Wall clock time and date at job start Tue Mar 31 2020 20:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.47122 * 2 1 4 4 C 1.35403 * 126.43706 * 265.16119 * 3 2 1 5 5 C 1.35561 * 107.16152 * 180.21912 * 4 3 2 6 6 N 1.33102 * 108.34871 * 359.77864 * 5 4 3 7 7 C 1.31614 * 109.09585 * 359.97438 * 6 5 4 8 8 C 1.47406 * 125.86580 * 179.97438 * 7 6 5 9 9 O 1.21606 * 120.00423 * 180.02562 * 8 7 6 10 10 N 1.34777 * 119.99961 * 0.02562 * 8 7 6 11 11 C 1.46506 * 119.99873 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.46684 * 180.02562 * 11 10 8 13 13 H 1.08994 * 109.47465 * 305.00253 * 12 11 10 14 14 C 1.53002 * 109.47069 * 65.00525 * 12 11 10 15 15 C 1.53003 * 109.47015 * 184.99978 * 12 11 10 16 16 N 1.46894 * 109.47533 * 175.00007 * 15 12 11 17 17 C 1.46897 * 111.00411 * 180.02562 * 16 15 12 18 18 C 1.50697 * 109.47263 * 180.02562 * 17 16 15 19 19 O 1.21297 * 120.00271 * 359.97438 * 18 17 16 20 20 N 1.34780 * 119.99865 * 180.02562 * 18 17 16 21 21 C 1.37101 * 119.99821 * 179.97438 * 20 18 17 22 22 H 1.07999 * 120.00103 * 0.02562 * 21 20 18 23 23 C 1.38947 * 119.99997 * 179.97438 * 21 20 18 24 24 N 1.31414 * 119.99919 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00073 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47218 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47160 * 120.00401 * 25 23 21 28 28 H 1.48499 * 109.47427 * 240.00274 * 25 23 21 29 29 H 1.09000 * 109.46777 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.46771 * 300.00094 * 1 2 3 31 31 H 1.09001 * 109.47164 * 59.99682 * 1 2 3 32 32 H 1.08996 * 109.47077 * 239.99879 * 2 1 3 33 33 H 1.09000 * 109.47344 * 119.99797 * 2 1 3 34 34 H 1.08002 * 126.42550 * 359.97438 * 4 3 2 35 35 H 1.07995 * 125.82950 * 179.76865 * 5 4 3 36 36 H 0.96995 * 120.00018 * 0.27663 * 10 8 7 37 37 H 1.09000 * 109.47212 * 300.00355 * 11 10 8 38 38 H 1.09001 * 109.46577 * 60.00430 * 11 10 8 39 39 H 1.09001 * 109.46743 * 179.97438 * 14 12 11 40 40 H 1.09000 * 109.47048 * 299.99452 * 14 12 11 41 41 H 1.08994 * 109.47199 * 59.99565 * 14 12 11 42 42 H 1.09005 * 109.47422 * 295.00404 * 15 12 11 43 43 H 1.09005 * 109.46949 * 55.00013 * 15 12 11 44 44 H 1.00905 * 111.00040 * 56.04663 * 16 15 12 45 45 H 1.09004 * 109.47068 * 300.00095 * 17 16 15 46 46 H 1.08995 * 109.47275 * 59.99618 * 17 16 15 47 47 H 0.96996 * 120.00307 * 359.97438 * 20 18 17 48 48 H 0.96996 * 120.00132 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3730 2.1088 -1.0854 5 6 2.7686 3.3262 -0.6391 6 7 2.6538 3.3440 0.6868 7 6 2.1982 2.1787 1.0952 8 6 1.9338 1.7969 2.4942 9 8 1.5119 0.6859 2.7520 10 7 2.1598 2.6792 3.4877 11 6 1.8965 2.2999 4.8781 12 6 2.2331 3.4741 5.7994 13 1 3.2607 3.7917 5.6226 14 6 1.2828 4.6378 5.5104 15 6 2.0776 3.0388 7.2579 16 7 2.5149 4.1265 8.1430 17 6 2.3800 3.7433 9.5546 18 6 2.8365 4.8817 10.4301 19 8 3.2355 5.9110 9.9276 20 7 2.8024 4.7558 11.7716 21 6 3.2182 5.7913 12.5681 22 1 3.5727 6.7081 12.1206 23 6 3.1825 5.6618 13.9510 24 7 2.7507 4.5464 14.4955 25 14 3.7484 7.0729 15.0363 26 1 4.1841 8.2085 14.1844 27 1 2.6266 7.5091 15.9061 28 1 4.8838 6.6232 15.8812 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 2.3494 1.7796 -2.1138 35 1 3.1176 4.1423 -1.2543 36 1 2.4925 3.5667 3.2818 37 1 0.8439 2.0402 4.9908 38 1 2.5131 1.4411 5.1433 39 1 1.5224 5.4742 6.1672 40 1 1.3936 4.9480 4.4714 41 1 0.2552 4.3203 5.6872 42 1 1.0317 2.8058 7.4581 43 1 2.6881 2.1544 7.4402 44 1 2.0076 4.9769 7.9488 45 1 1.3363 3.5149 9.7710 46 1 2.9928 2.8639 9.7525 47 1 2.4836 3.9326 12.1735 48 1 2.7261 4.4558 15.4609 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666540688.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:50 Heat of formation + Delta-G solvation = -18.457804 kcal Electronic energy + Delta-G solvation = -27858.857773 eV Core-core repulsion = 23756.584921 eV Total energy + Delta-G solvation = -4102.272852 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.68857 -39.73118 -38.36934 -37.25738 -35.65186 -34.77704 -33.84587 -32.39219 -31.18236 -30.81671 -30.04945 -27.38657 -27.00209 -25.08296 -24.43068 -23.52681 -22.58810 -21.70156 -20.73278 -20.00233 -19.19951 -18.19354 -17.85121 -16.78700 -16.52410 -16.30694 -15.91136 -15.64840 -15.27240 -15.03846 -14.74835 -14.51206 -14.25546 -14.23005 -14.15527 -13.90722 -13.68730 -13.41735 -13.12585 -12.96531 -12.77047 -12.60355 -12.55931 -12.04868 -11.85529 -11.56952 -11.52780 -11.18679 -11.07446 -10.94890 -10.88066 -10.65258 -10.48043 -10.32909 -10.23516 -10.20776 -9.50394 -9.45104 -8.93038 -8.44319 -8.04164 -7.94066 -6.40222 -3.80966 0.98725 2.00916 2.22677 2.92284 3.08605 3.17733 3.28237 3.35692 3.92731 3.96198 4.11321 4.16528 4.31133 4.34571 4.48839 4.73065 4.75752 4.76244 4.86484 4.90885 4.98892 5.15071 5.15224 5.24168 5.27135 5.37653 5.42664 5.51008 5.58852 5.62166 5.76325 5.78271 5.81367 5.87767 6.00490 6.02465 6.14684 6.18696 6.23115 6.29515 6.48248 7.05069 7.22842 7.45913 7.57031 7.68413 7.80615 8.08382 8.63040 9.19653 9.56219 10.07637 10.77623 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.034705 B = 0.001492 C = 0.001448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.608770 B =18762.942223 C =19327.492558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.095 3.905 3 N -0.413 5.413 4 C -0.030 4.030 5 C -0.027 4.027 6 N -0.445 5.445 7 C 0.139 3.861 8 C 0.606 3.394 9 O -0.541 6.541 10 N -0.700 5.700 11 C 0.126 3.874 12 C -0.102 4.102 13 H 0.091 0.909 14 C -0.154 4.154 15 C 0.067 3.933 16 N -0.668 5.668 17 C 0.050 3.950 18 C 0.441 3.559 19 O -0.583 6.583 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.104 0.896 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.092 0.908 33 H 0.110 0.890 34 H 0.183 0.817 35 H 0.178 0.822 36 H 0.414 0.586 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.056 0.944 41 H 0.054 0.946 42 H 0.030 0.970 43 H 0.074 0.926 44 H 0.350 0.650 45 H 0.043 0.957 46 H 0.086 0.914 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.052 -10.709 -30.909 33.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.027 4.027 3 N -0.094 5.094 4 C -0.168 4.168 5 C -0.180 4.180 6 N -0.167 5.167 7 C -0.121 4.121 8 C 0.390 3.610 9 O -0.418 6.418 10 N -0.352 5.352 11 C 0.003 3.997 12 C -0.121 4.121 13 H 0.110 0.890 14 C -0.211 4.211 15 C -0.063 4.063 16 N -0.302 5.302 17 C -0.082 4.082 18 C 0.226 3.774 19 O -0.467 6.467 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.111 0.889 33 H 0.128 0.872 34 H 0.200 0.800 35 H 0.195 0.805 36 H 0.250 0.750 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.048 0.952 43 H 0.093 0.907 44 H 0.170 0.830 45 H 0.061 0.939 46 H 0.105 0.895 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.327 -10.567 -30.260 32.343 hybrid contribution -0.900 -0.104 0.195 0.927 sum -5.228 -10.671 -30.065 32.328 Atomic orbital electron populations 1.22069 0.93439 1.03527 1.03037 1.22146 0.96424 0.78680 1.05415 1.45291 1.45088 1.12875 1.06109 1.22950 1.06717 0.94043 0.93117 1.22447 1.07048 0.97604 0.90941 1.70208 1.15087 1.18608 1.12777 1.22638 1.10479 0.88649 0.90298 1.16428 0.78017 0.84512 0.82030 1.90806 1.46617 1.20733 1.83654 1.45670 1.65958 1.17371 1.06156 1.21482 1.01750 0.97741 0.78744 1.21372 1.01795 0.94762 0.94207 0.89030 1.21915 0.98931 0.98397 1.01889 1.21872 0.98335 0.95145 0.90975 1.60075 1.62205 1.05635 1.02279 1.21669 0.99573 0.98500 0.88491 1.19822 0.85227 0.89239 0.83079 1.90523 1.51713 1.30701 1.73796 1.41872 1.57076 1.16989 1.04166 1.19764 1.39464 0.96129 0.87488 0.87850 1.25263 0.97473 0.97954 0.97293 1.69621 1.47023 1.25592 1.12102 0.85796 0.78170 0.80783 0.79569 1.19213 1.20802 1.20754 0.90227 0.91308 0.92260 0.88930 0.87155 0.80031 0.80452 0.74964 0.90994 0.90771 0.91312 0.92480 0.92672 0.95156 0.90738 0.82995 0.93867 0.89547 0.77457 0.91947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.93 10.23 37.16 0.38 -0.55 16 2 C 0.09 0.57 6.18 -4.04 -0.02 0.55 16 3 N -0.41 -3.37 2.76 -114.59 -0.32 -3.69 16 4 C -0.03 -0.19 11.53 -16.93 -0.20 -0.39 16 5 C -0.03 -0.21 11.85 -17.96 -0.21 -0.43 16 6 N -0.45 -4.71 10.89 -11.26 -0.12 -4.84 16 7 C 0.14 1.46 7.78 -154.52 -1.20 0.26 16 8 C 0.61 6.80 7.81 -12.53 -0.10 6.70 16 9 O -0.54 -6.89 14.50 5.27 0.08 -6.81 16 10 N -0.70 -6.86 5.28 -61.39 -0.32 -7.19 16 11 C 0.13 1.20 5.06 -4.04 -0.02 1.18 16 12 C -0.10 -1.02 2.63 -90.62 -0.24 -1.26 16 13 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 14 C -0.15 -1.49 8.84 37.16 0.33 -1.17 16 15 C 0.07 0.79 5.14 -3.83 -0.02 0.77 16 16 N -0.67 -10.62 6.12 -115.06 -0.70 -11.33 16 17 C 0.05 0.89 6.17 -4.98 -0.03 0.86 16 18 C 0.44 10.48 7.82 -10.99 -0.09 10.39 16 19 O -0.58 -15.93 15.78 5.54 0.09 -15.85 16 20 N -0.56 -14.41 5.29 -10.96 -0.06 -14.47 16 21 C -0.30 -8.40 9.68 -14.93 -0.14 -8.55 16 22 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.66 13.05 55.50 0.72 -23.94 16 25 Si 0.93 21.16 29.55 -169.99 -5.02 16.14 16 26 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 29 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.56 7.84 -51.92 -0.41 0.15 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.09 0.30 8.13 -51.93 -0.42 -0.12 16 33 H 0.11 0.83 6.64 -51.93 -0.35 0.49 16 34 H 0.18 0.47 8.06 -52.49 -0.42 0.04 16 35 H 0.18 0.91 8.06 -52.49 -0.42 0.49 16 36 H 0.41 3.80 7.33 -40.82 -0.30 3.50 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.75 6.68 -51.93 -0.35 0.41 16 40 H 0.06 0.50 7.18 -51.93 -0.37 0.13 16 41 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.35 5.71 6.68 -39.29 -0.26 5.45 16 45 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 47 H 0.39 9.56 7.90 -40.82 -0.32 9.23 16 48 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 402.14 15.07 6.06 6.06 Total: -1.00 -34.24 402.14 -8.62 -42.87 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: -7.36 Total: 14.17 kcal Atomic # 6 Polarization: 10.52 SS G_CDS: -1.66 Total: 8.86 kcal Atomic # 7 Polarization: -64.64 SS G_CDS: -0.80 Total: -65.44 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: 0.16 Total: -22.66 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.24 -8.62 -42.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666540688.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.409 kcal (2) G-P(sol) polarization free energy of solvation -34.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds