 0.04 8.04 -51.93 -0.42 -0.38 16 42 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 43 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 45 H 0.05 0.86 5.97 -51.93 -0.31 0.55 16 46 H 0.09 1.39 7.81 -51.93 -0.41 0.99 16 47 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 48 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 397.14 15.07 5.98 5.98 Total: -1.00 -35.61 397.14 -7.49 -43.10 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -7.07 Total: 11.42 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: -1.03 Total: 8.74 kcal Atomic # 7 Polarization: -60.52 SS G_CDS: -0.52 Total: -61.05 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: 0.17 Total: -24.46 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.61 -7.49 -43.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663431214.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.989 kcal (2) G-P(sol) polarization free energy of solvation -35.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds