Wall clock time and date at job start Tue Mar 31 2020 20:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46894 * 109.47409 * 2 1 4 4 C 1.46895 * 111.00156 * 59.18009 * 3 2 1 5 5 C 1.52999 * 109.46818 * 66.05099 * 4 3 2 6 6 N 1.46504 * 109.47164 * 180.02562 * 5 4 3 7 7 C 1.34778 * 120.00040 * 179.97438 * 6 5 4 8 8 O 1.21568 * 120.00093 * 0.02562 * 7 6 5 9 9 C 1.47707 * 120.00036 * 180.27230 * 7 6 5 10 10 C 1.41498 * 126.52158 * 179.43609 * 9 7 6 11 11 C 1.35368 * 105.50601 * 179.87914 * 10 9 7 12 12 N 1.35037 * 107.22511 * 0.38465 * 11 10 9 13 13 C 1.46499 * 124.88098 * 179.71216 * 12 11 10 14 14 C 1.53003 * 109.46772 * 125.01178 * 13 12 11 15 15 N 1.28464 * 110.23132 * 359.74176 * 12 11 10 16 16 C 1.46901 * 110.99861 * 295.22807 * 3 2 1 17 17 C 1.50703 * 109.47584 * 288.24258 * 16 3 2 18 18 O 1.21300 * 119.99226 * 354.29381 * 17 16 3 19 19 N 1.34770 * 120.00673 * 174.30139 * 17 16 3 20 20 C 1.37088 * 120.00397 * 179.97438 * 19 17 16 21 21 H 1.08002 * 120.00257 * 0.02562 * 20 19 17 22 22 C 1.38946 * 120.00319 * 179.97438 * 20 19 17 23 23 N 1.31413 * 120.00197 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00336 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.46840 * 0.02562 * 24 22 20 26 26 H 1.48495 * 109.47274 * 120.00333 * 24 22 20 27 27 H 1.48501 * 109.46894 * 240.00279 * 24 22 20 28 28 H 1.09000 * 109.46989 * 299.98680 * 1 2 3 29 29 H 1.08996 * 109.47131 * 59.98653 * 1 2 3 30 30 H 1.09005 * 109.47258 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46787 * 239.99684 * 2 1 3 32 32 H 1.09003 * 109.46701 * 120.00131 * 2 1 3 33 33 H 1.08995 * 109.47150 * 306.05121 * 4 3 2 34 34 H 1.09004 * 109.47252 * 186.04500 * 4 3 2 35 35 H 1.09001 * 109.47512 * 59.99758 * 5 4 3 36 36 H 1.09005 * 109.47087 * 299.99335 * 5 4 3 37 37 H 0.96995 * 119.99912 * 359.97438 * 6 5 4 38 38 H 1.08000 * 127.24908 * 0.02562 * 10 9 7 39 39 H 1.07996 * 126.38652 * 180.10583 * 11 10 9 40 40 H 1.08998 * 109.46966 * 245.01438 * 13 12 11 41 41 H 1.08997 * 109.47144 * 5.01644 * 13 12 11 42 42 H 1.09004 * 109.46801 * 179.97438 * 14 13 12 43 43 H 1.08998 * 109.47281 * 299.99427 * 14 13 12 44 44 H 1.08997 * 109.46906 * 60.00320 * 14 13 12 45 45 H 1.09002 * 109.47259 * 48.24031 * 16 3 2 46 46 H 1.08998 * 109.47347 * 168.23362 * 16 3 2 47 47 H 0.97008 * 119.99600 * 359.97438 * 19 17 16 48 48 H 0.97001 * 120.00909 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5328 2.1155 1.1777 5 6 2.1476 1.5121 2.4422 6 7 1.6615 2.2403 3.6169 7 6 2.0719 1.8816 4.8495 8 8 2.8457 0.9541 4.9866 9 6 1.5772 2.6119 6.0343 10 6 1.9062 2.3471 7.3847 11 6 1.2242 3.2644 8.1099 12 7 0.5246 4.0230 7.2389 13 6 -0.3550 5.1331 7.6134 14 6 0.0732 6.3975 6.8657 15 7 0.7407 3.6307 6.0349 16 6 1.6441 2.0761 -1.2406 17 6 2.4640 1.5367 -2.3843 18 8 3.3516 0.7381 -2.1704 19 7 2.2113 1.9417 -3.6446 20 6 2.9575 1.4514 -4.6849 21 1 3.7477 0.7402 -4.4945 22 6 2.6965 1.8686 -5.9843 23 7 1.7347 2.7335 -6.2161 24 14 3.7129 1.1999 -7.4019 25 1 4.7252 0.2476 -6.8791 26 1 2.8229 0.4983 -8.3613 27 1 4.3982 2.3221 -8.0921 28 1 -0.3633 0.5136 0.8901 29 1 -0.3633 0.5140 -0.8898 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 0.4468 2.0388 1.2295 34 1 1.8197 3.1641 1.0990 35 1 3.2336 1.5888 2.3904 36 1 1.8606 0.4635 2.5210 37 1 1.0444 2.9806 3.5075 38 1 2.5648 1.5770 7.7582 39 1 1.2340 3.3673 9.1849 40 1 -1.3836 4.8862 7.3505 41 1 -0.2858 5.3051 8.6874 42 1 -0.5815 7.2233 7.1439 43 1 1.1018 6.6443 7.1287 44 1 0.0040 6.2254 5.7916 45 1 0.5858 1.9107 -1.4426 46 1 1.8304 3.1445 -1.1321 47 1 1.5012 2.5802 -3.8157 48 1 1.5527 3.0251 -7.1232 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663431214.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:23 Heat of formation + Delta-G solvation = -10.306914 kcal Electronic energy + Delta-G solvation = -28305.301215 eV Core-core repulsion = 24203.381812 eV Total energy + Delta-G solvation = -4101.919403 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.60585 -40.74651 -40.28203 -38.59682 -36.01310 -35.67719 -35.44122 -33.25218 -31.96183 -31.47496 -31.17751 -30.31783 -27.83365 -26.17312 -25.70700 -24.51082 -23.07333 -22.34560 -21.73674 -20.99998 -20.53801 -19.75907 -18.84701 -17.78845 -17.58075 -17.34682 -17.23390 -16.92378 -16.52058 -16.43587 -15.96187 -15.64688 -15.37346 -15.18088 -14.97907 -14.66622 -14.56972 -14.43919 -14.07516 -13.90963 -13.66179 -13.43477 -13.27698 -13.05491 -12.99872 -12.94631 -12.76659 -12.52441 -12.38700 -12.29607 -12.17012 -12.09648 -11.83526 -11.67751 -11.42180 -11.35044 -10.35068 -10.29626 -10.13142 -9.97370 -9.95026 -9.15486 -8.44695 -5.92708 0.52325 1.21722 1.37024 1.41907 1.54614 1.56307 2.01258 2.10188 2.31438 2.35586 2.89717 3.22281 3.34071 3.45852 3.79398 3.93603 3.99086 4.01336 4.07904 4.14746 4.28147 4.29369 4.32017 4.39586 4.40254 4.49415 4.58205 4.60186 4.74190 4.78061 4.82287 4.85752 4.87083 4.90929 5.01756 5.11555 5.25420 5.29508 5.33939 5.39854 5.43308 5.88809 5.91779 6.09284 6.18037 6.40685 6.64180 6.91396 7.14044 7.16416 7.60462 8.17397 8.72982 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.021908 B = 0.001776 C = 0.001707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.750924 B =15766.172508 C =16396.223860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.049 3.951 3 N -0.531 5.531 4 C 0.049 3.951 5 C 0.131 3.869 6 N -0.703 5.703 7 C 0.600 3.400 8 O -0.575 6.575 9 C -0.049 4.049 10 C -0.207 4.207 11 C 0.001 3.999 12 N -0.276 5.276 13 C 0.107 3.893 14 C -0.166 4.166 15 N -0.269 5.269 16 C 0.056 3.944 17 C 0.442 3.558 18 O -0.616 6.616 19 N -0.576 5.576 20 C -0.330 4.330 21 H 0.076 0.924 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.991 3.009 25 H -0.275 1.275 26 H -0.271 1.271 27 H -0.271 1.271 28 H 0.074 0.926 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.416 0.584 38 H 0.160 0.840 39 H 0.227 0.773 40 H 0.105 0.895 41 H 0.142 0.858 42 H 0.103 0.897 43 H 0.054 0.946 44 H 0.053 0.947 45 H 0.077 0.923 46 H 0.112 0.888 47 H 0.396 0.604 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.451 9.287 30.893 34.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.079 4.079 3 N -0.255 5.255 4 C -0.078 4.078 5 C 0.007 3.993 6 N -0.355 5.355 7 C 0.386 3.614 8 O -0.453 6.453 9 C -0.207 4.207 10 C -0.235 4.235 11 C -0.141 4.141 12 N -0.065 5.065 13 C -0.011 4.011 14 C -0.224 4.224 15 N -0.107 5.107 16 C -0.075 4.075 17 C 0.230 3.770 18 O -0.501 6.501 19 N -0.214 5.214 20 C -0.459 4.459 21 H 0.094 0.906 22 C -0.213 4.213 23 N -0.562 5.562 24 Si 0.815 3.185 25 H -0.200 1.200 26 H -0.196 1.196 27 H -0.196 1.196 28 H 0.093 0.907 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.112 0.888 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.253 0.747 38 H 0.177 0.823 39 H 0.244 0.756 40 H 0.123 0.877 41 H 0.160 0.840 42 H 0.121 0.879 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.094 0.906 46 H 0.130 0.870 47 H 0.230 0.770 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.569 8.960 30.274 33.294 hybrid contribution -0.233 -0.362 -0.812 0.920 sum -10.802 8.598 29.461 32.536 Atomic orbital electron populations 1.22359 0.96501 1.03218 1.02198 1.22145 0.93868 0.89579 1.02284 1.61529 1.60598 1.02508 1.00826 1.22253 0.98863 0.98667 0.88058 1.21158 0.99022 0.95867 0.83269 1.45615 1.48517 1.36416 1.04909 1.17210 0.79774 0.82096 0.82327 1.90780 1.36980 1.31022 1.86487 1.21780 1.04220 0.99599 0.95091 1.22008 1.06301 1.04164 0.91040 1.23487 0.97124 0.93989 0.99541 1.46134 1.32856 1.25136 1.02416 1.22485 0.92960 0.82374 1.03238 1.22071 1.02631 0.96776 1.00944 1.73372 1.17349 1.13326 1.06661 1.21774 0.97779 0.99672 0.88236 1.20835 0.86970 0.84940 0.84287 1.90499 1.36234 1.38707 1.84702 1.41923 1.33073 1.41186 1.05227 1.19664 1.15107 1.24630 0.86528 0.90552 1.25995 0.98139 0.96736 1.00450 1.69672 1.31255 1.32371 1.22928 0.84897 0.77975 0.78151 0.77469 1.20010 1.19603 1.19612 0.90700 0.92903 0.91211 0.93000 0.90258 0.91477 0.88824 0.92367 0.91795 0.74717 0.82261 0.75624 0.87695 0.84047 0.87857 0.92702 0.92798 0.90566 0.87016 0.77034 0.91382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.62 9.26 71.98 0.67 -3.96 16 2 C 0.05 1.58 5.52 86.30 0.48 2.06 16 3 N -0.53 -17.27 4.31 -900.81 -3.88 -21.15 16 4 C 0.05 1.16 4.81 86.30 0.41 1.58 16 5 C 0.13 3.40 5.60 86.38 0.48 3.88 16 6 N -0.70 -16.32 5.55 -466.09 -2.59 -18.91 16 7 C 0.60 16.81 7.82 86.75 0.68 17.48 16 8 O -0.57 -20.45 16.93 -3.93 -0.07 -20.52 16 9 C -0.05 -1.13 7.13 42.45 0.30 -0.82 16 10 C -0.21 -3.85 10.81 22.41 0.24 -3.60 16 11 C 0.00 0.02 11.40 83.54 0.95 0.97 16 12 N -0.28 -3.24 3.41 -347.95 -1.19 -4.43 16 13 C 0.11 0.30 7.12 86.38 0.61 0.91 16 14 C -0.17 -0.74 10.02 71.98 0.72 -0.02 16 15 N -0.27 -5.04 11.36 -48.18 -0.55 -5.59 16 16 C 0.06 1.94 5.34 85.56 0.46 2.40 16 17 C 0.44 21.42 7.36 87.66 0.65 22.07 16 18 O -0.62 -35.10 14.70 -3.09 -0.05 -35.14 16 19 N -0.58 -29.92 5.29 -306.99 -1.62 -31.54 16 20 C -0.33 -19.04 9.68 84.04 0.81 -18.22 16 21 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 22 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 23 N -0.92 -50.09 13.05 21.66 0.28 -49.81 16 24 Si 0.99 43.77 29.55 68.60 2.03 45.80 16 25 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 26 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 27 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 28 H 0.07 1.56 6.26 -2.39 -0.01 1.54 16 29 H 0.05 1.39 6.29 -2.39 -0.02 1.38 16 30 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 31 H 0.05 2.11 6.54 -2.38 -0.02 2.09 16 32 H 0.08 2.41 6.51 -2.39 -0.02 2.40 16 33 H 0.07 1.30 5.97 -2.39 -0.01 1.29 16 34 H 0.09 1.97 7.86 -2.39 -0.02 1.95 16 35 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.06 1.77 6.57 -2.38 -0.02 1.76 16 37 H 0.42 7.66 8.20 -92.71 -0.76 6.90 16 38 H 0.16 2.88 8.06 -2.91 -0.02 2.85 16 39 H 0.23 0.08 8.06 -2.91 -0.02 0.06 16 40 H 0.10 0.13 8.14 -2.39 -0.02 0.12 16 41 H 0.14 -0.63 8.04 -2.39 -0.02 -0.65 16 42 H 0.10 -0.01 8.14 -2.39 -0.02 -0.03 16 43 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 44 H 0.05 0.49 8.08 -2.39 -0.02 0.47 16 45 H 0.08 2.31 5.97 -2.39 -0.01 2.30 16 46 H 0.11 3.33 7.81 -2.39 -0.02 3.31 16 47 H 0.40 19.40 7.90 -92.70 -0.73 18.67 16 48 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 Total: -1.00 -81.69 397.14 -0.18 -81.87 By element: Atomic # 1 Polarization: 35.48 SS G_CDS: -0.49 Total: 34.99 kcal Atomic # 6 Polarization: 16.50 SS G_CDS: 7.94 Total: 24.44 kcal Atomic # 7 Polarization: -121.89 SS G_CDS: -9.54 Total: -131.43 kcal Atomic # 8 Polarization: -55.55 SS G_CDS: -0.11 Total: -55.66 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -81.69 -0.18 -81.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663431214.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.559 kcal (2) G-P(sol) polarization free energy of solvation -81.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds