Wall clock time and date at job start Tue Mar 31 2020 20:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47696 * 2 1 4 4 C 1.50703 * 109.46985 * 239.99812 * 2 1 3 5 5 O 1.21279 * 120.00049 * 240.00315 * 4 2 1 6 6 N 1.34779 * 119.99541 * 60.00319 * 4 2 1 7 7 C 1.46499 * 120.00212 * 359.97438 * 6 4 2 8 8 C 1.46502 * 119.99726 * 179.97438 * 6 4 2 9 9 H 1.09000 * 109.47396 * 0.02562 * 8 6 4 10 10 C 1.53008 * 109.47134 * 119.99799 * 8 6 4 11 11 C 1.52995 * 109.47349 * 239.99897 * 8 6 4 12 12 N 1.46900 * 109.47149 * 54.99896 * 11 8 6 13 13 C 1.46893 * 111.00116 * 180.02562 * 12 11 8 14 14 C 1.50704 * 109.46986 * 179.97438 * 13 12 11 15 15 O 1.21284 * 120.00208 * 0.02562 * 14 13 12 16 16 N 1.34785 * 119.99760 * 179.97438 * 14 13 12 17 17 C 1.37098 * 119.99737 * 179.97438 * 16 14 13 18 18 H 1.08004 * 119.99998 * 0.02562 * 17 16 14 19 19 C 1.38948 * 119.99954 * 180.02562 * 17 16 14 20 20 N 1.31410 * 120.00036 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99942 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47213 * 90.00130 * 21 19 17 23 23 H 1.48510 * 109.46758 * 210.00115 * 21 19 17 24 24 H 1.48498 * 109.47125 * 329.99587 * 21 19 17 25 25 N 1.46500 * 109.47244 * 120.00310 * 2 1 3 26 26 C 1.34952 * 126.03727 * 34.71103 * 25 2 1 27 27 C 1.35315 * 107.74490 * 179.84345 * 26 25 2 28 28 C 1.39866 * 107.92287 * 0.41970 * 27 26 25 29 29 N 1.30833 * 108.19833 * 359.74277 * 28 27 26 30 30 H 1.08991 * 109.46868 * 59.99326 * 1 2 3 31 31 H 1.08994 * 109.47151 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46607 * 299.99997 * 1 2 3 33 33 H 1.09002 * 109.47391 * 270.00122 * 7 6 4 34 34 H 1.09001 * 109.46813 * 150.00179 * 7 6 4 35 35 H 1.09004 * 109.47041 * 30.00306 * 7 6 4 36 36 H 1.09000 * 109.46982 * 179.97438 * 10 8 6 37 37 H 1.09002 * 109.47164 * 300.00444 * 10 8 6 38 38 H 1.09003 * 109.46815 * 59.99801 * 10 8 6 39 39 H 1.08995 * 109.47154 * 174.99963 * 11 8 6 40 40 H 1.09000 * 109.47200 * 295.00353 * 11 8 6 41 41 H 1.00907 * 110.99958 * 56.04427 * 12 11 8 42 42 H 1.08998 * 109.47171 * 299.99783 * 13 12 11 43 43 H 1.09000 * 109.47109 * 60.00181 * 13 12 11 44 44 H 0.96991 * 119.99701 * 0.02562 * 16 14 13 45 45 H 0.97002 * 120.00296 * 180.02562 * 20 19 17 46 46 H 1.08006 * 126.12452 * 0.02562 * 26 25 2 47 47 H 1.08006 * 126.04237 * 180.16216 * 27 26 25 48 48 H 1.07995 * 125.90142 * 179.71895 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.7295 -1.6966 -1.1192 6 7 1.7067 -0.2499 -2.4546 7 6 0.8641 0.9409 -2.5889 8 6 2.1955 -0.9402 -3.6508 9 1 2.8009 -1.7967 -3.3542 10 6 1.0057 -1.4214 -4.4838 11 6 3.0452 0.0218 -4.4834 12 7 4.1184 0.5761 -3.6474 13 6 4.9563 1.5068 -4.4152 14 6 6.0433 2.0543 -3.5263 15 8 6.1133 1.7033 -2.3675 16 7 6.9382 2.9333 -4.0195 17 6 7.9267 3.4317 -3.2108 18 1 7.9885 3.1197 -2.1786 19 6 8.8489 4.3382 -3.7190 20 7 8.7734 4.7182 -4.9747 21 14 10.1962 5.0168 -2.6173 22 1 11.3901 4.1373 -2.6963 23 1 10.5591 6.3855 -3.0649 24 1 9.7104 5.0672 -1.2149 25 7 2.0184 -0.6907 1.1961 26 6 1.4373 -1.7526 1.7926 27 6 2.1966 -2.0929 2.8597 28 6 3.2735 -1.2026 2.9230 29 7 3.1677 -0.3617 1.9264 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3632 0.5138 0.8900 33 1 -0.1838 0.6427 -2.6224 34 1 1.1218 1.4665 -3.5084 35 1 1.0273 1.5997 -1.7359 36 1 1.3694 -1.9346 -5.3740 37 1 0.4003 -2.1068 -3.8906 38 1 0.3998 -0.5652 -4.7804 39 1 3.4813 -0.5148 -5.3259 40 1 2.4181 0.8325 -4.8543 41 1 4.6753 -0.1597 -3.2391 42 1 5.4058 0.9809 -5.2574 43 1 4.3422 2.3278 -4.7852 44 1 6.8823 3.2137 -4.9463 45 1 9.4174 5.3508 -5.3296 46 1 0.5304 -2.2448 1.4734 47 1 2.0029 -2.9055 3.5443 48 1 4.0569 -1.2082 3.6664 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666859338.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:09 Heat of formation + Delta-G solvation = 28.961519 kcal Electronic energy + Delta-G solvation = -29837.277519 eV Core-core repulsion = 25737.060923 eV Total energy + Delta-G solvation = -4100.216596 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.33580 -40.02605 -38.26153 -36.90767 -35.16973 -34.42238 -33.71367 -31.73922 -31.15384 -30.00913 -29.36338 -27.60688 -27.22395 -25.20225 -24.83656 -23.26962 -22.21458 -21.00627 -20.35705 -19.40946 -19.04631 -17.85198 -17.56011 -17.31925 -16.48156 -16.03299 -15.55866 -15.20240 -14.73221 -14.58364 -14.52503 -14.27637 -14.06018 -13.86274 -13.68098 -13.51238 -13.45275 -13.18008 -12.85712 -12.76040 -12.71043 -12.55134 -12.45615 -12.06211 -11.88757 -11.83189 -11.65963 -11.49351 -11.41249 -11.01703 -10.96756 -10.55487 -10.36218 -10.18499 -10.00695 -9.47552 -9.30608 -8.75611 -8.53089 -8.41076 -8.03981 -7.92452 -6.38811 -3.79245 1.87835 2.33790 2.53076 2.95983 2.98719 3.20639 3.28831 3.35804 3.94469 4.04715 4.17122 4.30612 4.39396 4.60370 4.72993 4.78224 4.86548 4.93473 4.98418 5.07033 5.10224 5.18269 5.22335 5.27851 5.32150 5.37753 5.42547 5.46150 5.50400 5.59328 5.69122 5.76858 5.81663 5.82751 5.92890 5.97146 6.04606 6.28159 6.40310 6.70546 6.97144 7.21105 7.26081 7.58618 7.64264 7.80077 8.08436 8.09972 8.65060 9.21682 9.57656 10.09907 10.79101 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010748 B = 0.002992 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2604.395590 B = 9354.594152 C =11327.811865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.145 3.855 3 H 0.130 0.870 4 C 0.513 3.487 5 O -0.523 6.523 6 N -0.588 5.588 7 C 0.076 3.924 8 C 0.138 3.862 9 H 0.099 0.901 10 C -0.157 4.157 11 C 0.047 3.953 12 N -0.664 5.664 13 C 0.052 3.948 14 C 0.440 3.560 15 O -0.577 6.577 16 N -0.565 5.565 17 C -0.297 4.297 18 H 0.103 0.897 19 C 0.022 3.978 20 N -0.904 5.904 21 Si 0.929 3.071 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.269 1.269 25 N -0.352 5.352 26 C 0.062 3.938 27 C -0.276 4.276 28 C 0.043 3.957 29 N -0.278 5.278 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.057 0.943 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.038 0.962 40 H 0.074 0.926 41 H 0.351 0.649 42 H 0.042 0.958 43 H 0.084 0.916 44 H 0.391 0.609 45 H 0.271 0.729 46 H 0.166 0.834 47 H 0.145 0.855 48 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.741 -10.548 3.139 25.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.038 3.962 3 H 0.148 0.852 4 C 0.299 3.701 5 O -0.398 6.398 6 N -0.321 5.321 7 C -0.067 4.067 8 C 0.035 3.965 9 H 0.117 0.883 10 C -0.215 4.215 11 C -0.084 4.084 12 N -0.296 5.296 13 C -0.081 4.081 14 C 0.225 3.775 15 O -0.461 6.461 16 N -0.202 5.202 17 C -0.427 4.427 18 H 0.120 0.880 19 C -0.180 4.180 20 N -0.546 5.546 21 Si 0.756 3.244 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.194 1.194 25 N -0.134 5.134 26 C -0.084 4.084 27 C -0.306 4.306 28 C -0.144 4.144 29 N -0.098 5.098 30 H 0.116 0.884 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.056 0.944 40 H 0.093 0.907 41 H 0.171 0.829 42 H 0.060 0.940 43 H 0.102 0.898 44 H 0.224 0.776 45 H 0.081 0.919 46 H 0.184 0.816 47 H 0.163 0.837 48 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -22.107 -9.599 3.435 24.345 hybrid contribution 0.920 -0.634 -0.446 1.203 sum -21.187 -10.233 2.988 23.718 Atomic orbital electron populations 1.22409 0.91015 1.04222 1.05274 1.21038 0.95647 0.98106 0.81384 0.85232 1.20520 0.80399 0.84789 0.84403 1.90738 1.36734 1.26447 1.85884 1.47432 1.50997 1.28818 1.04866 1.21935 0.93367 0.87324 1.04108 1.21116 0.95145 0.95633 0.84629 0.88253 1.22079 0.97939 1.01540 0.99982 1.22357 0.94296 0.97439 0.94301 1.60022 1.14798 1.21772 1.33040 1.21663 0.94852 0.96764 0.94800 1.19824 0.84696 0.84108 0.88843 1.90565 1.75251 1.62283 1.17982 1.41856 1.26172 1.38895 1.13321 1.19714 1.05143 1.21942 0.95896 0.87958 1.25244 0.99064 0.97249 0.96395 1.69612 1.37584 1.33908 1.13454 0.85867 0.80533 0.77897 0.80080 1.20427 1.20933 1.19359 1.48198 1.19501 1.24523 1.21215 1.22339 0.99828 0.91152 0.95060 1.21425 0.99325 1.06271 1.03539 1.23893 0.99139 0.94146 0.97245 1.77536 1.01458 1.24036 1.06751 0.88401 0.91180 0.90272 0.92491 0.90352 0.90868 0.91274 0.92129 0.92053 0.94358 0.90745 0.82906 0.94029 0.89797 0.77555 0.91940 0.81647 0.83747 0.80115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.16 8.47 37.16 0.31 -0.85 16 2 C 0.14 1.72 2.93 -69.08 -0.20 1.52 16 3 H 0.13 1.61 7.40 -51.93 -0.38 1.22 16 4 C 0.51 7.21 7.15 -10.98 -0.08 7.13 16 5 O -0.52 -9.64 15.75 5.56 0.09 -9.56 16 6 N -0.59 -6.50 2.49 -173.93 -0.43 -6.93 16 7 C 0.08 0.58 7.86 59.85 0.47 1.05 16 8 C 0.14 1.50 2.88 -67.93 -0.20 1.31 16 9 H 0.10 1.34 6.90 -51.93 -0.36 0.98 16 10 C -0.16 -1.16 9.19 37.16 0.34 -0.82 16 11 C 0.05 0.54 4.93 -3.83 -0.02 0.52 16 12 N -0.66 -11.01 5.85 -115.07 -0.67 -11.68 16 13 C 0.05 0.93 6.17 -4.98 -0.03 0.90 16 14 C 0.44 10.75 7.82 -10.98 -0.09 10.66 16 15 O -0.58 -16.53 15.78 5.55 0.09 -16.44 16 16 N -0.57 -14.71 5.29 -10.96 -0.06 -14.77 16 17 C -0.30 -8.55 9.68 -14.93 -0.14 -8.69 16 18 H 0.10 3.11 7.16 -52.48 -0.38 2.74 16 19 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 20 N -0.90 -25.03 13.05 55.50 0.72 -24.31 16 21 Si 0.93 21.64 29.55 -169.99 -5.02 16.62 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 24 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 25 N -0.35 -5.02 3.02 -55.99 -0.17 -5.19 16 26 C 0.06 0.74 10.58 -17.22 -0.18 0.55 16 27 C -0.28 -3.29 10.80 -40.01 -0.43 -3.72 16 28 C 0.04 0.59 12.03 -17.37 -0.21 0.38 16 29 N -0.28 -4.74 12.57 30.62 0.39 -4.35 16 30 H 0.10 0.47 4.53 -51.93 -0.24 0.23 16 31 H 0.07 0.44 7.15 -51.93 -0.37 0.07 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.27 6.95 -51.93 -0.36 -0.09 16 34 H 0.08 0.60 6.53 -51.93 -0.34 0.26 16 35 H 0.07 0.55 6.01 -51.93 -0.31 0.23 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.38 7.67 -51.93 -0.40 -0.02 16 39 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.76 6.88 -51.93 -0.36 0.40 16 41 H 0.35 6.70 8.43 -39.29 -0.33 6.37 16 42 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 44 H 0.39 9.67 7.90 -40.82 -0.32 9.35 16 45 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 46 H 0.17 1.39 7.25 -52.48 -0.38 1.01 16 47 H 0.14 1.30 8.06 -52.48 -0.42 0.88 16 48 H 0.18 1.94 8.06 -52.49 -0.42 1.52 16 LS Contribution 394.69 15.07 5.95 5.95 Total: -1.00 -38.22 394.69 -6.72 -44.94 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: -7.04 Total: 15.28 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: -0.55 Total: 10.44 kcal Atomic # 7 Polarization: -67.00 SS G_CDS: -0.22 Total: -67.22 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: 0.18 Total: -25.99 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -38.22 -6.72 -44.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666859338.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.899 kcal (2) G-P(sol) polarization free energy of solvation -38.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds