Wall clock time and date at job start Tue Mar 31 2020 20:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47048 * 2 1 4 4 C 1.53000 * 109.46922 * 240.00208 * 2 1 3 5 5 N 1.46911 * 109.46885 * 185.00192 * 4 2 1 6 6 C 1.46905 * 110.99761 * 180.02562 * 5 4 2 7 7 C 1.50705 * 109.46612 * 179.97438 * 6 5 4 8 8 O 1.21291 * 119.99911 * 0.02562 * 7 6 5 9 9 N 1.34773 * 119.99458 * 179.97438 * 7 6 5 10 10 C 1.37101 * 119.99693 * 180.02562 * 9 7 6 11 11 H 1.07999 * 119.99904 * 0.02562 * 10 9 7 12 12 C 1.38952 * 119.99821 * 180.02562 * 10 9 7 13 13 N 1.31408 * 119.99879 * 179.97438 * 12 10 9 14 14 Si 1.86804 * 119.99990 * 359.97438 * 12 10 9 15 15 H 1.48502 * 109.47017 * 90.00512 * 14 12 10 16 16 H 1.48501 * 109.47065 * 210.00126 * 14 12 10 17 17 H 1.48496 * 109.47210 * 330.00196 * 14 12 10 18 18 N 1.46499 * 109.47359 * 120.00011 * 2 1 3 19 19 C 1.46506 * 119.99537 * 59.99712 * 18 2 1 20 20 C 1.34777 * 120.00199 * 240.00361 * 18 2 1 21 21 O 1.21283 * 119.99750 * 359.97438 * 20 18 2 22 22 C 1.50702 * 119.99928 * 180.27479 * 20 18 2 23 23 H 1.08994 * 109.46990 * 59.72065 * 22 20 18 24 24 C 1.52996 * 109.46842 * 299.72137 * 22 20 18 25 25 N 1.46491 * 109.46957 * 179.72354 * 22 20 18 26 26 C 1.34949 * 126.04079 * 84.71308 * 25 22 20 27 27 C 1.35317 * 107.74630 * 179.83901 * 26 25 22 28 28 C 1.39861 * 107.92064 * 0.42197 * 27 26 25 29 29 N 1.30838 * 108.20476 * 359.74064 * 28 27 26 30 30 H 1.09000 * 109.47156 * 300.00199 * 1 2 3 31 31 H 1.08998 * 109.46768 * 59.99970 * 1 2 3 32 32 H 1.08995 * 109.47095 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47347 * 304.99884 * 4 2 1 34 34 H 1.09000 * 109.47615 * 65.00465 * 4 2 1 35 35 H 1.00907 * 110.99392 * 303.95182 * 5 4 2 36 36 H 1.08997 * 109.46797 * 299.99318 * 6 5 4 37 37 H 1.08999 * 109.47011 * 59.99703 * 6 5 4 38 38 H 0.96996 * 120.00088 * 0.02562 * 9 7 6 39 39 H 0.97004 * 119.99935 * 179.97438 * 13 12 10 40 40 H 1.08998 * 109.46921 * 269.99744 * 19 18 2 41 41 H 1.08994 * 109.46996 * 30.00327 * 19 18 2 42 42 H 1.09001 * 109.46578 * 150.00190 * 19 18 2 43 43 H 1.09003 * 109.46851 * 180.02562 * 24 22 20 44 44 H 1.09002 * 109.47575 * 299.99754 * 24 22 20 45 45 H 1.09001 * 109.47551 * 59.99933 * 24 22 20 46 46 H 1.07997 * 126.12494 * 0.02562 * 26 25 22 47 47 H 1.08006 * 126.03762 * 180.16377 * 27 26 25 48 48 H 1.08009 * 125.89876 * 179.71328 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5041 -0.8267 -1.1904 6 6 4.0304 -1.5148 -2.3768 7 6 5.5318 -1.6033 -2.2813 8 8 6.1067 -1.1393 -1.3193 9 7 6.2355 -2.1990 -3.2643 10 6 7.6014 -2.2800 -3.1772 11 1 8.1133 -1.8668 -2.3207 12 6 8.3270 -2.8937 -4.1909 13 7 9.6362 -2.9709 -4.1077 14 14 7.4414 -3.6090 -5.6720 15 1 7.3214 -2.5701 -6.7263 16 1 8.2125 -4.7632 -6.2000 17 1 6.0865 -4.0625 -5.2673 18 7 2.0184 -0.6906 1.1961 19 6 1.6644 -2.0932 1.4279 20 6 2.7932 -0.0356 2.0833 21 8 3.0865 1.1254 1.8912 22 6 3.3007 -0.7479 3.3106 23 1 3.9042 -1.6043 3.0102 24 6 2.1142 -1.2287 4.1483 25 7 4.1188 0.1714 4.1054 26 6 3.6618 1.0560 5.0163 27 6 4.7302 1.7092 5.5289 28 6 5.8786 1.2136 4.9032 29 7 5.5134 0.2917 4.0496 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6054 -1.7197 -1.2952 34 1 1.7517 -0.1583 -2.1370 35 1 3.9280 0.0826 -1.0824 36 1 3.6096 -2.5188 -2.4309 37 1 3.7558 -0.9570 -3.2721 38 1 5.7757 -2.5704 -4.0333 39 1 10.1427 -3.3997 -4.8152 40 1 0.7376 -2.1443 1.9993 41 1 1.5295 -2.5968 0.4708 42 1 2.4629 -2.5819 1.9863 43 1 2.4812 -1.7435 5.0362 44 1 1.5106 -0.3723 4.4488 45 1 1.5053 -1.9127 3.5570 46 1 2.6287 1.2121 5.2895 47 1 4.7008 2.4804 6.2845 48 1 6.8920 1.5364 5.0917 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666859337.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:07 Heat of formation + Delta-G solvation = 36.294884 kcal Electronic energy + Delta-G solvation = -29881.540564 eV Core-core repulsion = 25781.641967 eV Total energy + Delta-G solvation = -4099.898597 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.33736 -40.05011 -38.45018 -36.97304 -35.20319 -34.47825 -33.77759 -31.81479 -31.57816 -30.00323 -29.37074 -27.78075 -27.25636 -25.23360 -24.83423 -23.16568 -22.24095 -21.00118 -20.37992 -19.45115 -19.20238 -18.28570 -17.58549 -17.32807 -16.50425 -16.03792 -15.62243 -15.30375 -14.87432 -14.72666 -14.55376 -14.24868 -14.14408 -13.92775 -13.66691 -13.47395 -13.28916 -13.21974 -12.88977 -12.78947 -12.71828 -12.65282 -12.48022 -12.21284 -12.17545 -11.89127 -11.84806 -11.66272 -11.57519 -11.15219 -11.02718 -10.58573 -10.54483 -10.02445 -9.94884 -9.54590 -9.30348 -8.79927 -8.54429 -8.52063 -8.17470 -8.12118 -6.28054 -3.79400 1.87677 2.34143 2.50594 2.95954 2.97044 3.02959 3.07320 3.15474 3.77339 3.99649 4.11892 4.17350 4.36125 4.59147 4.68959 4.75247 4.82493 4.83779 4.90113 4.98348 5.06204 5.12179 5.20213 5.23542 5.30337 5.32592 5.35512 5.40632 5.47850 5.57577 5.61131 5.66814 5.75662 5.80829 5.82735 5.87606 5.94163 6.05463 6.36159 6.71338 6.97084 7.07865 7.23113 7.54607 7.61162 7.80890 8.05804 8.18186 8.63052 8.98568 9.45448 9.86558 10.85253 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011785 B = 0.002972 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2375.263162 B = 9419.665839 C =11155.158879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.138 3.862 3 H 0.100 0.900 4 C 0.047 3.953 5 N -0.663 5.663 6 C 0.049 3.951 7 C 0.449 3.551 8 O -0.559 6.559 9 N -0.592 5.592 10 C -0.304 4.304 11 H 0.119 0.881 12 C 0.041 3.959 13 N -0.882 5.882 14 Si 0.880 3.120 15 H -0.272 1.272 16 H -0.277 1.277 17 H -0.270 1.270 18 N -0.589 5.589 19 C 0.076 3.924 20 C 0.513 3.487 21 O -0.522 6.522 22 C 0.145 3.855 23 H 0.130 0.870 24 C -0.171 4.171 25 N -0.353 5.353 26 C 0.062 3.938 27 C -0.276 4.276 28 C 0.043 3.957 29 N -0.277 5.277 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.039 0.961 35 H 0.353 0.647 36 H 0.085 0.915 37 H 0.043 0.957 38 H 0.369 0.631 39 H 0.273 0.727 40 H 0.057 0.943 41 H 0.077 0.923 42 H 0.073 0.927 43 H 0.079 0.921 44 H 0.069 0.931 45 H 0.097 0.903 46 H 0.166 0.834 47 H 0.145 0.855 48 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.959 2.300 13.623 27.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.035 3.965 3 H 0.118 0.882 4 C -0.084 4.084 5 N -0.296 5.296 6 C -0.084 4.084 7 C 0.234 3.766 8 O -0.440 6.440 9 N -0.232 5.232 10 C -0.433 4.433 11 H 0.137 0.863 12 C -0.162 4.162 13 N -0.522 5.522 14 Si 0.707 3.293 15 H -0.197 1.197 16 H -0.202 1.202 17 H -0.196 1.196 18 N -0.322 5.322 19 C -0.067 4.067 20 C 0.299 3.701 21 O -0.397 6.397 22 C 0.038 3.962 23 H 0.148 0.852 24 C -0.229 4.229 25 N -0.135 5.135 26 C -0.084 4.084 27 C -0.305 4.305 28 C -0.144 4.144 29 N -0.097 5.097 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.057 0.943 35 H 0.173 0.827 36 H 0.103 0.897 37 H 0.061 0.939 38 H 0.202 0.798 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.096 0.904 42 H 0.092 0.908 43 H 0.098 0.902 44 H 0.088 0.912 45 H 0.115 0.885 46 H 0.183 0.817 47 H 0.163 0.837 48 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -22.876 1.668 13.515 26.622 hybrid contribution -0.873 0.526 -1.556 1.860 sum -23.749 2.193 11.959 26.680 Atomic orbital electron populations 1.22076 0.94399 1.02464 1.02606 1.21107 0.93576 0.98066 0.83773 0.88206 1.22367 0.89678 1.00508 0.95841 1.60033 1.03052 1.27163 1.39371 1.21700 0.95137 0.99858 0.91663 1.19720 0.87946 0.84163 0.84759 1.90611 1.70915 1.50102 1.32339 1.42200 1.07839 1.53194 1.19953 1.19444 0.79529 1.35921 1.08365 0.86307 1.25036 0.95434 0.97714 0.98017 1.69626 1.05060 1.43524 1.33993 0.86666 0.79547 0.79762 0.83345 1.19714 1.20197 1.19551 1.47436 1.50634 1.12130 1.21999 1.21933 1.00109 0.81832 1.02851 1.20546 0.78079 0.87215 0.84290 1.90742 1.56081 1.16907 1.75999 1.21029 0.93036 0.92110 0.89981 0.85200 1.22405 0.96426 1.02981 1.01086 1.48206 1.04876 1.30045 1.30384 1.22330 0.99993 0.92951 0.93106 1.21428 0.91603 1.08223 1.09284 1.23908 1.00099 0.95513 0.94850 1.77555 0.88853 1.21677 1.21624 0.92078 0.91295 0.92059 0.90719 0.94313 0.82726 0.89671 0.93912 0.79795 0.91653 0.92483 0.90414 0.90826 0.90244 0.91191 0.88454 0.81672 0.83739 0.80072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.09 9.19 37.16 0.34 -0.75 16 2 C 0.14 1.43 2.88 -67.93 -0.20 1.23 16 3 H 0.10 1.29 6.90 -51.93 -0.36 0.93 16 4 C 0.05 0.51 4.93 -3.82 -0.02 0.49 16 5 N -0.66 -10.45 5.85 -115.05 -0.67 -11.12 16 6 C 0.05 0.82 6.17 -4.97 -0.03 0.79 16 7 C 0.45 10.50 7.82 -10.98 -0.09 10.41 16 8 O -0.56 -15.77 15.78 5.55 0.09 -15.68 16 9 N -0.59 -14.44 5.09 -10.96 -0.06 -14.49 16 10 C -0.30 -8.83 10.16 -14.93 -0.15 -8.98 16 11 H 0.12 3.98 7.39 -52.49 -0.39 3.59 16 12 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 13 N -0.88 -26.30 13.96 55.50 0.77 -25.52 16 14 Si 0.88 19.65 27.74 -169.99 -4.71 14.93 16 15 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 16 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 17 H -0.27 -5.46 6.52 56.52 0.37 -5.10 16 18 N -0.59 -6.26 2.49 -173.93 -0.43 -6.70 16 19 C 0.08 0.55 7.86 59.85 0.47 1.02 16 20 C 0.51 7.06 7.15 -10.98 -0.08 6.98 16 21 O -0.52 -9.50 15.74 5.55 0.09 -9.41 16 22 C 0.14 1.70 2.92 -69.09 -0.20 1.50 16 23 H 0.13 1.59 7.40 -51.93 -0.38 1.21 16 24 C -0.17 -1.14 8.47 37.16 0.31 -0.82 16 25 N -0.35 -5.02 3.02 -56.00 -0.17 -5.19 16 26 C 0.06 0.74 10.57 -17.22 -0.18 0.55 16 27 C -0.28 -3.30 10.80 -40.02 -0.43 -3.73 16 28 C 0.04 0.60 12.02 -17.37 -0.21 0.40 16 29 N -0.28 -4.75 12.58 30.62 0.39 -4.37 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.35 7.67 -51.93 -0.40 -0.05 16 33 H 0.07 0.70 6.88 -51.93 -0.36 0.34 16 34 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.35 6.45 8.43 -39.29 -0.33 6.12 16 36 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.37 7.86 5.76 -40.82 -0.24 7.63 16 39 H 0.27 7.49 8.31 -40.82 -0.34 7.16 16 40 H 0.06 0.25 6.97 -51.93 -0.36 -0.11 16 41 H 0.08 0.55 6.53 -51.93 -0.34 0.21 16 42 H 0.07 0.52 5.99 -51.93 -0.31 0.21 16 43 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.43 7.16 -51.93 -0.37 0.06 16 45 H 0.10 0.44 4.55 -51.93 -0.24 0.21 16 46 H 0.17 1.38 7.27 -52.49 -0.38 1.00 16 47 H 0.14 1.31 8.06 -52.48 -0.42 0.89 16 48 H 0.18 1.98 8.06 -52.48 -0.42 1.56 16 LS Contribution 391.59 15.07 5.90 5.90 Total: -1.00 -39.57 391.59 -6.37 -45.94 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: -7.00 Total: 15.59 kcal Atomic # 6 Polarization: 10.68 SS G_CDS: -0.56 Total: 10.13 kcal Atomic # 7 Polarization: -67.23 SS G_CDS: -0.17 Total: -67.40 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: 0.17 Total: -25.09 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -4.71 Total: 14.93 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -39.57 -6.37 -45.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666859337.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.234 kcal (2) G-P(sol) polarization free energy of solvation -39.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds