Wall clock time and date at job start Tue Mar 31 2020 20:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.47122 * 2 1 4 4 C 1.35403 * 126.43706 * 265.16119 * 3 2 1 5 5 C 1.35561 * 107.16152 * 180.21912 * 4 3 2 6 6 N 1.33102 * 108.34871 * 359.77864 * 5 4 3 7 7 C 1.31614 * 109.09585 * 359.97438 * 6 5 4 8 8 C 1.47406 * 125.86580 * 179.97438 * 7 6 5 9 9 O 1.21606 * 120.00423 * 180.02562 * 8 7 6 10 10 N 1.34777 * 119.99961 * 0.02562 * 8 7 6 11 11 C 1.46506 * 119.99873 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.46684 * 180.02562 * 11 10 8 13 13 H 1.08994 * 109.47465 * 305.00253 * 12 11 10 14 14 C 1.53002 * 109.47069 * 65.00525 * 12 11 10 15 15 C 1.53003 * 109.47015 * 184.99978 * 12 11 10 16 16 N 1.46894 * 109.47533 * 175.00007 * 15 12 11 17 17 C 1.46897 * 111.00411 * 180.02562 * 16 15 12 18 18 C 1.50697 * 109.47263 * 180.02562 * 17 16 15 19 19 O 1.21297 * 120.00271 * 359.97438 * 18 17 16 20 20 N 1.34780 * 119.99865 * 180.02562 * 18 17 16 21 21 C 1.37101 * 119.99821 * 179.97438 * 20 18 17 22 22 H 1.07999 * 120.00103 * 0.02562 * 21 20 18 23 23 C 1.38947 * 119.99997 * 179.97438 * 21 20 18 24 24 N 1.31414 * 119.99919 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00073 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47218 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47160 * 120.00401 * 25 23 21 28 28 H 1.48499 * 109.47427 * 240.00274 * 25 23 21 29 29 H 1.09000 * 109.46777 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.46771 * 300.00094 * 1 2 3 31 31 H 1.09001 * 109.47164 * 59.99682 * 1 2 3 32 32 H 1.08996 * 109.47077 * 239.99879 * 2 1 3 33 33 H 1.09000 * 109.47344 * 119.99797 * 2 1 3 34 34 H 1.08002 * 126.42550 * 359.97438 * 4 3 2 35 35 H 1.07995 * 125.82950 * 179.76865 * 5 4 3 36 36 H 0.96995 * 120.00018 * 0.27663 * 10 8 7 37 37 H 1.09000 * 109.47212 * 300.00355 * 11 10 8 38 38 H 1.09001 * 109.46577 * 60.00430 * 11 10 8 39 39 H 1.09001 * 109.46743 * 179.97438 * 14 12 11 40 40 H 1.09000 * 109.47048 * 299.99452 * 14 12 11 41 41 H 1.08994 * 109.47199 * 59.99565 * 14 12 11 42 42 H 1.09005 * 109.47422 * 295.00404 * 15 12 11 43 43 H 1.09005 * 109.46949 * 55.00013 * 15 12 11 44 44 H 1.00905 * 111.00040 * 56.04663 * 16 15 12 45 45 H 1.09004 * 109.47068 * 300.00095 * 17 16 15 46 46 H 1.08995 * 109.47275 * 59.99618 * 17 16 15 47 47 H 0.96996 * 120.00307 * 359.97438 * 20 18 17 48 48 H 0.96996 * 120.00132 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3730 2.1088 -1.0854 5 6 2.7686 3.3262 -0.6391 6 7 2.6538 3.3440 0.6868 7 6 2.1982 2.1787 1.0952 8 6 1.9338 1.7969 2.4942 9 8 1.5119 0.6859 2.7520 10 7 2.1598 2.6792 3.4877 11 6 1.8965 2.2999 4.8781 12 6 2.2331 3.4741 5.7994 13 1 3.2607 3.7917 5.6226 14 6 1.2828 4.6378 5.5104 15 6 2.0776 3.0388 7.2579 16 7 2.5149 4.1265 8.1430 17 6 2.3800 3.7433 9.5546 18 6 2.8365 4.8817 10.4301 19 8 3.2355 5.9110 9.9276 20 7 2.8024 4.7558 11.7716 21 6 3.2182 5.7913 12.5681 22 1 3.5727 6.7081 12.1206 23 6 3.1825 5.6618 13.9510 24 7 2.7507 4.5464 14.4955 25 14 3.7484 7.0729 15.0363 26 1 4.1841 8.2085 14.1844 27 1 2.6266 7.5091 15.9061 28 1 4.8838 6.6232 15.8812 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 2.3494 1.7796 -2.1138 35 1 3.1176 4.1423 -1.2543 36 1 2.4925 3.5667 3.2818 37 1 0.8439 2.0402 4.9908 38 1 2.5131 1.4411 5.1433 39 1 1.5224 5.4742 6.1672 40 1 1.3936 4.9480 4.4714 41 1 0.2552 4.3203 5.6872 42 1 1.0317 2.8058 7.4581 43 1 2.6881 2.1544 7.4402 44 1 2.0076 4.9769 7.9488 45 1 1.3363 3.5149 9.7710 46 1 2.9928 2.8639 9.7525 47 1 2.4836 3.9326 12.1735 48 1 2.7261 4.4558 15.4609 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666540688.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:50 Heat of formation + Delta-G solvation = -44.076919 kcal Electronic energy + Delta-G solvation = -27859.968701 eV Core-core repulsion = 23756.584921 eV Total energy + Delta-G solvation = -4103.383780 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.28789 -40.56460 -40.14450 -38.33766 -36.40552 -35.98849 -35.52238 -33.49209 -33.15133 -31.39193 -30.66181 -28.78869 -27.83178 -26.61106 -25.24608 -24.57058 -23.43024 -22.27382 -21.57010 -21.15779 -20.66514 -19.90058 -18.82889 -17.95723 -17.40176 -17.15728 -17.01054 -16.87265 -16.46380 -16.10110 -15.96010 -15.56024 -15.45632 -15.37450 -15.01469 -14.75636 -14.67590 -14.43284 -14.33648 -13.94764 -13.65188 -13.55758 -13.46151 -13.33238 -13.07673 -13.00968 -12.79475 -12.40407 -12.34214 -12.12310 -12.08230 -11.85794 -11.77350 -11.50939 -11.40701 -11.17865 -10.85063 -10.34319 -10.25664 -10.01092 -9.51521 -9.30800 -8.46488 -5.95271 0.31469 1.37122 1.41540 1.42529 1.56789 1.61617 2.05586 2.22848 2.30686 2.35726 2.94920 3.20887 3.30002 3.53606 3.73339 3.82354 3.89538 3.93439 3.98759 4.04403 4.33900 4.33962 4.40691 4.47695 4.48008 4.52245 4.57140 4.58983 4.68988 4.73723 4.78939 4.79303 4.94053 5.00027 5.11738 5.21094 5.23908 5.32288 5.39604 5.41662 5.65995 5.89687 5.92332 6.11389 6.28612 6.42988 6.60519 6.80426 7.03754 7.13010 7.56657 8.11952 8.71132 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.034705 B = 0.001492 C = 0.001448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.608770 B =18762.942223 C =19327.492558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.092 3.908 3 N -0.414 5.414 4 C -0.008 4.008 5 C -0.049 4.049 6 N -0.467 5.467 7 C 0.101 3.899 8 C 0.602 3.398 9 O -0.564 6.564 10 N -0.696 5.696 11 C 0.134 3.866 12 C -0.090 4.090 13 H 0.083 0.917 14 C -0.151 4.151 15 C 0.068 3.932 16 N -0.683 5.683 17 C 0.064 3.936 18 C 0.437 3.563 19 O -0.623 6.623 20 N -0.573 5.573 21 C -0.335 4.335 22 H 0.079 0.921 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.994 3.006 26 H -0.274 1.274 27 H -0.270 1.270 28 H -0.271 1.271 29 H 0.095 0.905 30 H 0.037 0.963 31 H 0.069 0.931 32 H 0.128 0.872 33 H 0.091 0.909 34 H 0.226 0.774 35 H 0.201 0.799 36 H 0.416 0.584 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.054 0.946 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.045 0.955 43 H 0.082 0.918 44 H 0.345 0.655 45 H 0.067 0.933 46 H 0.105 0.895 47 H 0.397 0.603 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.356 -11.654 -32.574 35.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.029 4.029 3 N -0.094 5.094 4 C -0.147 4.147 5 C -0.202 4.202 6 N -0.190 5.190 7 C -0.156 4.156 8 C 0.387 3.613 9 O -0.443 6.443 10 N -0.347 5.347 11 C 0.011 3.989 12 C -0.109 4.109 13 H 0.101 0.899 14 C -0.208 4.208 15 C -0.061 4.061 16 N -0.317 5.317 17 C -0.068 4.068 18 C 0.225 3.775 19 O -0.510 6.510 20 N -0.211 5.211 21 C -0.464 4.464 22 H 0.097 0.903 23 C -0.213 4.213 24 N -0.561 5.561 25 Si 0.817 3.183 26 H -0.198 1.198 27 H -0.196 1.196 28 H -0.196 1.196 29 H 0.114 0.886 30 H 0.056 0.944 31 H 0.088 0.912 32 H 0.146 0.854 33 H 0.109 0.891 34 H 0.242 0.758 35 H 0.217 0.783 36 H 0.253 0.747 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.063 0.937 43 H 0.101 0.899 44 H 0.165 0.835 45 H 0.085 0.915 46 H 0.123 0.877 47 H 0.231 0.769 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.644 -11.545 -31.914 34.254 hybrid contribution -0.804 0.178 0.577 1.005 sum -5.447 -11.367 -31.337 33.777 Atomic orbital electron populations 1.22019 0.93249 1.04239 1.01927 1.22300 0.96533 0.77829 1.06211 1.45524 1.44478 1.13440 1.05970 1.23667 1.03758 0.93050 0.94263 1.23005 1.07667 0.99234 0.90297 1.70142 1.15399 1.18994 1.14461 1.22479 1.13021 0.89591 0.90520 1.16629 0.77642 0.84285 0.82720 1.90779 1.47836 1.21557 1.84144 1.45640 1.65660 1.17341 1.06102 1.21374 1.01750 0.97267 0.78538 1.21215 1.01386 0.94967 0.93355 0.89871 1.21877 0.99127 0.97745 1.02048 1.21947 0.99236 0.94033 0.90894 1.60073 1.63042 1.06757 1.01791 1.21538 1.00940 0.96029 0.88321 1.20910 0.83487 0.90193 0.82960 1.90490 1.53136 1.32903 1.74458 1.41939 1.57577 1.16683 1.04866 1.19720 1.41612 0.96445 0.88641 0.90321 1.26043 0.96931 1.00406 0.97881 1.69678 1.46898 1.26757 1.12790 0.84859 0.78197 0.77565 0.77632 1.19818 1.19564 1.19624 0.88642 0.94389 0.91228 0.85356 0.89095 0.75779 0.78266 0.74688 0.90853 0.90901 0.92695 0.91691 0.92076 0.93709 0.89933 0.83513 0.91497 0.87722 0.76949 0.91305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 10.23 71.98 0.74 -0.86 16 2 C 0.09 0.97 6.18 86.38 0.53 1.51 16 3 N -0.41 -6.19 2.76 -516.44 -1.42 -7.61 16 4 C -0.01 -0.08 11.53 83.52 0.96 0.88 16 5 C -0.05 -0.69 11.85 83.88 0.99 0.30 16 6 N -0.47 -9.75 10.89 -189.54 -2.06 -11.81 16 7 C 0.10 2.13 7.78 136.28 1.06 3.19 16 8 C 0.60 13.81 7.81 86.66 0.68 14.49 16 9 O -0.56 -14.75 14.50 -4.05 -0.06 -14.81 16 10 N -0.70 -13.81 5.28 -466.38 -2.46 -16.28 16 11 C 0.13 2.49 5.06 86.38 0.44 2.93 16 12 C -0.09 -1.75 2.63 -10.79 -0.03 -1.78 16 13 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 14 C -0.15 -2.87 8.84 71.98 0.64 -2.23 16 15 C 0.07 1.51 5.14 86.31 0.44 1.96 16 16 N -0.68 -21.26 6.12 -517.94 -3.17 -24.43 16 17 C 0.06 2.20 6.17 85.56 0.53 2.73 16 18 C 0.44 21.02 7.82 87.66 0.69 21.70 16 19 O -0.62 -34.96 15.78 -3.08 -0.05 -35.01 16 20 N -0.57 -29.73 5.29 -306.98 -1.62 -31.35 16 21 C -0.33 -19.23 9.68 84.04 0.81 -18.41 16 22 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 23 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 24 N -0.92 -49.95 13.05 21.66 0.28 -49.66 16 25 Si 0.99 43.28 29.55 68.60 2.03 45.31 16 26 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 27 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 28 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 29 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.04 0.63 7.84 -2.38 -0.02 0.61 16 31 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.13 0.42 8.13 -2.39 -0.02 0.40 16 33 H 0.09 1.35 6.64 -2.39 -0.02 1.34 16 34 H 0.23 0.10 8.06 -2.91 -0.02 0.08 16 35 H 0.20 1.64 8.06 -2.91 -0.02 1.62 16 36 H 0.42 7.78 7.33 -92.71 -0.68 7.10 16 37 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.05 1.21 6.68 -2.39 -0.02 1.20 16 40 H 0.06 1.12 7.18 -2.39 -0.02 1.10 16 41 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 43 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 44 H 0.34 11.27 6.68 -89.69 -0.60 10.67 16 45 H 0.07 2.00 8.14 -2.39 -0.02 1.99 16 46 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 47 H 0.40 19.47 7.90 -92.71 -0.73 18.74 16 48 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 Total: -1.00 -75.93 402.14 -0.61 -76.54 By element: Atomic # 1 Polarization: 43.96 SS G_CDS: -1.01 Total: 42.95 kcal Atomic # 6 Polarization: 17.22 SS G_CDS: 8.95 Total: 26.17 kcal Atomic # 7 Polarization: -130.68 SS G_CDS: -10.46 Total: -141.15 kcal Atomic # 8 Polarization: -49.71 SS G_CDS: -0.11 Total: -49.82 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -75.93 -0.61 -76.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666540688.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.462 kcal (2) G-P(sol) polarization free energy of solvation -75.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds