Wall clock time and date at job start Tue Mar 31 2020 20:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.47114 * 2 1 4 4 C 1.35404 * 126.43743 * 265.14036 * 3 2 1 5 5 C 1.35558 * 107.15947 * 180.24217 * 4 3 2 6 6 N 1.33099 * 108.35197 * 359.76792 * 5 4 3 7 7 C 1.31625 * 109.09449 * 0.02562 * 6 5 4 8 8 C 1.47410 * 125.86382 * 179.97438 * 7 6 5 9 9 O 1.21601 * 119.99568 * 180.02562 * 8 7 6 10 10 N 1.34773 * 119.99968 * 0.02562 * 8 7 6 11 11 C 1.46496 * 119.99934 * 180.02562 * 10 8 7 12 12 C 1.52994 * 109.47355 * 180.02562 * 11 10 8 13 13 H 1.08993 * 109.47392 * 54.99840 * 12 11 10 14 14 C 1.53003 * 109.46945 * 294.99481 * 12 11 10 15 15 C 1.53006 * 109.47452 * 174.99751 * 12 11 10 16 16 N 1.46898 * 109.47138 * 184.99841 * 15 12 11 17 17 C 1.46906 * 110.99888 * 180.02562 * 16 15 12 18 18 C 1.50699 * 109.47140 * 179.97438 * 17 16 15 19 19 O 1.21289 * 119.99678 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99614 * 180.02562 * 18 17 16 21 21 C 1.37097 * 119.99518 * 180.02562 * 20 18 17 22 22 H 1.07996 * 120.00466 * 359.97438 * 21 20 18 23 23 C 1.38949 * 120.00085 * 179.97438 * 21 20 18 24 24 N 1.31416 * 119.99807 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00303 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46680 * 60.00313 * 25 23 21 27 27 H 1.48496 * 109.46939 * 179.97438 * 25 23 21 28 28 H 1.48492 * 109.47298 * 300.00205 * 25 23 21 29 29 H 1.08999 * 109.47049 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47397 * 300.00118 * 1 2 3 31 31 H 1.09004 * 109.47092 * 60.00237 * 1 2 3 32 32 H 1.08998 * 109.47397 * 239.99881 * 2 1 3 33 33 H 1.09004 * 109.47092 * 119.99763 * 2 1 3 34 34 H 1.07996 * 126.42008 * 359.97438 * 4 3 2 35 35 H 1.08004 * 125.82867 * 179.75039 * 5 4 3 36 36 H 0.97001 * 120.00253 * 0.02562 * 10 8 7 37 37 H 1.08997 * 109.47613 * 59.99832 * 11 10 8 38 38 H 1.09003 * 109.47151 * 300.00236 * 11 10 8 39 39 H 1.09000 * 109.46878 * 60.00403 * 14 12 11 40 40 H 1.08999 * 109.47096 * 180.02562 * 14 12 11 41 41 H 1.08996 * 109.47132 * 299.99905 * 14 12 11 42 42 H 1.08997 * 109.46770 * 64.99788 * 15 12 11 43 43 H 1.08995 * 109.47019 * 305.00001 * 15 12 11 44 44 H 1.00901 * 111.00121 * 56.04666 * 16 15 12 45 45 H 1.09004 * 109.47040 * 299.99934 * 17 16 15 46 46 H 1.09000 * 109.47033 * 59.99886 * 17 16 15 47 47 H 0.96996 * 120.00269 * 359.97438 * 20 18 17 48 48 H 0.97002 * 120.00022 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3734 2.1087 -1.0854 5 6 2.7694 3.3259 -0.6390 6 7 2.6542 3.3438 0.6869 7 6 2.1990 2.1783 1.0953 8 6 1.9344 1.7966 2.4943 9 8 1.5130 0.6855 2.7520 10 7 2.1596 2.6792 3.4877 11 6 1.8972 2.2996 4.8781 12 6 2.2327 3.4741 5.7994 13 1 1.6803 4.3571 5.4783 14 6 3.7344 3.7603 5.7346 15 6 1.8421 3.1229 7.2365 16 7 2.0527 4.2919 8.1007 17 6 1.6878 3.9909 9.4916 18 6 1.9172 5.2107 10.3463 19 8 2.3423 6.2305 9.8460 20 7 1.6500 5.1682 11.6666 21 6 1.8581 6.2780 12.4441 22 1 2.2366 7.1861 11.9988 23 6 1.5822 6.2345 13.8053 24 7 1.1211 5.1296 14.3472 25 14 1.8665 7.7464 14.8648 26 1 1.0288 8.8659 14.3646 27 1 1.4971 7.4423 16.2706 28 1 3.2987 8.1332 14.8014 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 2.3501 1.7793 -2.1137 35 1 3.1189 4.1419 -1.2542 36 1 2.4954 3.5656 3.2821 37 1 2.5147 1.4415 5.1433 38 1 0.8449 2.0387 4.9912 39 1 4.0126 4.0106 4.7108 40 1 3.9735 4.5968 6.3913 41 1 4.2867 2.8773 6.0557 42 1 2.4580 2.2953 7.5884 43 1 0.7919 2.8329 7.2670 44 1 1.5422 5.0919 7.7577 45 1 0.6365 3.7067 9.5381 46 1 2.3029 3.1694 9.8589 47 1 1.3097 4.3527 12.0666 48 1 0.9288 5.0991 15.2975 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666540687.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:47 Heat of formation + Delta-G solvation = -43.860073 kcal Electronic energy + Delta-G solvation = -27853.206422 eV Core-core repulsion = 23749.832045 eV Total energy + Delta-G solvation = -4103.374377 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.28829 -40.55787 -40.13148 -38.27681 -36.40139 -35.98469 -35.52026 -33.49999 -33.15862 -31.39192 -30.65971 -28.81203 -27.70257 -26.59492 -25.21104 -24.53444 -23.43749 -22.27994 -21.68883 -21.14066 -20.69568 -19.88002 -18.82545 -17.83593 -17.41707 -17.14205 -16.94506 -16.79250 -16.50490 -16.11240 -15.98286 -15.59923 -15.35402 -15.29486 -15.14633 -14.76729 -14.69389 -14.44212 -14.35492 -13.93235 -13.62839 -13.53352 -13.39815 -13.15815 -13.02824 -12.98757 -12.82942 -12.42485 -12.34980 -12.12286 -12.02575 -11.96801 -11.72997 -11.49100 -11.40232 -11.17835 -10.85157 -10.33205 -10.25798 -10.00628 -9.51557 -9.27868 -8.45650 -5.94538 0.31370 1.40717 1.41461 1.42517 1.53465 1.61562 2.06824 2.22828 2.30989 2.35634 2.95175 3.21668 3.29970 3.53444 3.73331 3.82909 3.86106 3.98750 4.03942 4.05590 4.33704 4.34315 4.40687 4.47611 4.48814 4.50184 4.59480 4.62760 4.70225 4.74818 4.78793 4.83437 4.96138 5.08246 5.11715 5.21609 5.24186 5.36880 5.41533 5.51990 5.65916 5.89952 5.92258 6.11713 6.28442 6.43307 6.61254 6.80359 7.03671 7.13455 7.57485 8.12849 8.71442 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.033453 B = 0.001496 C = 0.001452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.789698 B =18717.557803 C =19276.645973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.092 3.908 3 N -0.414 5.414 4 C -0.008 4.008 5 C -0.049 4.049 6 N -0.467 5.467 7 C 0.101 3.899 8 C 0.602 3.398 9 O -0.564 6.564 10 N -0.696 5.696 11 C 0.134 3.866 12 C -0.088 4.088 13 H 0.080 0.920 14 C -0.137 4.137 15 C 0.069 3.931 16 N -0.679 5.679 17 C 0.065 3.935 18 C 0.437 3.563 19 O -0.623 6.623 20 N -0.574 5.574 21 C -0.336 4.336 22 H 0.079 0.921 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.994 3.006 26 H -0.272 1.272 27 H -0.270 1.270 28 H -0.272 1.272 29 H 0.095 0.905 30 H 0.037 0.963 31 H 0.069 0.931 32 H 0.129 0.871 33 H 0.091 0.909 34 H 0.226 0.774 35 H 0.201 0.799 36 H 0.416 0.584 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.082 0.918 43 H 0.044 0.956 44 H 0.344 0.656 45 H 0.067 0.933 46 H 0.104 0.896 47 H 0.396 0.604 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.528 -13.406 -32.275 34.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.029 4.029 3 N -0.094 5.094 4 C -0.147 4.147 5 C -0.202 4.202 6 N -0.190 5.190 7 C -0.156 4.156 8 C 0.387 3.613 9 O -0.443 6.443 10 N -0.347 5.347 11 C 0.010 3.990 12 C -0.108 4.108 13 H 0.099 0.901 14 C -0.194 4.194 15 C -0.061 4.061 16 N -0.311 5.311 17 C -0.067 4.067 18 C 0.225 3.775 19 O -0.509 6.509 20 N -0.211 5.211 21 C -0.466 4.466 22 H 0.097 0.903 23 C -0.212 4.212 24 N -0.561 5.561 25 Si 0.817 3.183 26 H -0.197 1.197 27 H -0.195 1.195 28 H -0.198 1.198 29 H 0.114 0.886 30 H 0.056 0.944 31 H 0.088 0.912 32 H 0.147 0.853 33 H 0.109 0.891 34 H 0.242 0.758 35 H 0.217 0.783 36 H 0.253 0.747 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.100 0.900 43 H 0.062 0.938 44 H 0.163 0.837 45 H 0.084 0.916 46 H 0.122 0.878 47 H 0.230 0.770 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.174 -13.258 -31.480 34.158 hybrid contribution -1.014 0.197 0.395 1.106 sum -0.840 -13.060 -31.085 33.728 Atomic orbital electron populations 1.22020 0.93295 1.04240 1.01911 1.22300 0.96494 0.77833 1.06228 1.45523 1.44466 1.13456 1.05968 1.23666 1.03749 0.93063 0.94261 1.23006 1.07662 0.99229 0.90301 1.70146 1.15432 1.18951 1.14465 1.22483 1.13026 0.89593 0.90517 1.16628 0.77638 0.84288 0.82721 1.90778 1.47844 1.21557 1.84148 1.45636 1.65605 1.17407 1.06085 1.21384 1.01561 0.97498 0.78558 1.21209 0.98209 0.97717 0.93627 0.90119 1.21703 0.94268 1.02118 1.01310 1.21949 0.99876 0.92903 0.91340 1.60019 1.63437 1.07282 1.00351 1.21526 1.00785 0.95164 0.89244 1.20905 0.82767 0.90856 0.82981 1.90488 1.51498 1.35311 1.73634 1.41930 1.58174 1.14121 1.06868 1.19647 1.43053 0.93146 0.90720 0.90307 1.26040 0.96199 1.01229 0.97771 1.69670 1.44593 1.27995 1.13840 0.84982 0.78779 0.77519 0.77013 1.19698 1.19479 1.19764 0.88634 0.94424 0.91243 0.85333 0.89067 0.75781 0.78261 0.74677 0.90849 0.90979 0.92464 0.92681 0.92693 0.89998 0.93767 0.83732 0.91553 0.87824 0.76973 0.91312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 10.23 71.98 0.74 -0.89 16 2 C 0.09 0.97 6.18 86.38 0.53 1.50 16 3 N -0.41 -6.18 2.76 -516.43 -1.42 -7.60 16 4 C -0.01 -0.08 11.53 83.52 0.96 0.88 16 5 C -0.05 -0.69 11.85 83.88 0.99 0.31 16 6 N -0.47 -9.73 10.90 -189.53 -2.06 -11.80 16 7 C 0.10 2.13 7.79 136.28 1.06 3.19 16 8 C 0.60 13.80 7.81 86.66 0.68 14.48 16 9 O -0.56 -14.75 14.50 -4.03 -0.06 -14.81 16 10 N -0.70 -13.78 5.28 -466.42 -2.46 -16.24 16 11 C 0.13 2.47 5.06 86.38 0.44 2.91 16 12 C -0.09 -1.70 2.57 -10.79 -0.03 -1.73 16 13 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 14 C -0.14 -2.88 8.95 71.98 0.64 -2.24 16 15 C 0.07 1.50 5.07 86.31 0.44 1.94 16 16 N -0.68 -20.70 5.58 -517.92 -2.89 -23.58 16 17 C 0.07 2.21 6.17 85.56 0.53 2.74 16 18 C 0.44 20.90 7.82 87.66 0.69 21.59 16 19 O -0.62 -34.69 15.78 -3.06 -0.05 -34.74 16 20 N -0.57 -29.67 5.29 -306.99 -1.62 -31.30 16 21 C -0.34 -19.27 9.68 84.04 0.81 -18.46 16 22 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 23 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 24 N -0.92 -49.94 13.05 21.66 0.28 -49.66 16 25 Si 0.99 43.23 29.55 68.60 2.03 45.26 16 26 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 27 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 28 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 29 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.04 0.63 7.84 -2.39 -0.02 0.61 16 31 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 32 H 0.13 0.41 8.13 -2.39 -0.02 0.39 16 33 H 0.09 1.35 6.64 -2.38 -0.02 1.33 16 34 H 0.23 0.09 8.06 -2.91 -0.02 0.07 16 35 H 0.20 1.63 8.06 -2.91 -0.02 1.61 16 36 H 0.42 7.77 7.33 -92.71 -0.68 7.09 16 37 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.06 1.08 7.18 -2.39 -0.02 1.06 16 40 H 0.05 1.44 7.75 -2.39 -0.02 1.42 16 41 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.34 11.06 8.43 -89.69 -0.76 10.31 16 45 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 46 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 47 H 0.40 19.44 7.90 -92.71 -0.73 18.70 16 48 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -75.41 404.42 -0.48 -75.89 By element: Atomic # 1 Polarization: 43.74 SS G_CDS: -1.17 Total: 42.57 kcal Atomic # 6 Polarization: 17.05 SS G_CDS: 8.95 Total: 26.00 kcal Atomic # 7 Polarization: -130.00 SS G_CDS: -10.18 Total: -140.18 kcal Atomic # 8 Polarization: -49.44 SS G_CDS: -0.11 Total: -49.55 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -75.41 -0.48 -75.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666540687.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.030 kcal (2) G-P(sol) polarization free energy of solvation -75.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds