Wall clock time and date at job start Tue Mar 31 2020 20:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47048 * 2 1 4 4 C 1.53000 * 109.46922 * 240.00208 * 2 1 3 5 5 N 1.46911 * 109.46885 * 185.00192 * 4 2 1 6 6 C 1.46905 * 110.99761 * 180.02562 * 5 4 2 7 7 C 1.50705 * 109.46612 * 179.97438 * 6 5 4 8 8 O 1.21291 * 119.99911 * 0.02562 * 7 6 5 9 9 N 1.34773 * 119.99458 * 179.97438 * 7 6 5 10 10 C 1.37101 * 119.99693 * 180.02562 * 9 7 6 11 11 H 1.07999 * 119.99904 * 0.02562 * 10 9 7 12 12 C 1.38952 * 119.99821 * 180.02562 * 10 9 7 13 13 N 1.31408 * 119.99879 * 179.97438 * 12 10 9 14 14 Si 1.86804 * 119.99990 * 359.97438 * 12 10 9 15 15 H 1.48502 * 109.47017 * 90.00512 * 14 12 10 16 16 H 1.48501 * 109.47065 * 210.00126 * 14 12 10 17 17 H 1.48496 * 109.47210 * 330.00196 * 14 12 10 18 18 N 1.46499 * 109.47359 * 120.00011 * 2 1 3 19 19 C 1.46506 * 119.99537 * 59.99712 * 18 2 1 20 20 C 1.34777 * 120.00199 * 240.00361 * 18 2 1 21 21 O 1.21283 * 119.99750 * 359.97438 * 20 18 2 22 22 C 1.50702 * 119.99928 * 180.27479 * 20 18 2 23 23 H 1.08994 * 109.46990 * 59.72065 * 22 20 18 24 24 C 1.52996 * 109.46842 * 299.72137 * 22 20 18 25 25 N 1.46491 * 109.46957 * 179.72354 * 22 20 18 26 26 C 1.34949 * 126.04079 * 84.71308 * 25 22 20 27 27 C 1.35317 * 107.74630 * 179.83901 * 26 25 22 28 28 C 1.39861 * 107.92064 * 0.42197 * 27 26 25 29 29 N 1.30838 * 108.20476 * 359.74064 * 28 27 26 30 30 H 1.09000 * 109.47156 * 300.00199 * 1 2 3 31 31 H 1.08998 * 109.46768 * 59.99970 * 1 2 3 32 32 H 1.08995 * 109.47095 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47347 * 304.99884 * 4 2 1 34 34 H 1.09000 * 109.47615 * 65.00465 * 4 2 1 35 35 H 1.00907 * 110.99392 * 303.95182 * 5 4 2 36 36 H 1.08997 * 109.46797 * 299.99318 * 6 5 4 37 37 H 1.08999 * 109.47011 * 59.99703 * 6 5 4 38 38 H 0.96996 * 120.00088 * 0.02562 * 9 7 6 39 39 H 0.97004 * 119.99935 * 179.97438 * 13 12 10 40 40 H 1.08998 * 109.46921 * 269.99744 * 19 18 2 41 41 H 1.08994 * 109.46996 * 30.00327 * 19 18 2 42 42 H 1.09001 * 109.46578 * 150.00190 * 19 18 2 43 43 H 1.09003 * 109.46851 * 180.02562 * 24 22 20 44 44 H 1.09002 * 109.47575 * 299.99754 * 24 22 20 45 45 H 1.09001 * 109.47551 * 59.99933 * 24 22 20 46 46 H 1.07997 * 126.12494 * 0.02562 * 26 25 22 47 47 H 1.08006 * 126.03762 * 180.16377 * 27 26 25 48 48 H 1.08009 * 125.89876 * 179.71328 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5041 -0.8267 -1.1904 6 6 4.0304 -1.5148 -2.3768 7 6 5.5318 -1.6033 -2.2813 8 8 6.1067 -1.1393 -1.3193 9 7 6.2355 -2.1990 -3.2643 10 6 7.6014 -2.2800 -3.1772 11 1 8.1133 -1.8668 -2.3207 12 6 8.3270 -2.8937 -4.1909 13 7 9.6362 -2.9709 -4.1077 14 14 7.4414 -3.6090 -5.6720 15 1 7.3214 -2.5701 -6.7263 16 1 8.2125 -4.7632 -6.2000 17 1 6.0865 -4.0625 -5.2673 18 7 2.0184 -0.6906 1.1961 19 6 1.6644 -2.0932 1.4279 20 6 2.7932 -0.0356 2.0833 21 8 3.0865 1.1254 1.8912 22 6 3.3007 -0.7479 3.3106 23 1 3.9042 -1.6043 3.0102 24 6 2.1142 -1.2287 4.1483 25 7 4.1188 0.1714 4.1054 26 6 3.6618 1.0560 5.0163 27 6 4.7302 1.7092 5.5289 28 6 5.8786 1.2136 4.9032 29 7 5.5134 0.2917 4.0496 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6054 -1.7197 -1.2952 34 1 1.7517 -0.1583 -2.1370 35 1 3.9280 0.0826 -1.0824 36 1 3.6096 -2.5188 -2.4309 37 1 3.7558 -0.9570 -3.2721 38 1 5.7757 -2.5704 -4.0333 39 1 10.1427 -3.3997 -4.8152 40 1 0.7376 -2.1443 1.9993 41 1 1.5295 -2.5968 0.4708 42 1 2.4629 -2.5819 1.9863 43 1 2.4812 -1.7435 5.0362 44 1 1.5106 -0.3723 4.4488 45 1 1.5053 -1.9127 3.5570 46 1 2.6287 1.2121 5.2895 47 1 4.7008 2.4804 6.2845 48 1 6.8920 1.5364 5.0917 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666859337.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:06 Heat of formation + Delta-G solvation = 3.199326 kcal Electronic energy + Delta-G solvation = -29882.975695 eV Core-core repulsion = 25781.641967 eV Total energy + Delta-G solvation = -4101.333728 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.30897 -41.01013 -40.30324 -38.03246 -36.32339 -35.96903 -35.31063 -33.78661 -32.63297 -31.00505 -30.19059 -29.12103 -27.96868 -26.65089 -25.78946 -24.51600 -23.20183 -21.99842 -21.42105 -21.19028 -20.40473 -20.03777 -18.51678 -18.27115 -17.85436 -17.32533 -16.94603 -16.53658 -16.42510 -15.80063 -15.64819 -15.46002 -15.18122 -15.10319 -14.91940 -14.51057 -14.47930 -14.34711 -14.23597 -14.05412 -13.62688 -13.52307 -13.47483 -13.24340 -13.15553 -13.00313 -12.83178 -12.69434 -12.57031 -12.44534 -12.33304 -11.99352 -11.79667 -11.58596 -11.54796 -11.06486 -10.49761 -10.35876 -10.28613 -9.61324 -9.50504 -9.34779 -8.44089 -6.06046 0.90501 1.27250 1.33857 1.43072 1.45947 1.50996 1.92825 1.97385 2.12221 2.20964 2.69294 3.11791 3.27802 3.39068 3.59511 3.77417 3.84239 3.96111 4.09176 4.12832 4.18886 4.26248 4.32995 4.42127 4.50498 4.53871 4.59086 4.64030 4.70081 4.72931 4.76472 4.81390 4.85938 4.94648 5.09378 5.13237 5.13963 5.29109 5.49411 5.57740 5.73093 5.86728 6.02142 6.09518 6.21963 6.36416 6.56728 6.78750 6.85088 7.10534 7.36083 7.94755 8.74123 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011785 B = 0.002972 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2375.263162 B = 9419.665839 C =11155.158879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.135 3.865 3 H 0.063 0.937 4 C 0.049 3.951 5 N -0.683 5.683 6 C 0.066 3.934 7 C 0.444 3.556 8 O -0.618 6.618 9 N -0.589 5.589 10 C -0.332 4.332 11 H 0.048 0.952 12 C -0.017 4.017 13 N -0.936 5.936 14 Si 0.971 3.029 15 H -0.257 1.257 16 H -0.273 1.273 17 H -0.228 1.228 18 N -0.581 5.581 19 C 0.064 3.936 20 C 0.504 3.496 21 O -0.581 6.581 22 C 0.139 3.861 23 H 0.114 0.886 24 C -0.158 4.158 25 N -0.362 5.362 26 C 0.063 3.937 27 C -0.283 4.283 28 C 0.031 3.969 29 N -0.349 5.349 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.056 0.944 35 H 0.331 0.669 36 H 0.122 0.878 37 H 0.076 0.924 38 H 0.391 0.609 39 H 0.280 0.720 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.070 0.930 43 H 0.088 0.912 44 H 0.080 0.920 45 H 0.123 0.877 46 H 0.203 0.797 47 H 0.174 0.826 48 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.186 0.421 12.196 31.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.032 3.968 3 H 0.082 0.918 4 C -0.080 4.080 5 N -0.314 5.314 6 C -0.067 4.067 7 C 0.232 3.768 8 O -0.503 6.503 9 N -0.231 5.231 10 C -0.462 4.462 11 H 0.066 0.934 12 C -0.215 4.215 13 N -0.576 5.576 14 Si 0.790 3.210 15 H -0.182 1.182 16 H -0.198 1.198 17 H -0.151 1.151 18 N -0.313 5.313 19 C -0.078 4.078 20 C 0.290 3.710 21 O -0.461 6.461 22 C 0.033 3.967 23 H 0.132 0.868 24 C -0.216 4.216 25 N -0.144 5.144 26 C -0.082 4.082 27 C -0.312 4.312 28 C -0.155 4.155 29 N -0.170 5.170 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.121 0.879 34 H 0.074 0.926 35 H 0.148 0.852 36 H 0.139 0.861 37 H 0.093 0.907 38 H 0.227 0.773 39 H 0.089 0.911 40 H 0.115 0.885 41 H 0.106 0.894 42 H 0.089 0.911 43 H 0.107 0.893 44 H 0.099 0.901 45 H 0.141 0.859 46 H 0.220 0.780 47 H 0.192 0.808 48 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -28.170 -0.263 12.079 30.651 hybrid contribution 0.808 1.166 -1.029 1.752 sum -27.361 0.903 11.051 29.522 Atomic orbital electron populations 1.21990 0.91013 1.04146 1.03127 1.21182 0.95957 0.96170 0.83526 0.91839 1.22523 0.86364 1.02429 0.96658 1.60066 1.05958 1.25972 1.39394 1.21633 0.89173 1.02492 0.93353 1.21140 0.91028 0.81572 0.83061 1.90595 1.73062 1.51958 1.34666 1.41995 1.06025 1.53876 1.21193 1.18984 0.82050 1.37775 1.07351 0.93402 1.26201 0.96227 0.97170 1.01924 1.69822 1.07642 1.44350 1.35820 0.85294 0.79756 0.78792 0.77176 1.18168 1.19842 1.15075 1.47573 1.49198 1.13331 1.21157 1.22278 1.01803 0.79533 1.04137 1.20980 0.78003 0.86758 0.85240 1.90704 1.58531 1.19446 1.77419 1.21304 0.94165 0.90912 0.90296 0.86825 1.22433 0.94477 1.03789 1.00882 1.48437 1.04116 1.30900 1.30951 1.23007 1.01708 0.91722 0.91803 1.21839 0.90761 1.08817 1.09787 1.24382 1.01771 0.94947 0.94355 1.77445 0.91326 1.24168 1.24063 0.92282 0.90160 0.89649 0.87894 0.92551 0.85152 0.86065 0.90671 0.77341 0.91070 0.88514 0.89428 0.91102 0.89323 0.90102 0.85883 0.78043 0.80850 0.78483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.19 71.98 0.66 -0.83 16 2 C 0.14 2.58 2.88 44.99 0.13 2.71 16 3 H 0.06 1.70 6.90 -2.38 -0.02 1.68 16 4 C 0.05 0.92 4.93 86.30 0.43 1.35 16 5 N -0.68 -20.86 5.85 -517.90 -3.03 -23.89 16 6 C 0.07 2.02 6.17 85.56 0.53 2.54 16 7 C 0.44 21.05 7.82 87.66 0.69 21.73 16 8 O -0.62 -37.17 15.78 -3.06 -0.05 -37.22 16 9 N -0.59 -28.72 5.09 -306.98 -1.56 -30.29 16 10 C -0.33 -20.29 10.16 84.04 0.85 -19.44 16 11 H 0.05 3.52 7.39 -2.91 -0.02 3.50 16 12 C -0.02 -0.96 5.50 84.93 0.47 -0.49 16 13 N -0.94 -58.07 13.96 21.66 0.30 -57.77 16 14 Si 0.97 39.32 27.74 68.60 1.90 41.23 16 15 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 16 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 17 H -0.23 -7.62 6.52 99.48 0.65 -6.97 16 18 N -0.58 -11.63 2.49 -822.58 -2.04 -13.68 16 19 C 0.06 0.72 7.86 127.77 1.00 1.72 16 20 C 0.50 14.23 7.15 87.66 0.63 14.85 16 21 O -0.58 -22.52 15.74 -3.04 -0.05 -22.56 16 22 C 0.14 3.34 2.92 44.25 0.13 3.47 16 23 H 0.11 3.00 7.40 -2.39 -0.02 2.99 16 24 C -0.16 -1.78 8.47 71.98 0.61 -1.17 16 25 N -0.36 -10.75 3.02 -331.09 -1.00 -11.75 16 26 C 0.06 1.49 10.57 83.54 0.88 2.37 16 27 C -0.28 -6.79 10.80 21.99 0.24 -6.55 16 28 C 0.03 0.93 12.02 85.23 1.02 1.95 16 29 N -0.35 -12.95 12.58 -57.02 -0.72 -13.67 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.08 0.50 7.67 -2.39 -0.02 0.48 16 33 H 0.10 1.38 6.88 -2.39 -0.02 1.37 16 34 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.33 12.59 8.43 -89.69 -0.76 11.83 16 36 H 0.12 2.93 8.14 -2.39 -0.02 2.91 16 37 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.39 15.49 5.76 -92.71 -0.53 14.95 16 39 H 0.28 15.78 8.31 -92.71 -0.77 15.01 16 40 H 0.10 0.36 6.97 -2.39 -0.02 0.35 16 41 H 0.09 0.85 6.53 -2.39 -0.02 0.84 16 42 H 0.07 0.87 5.99 -2.39 -0.01 0.85 16 43 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.08 0.76 7.16 -2.39 -0.02 0.74 16 45 H 0.12 0.69 4.55 -2.39 -0.01 0.68 16 46 H 0.20 2.97 7.27 -2.91 -0.02 2.95 16 47 H 0.17 2.94 8.06 -2.91 -0.02 2.91 16 48 H 0.20 4.71 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -99.80 391.59 1.67 -98.12 By element: Atomic # 1 Polarization: 47.61 SS G_CDS: -0.35 Total: 47.26 kcal Atomic # 6 Polarization: 15.95 SS G_CDS: 8.27 Total: 24.22 kcal Atomic # 7 Polarization: -142.99 SS G_CDS: -8.05 Total: -151.05 kcal Atomic # 8 Polarization: -59.69 SS G_CDS: -0.10 Total: -59.78 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 1.90 Total: 41.23 kcal Total: -99.80 1.67 -98.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666859337.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.321 kcal (2) G-P(sol) polarization free energy of solvation -99.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds