Wall clock time and date at job start Tue Mar 31 2020 20:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47696 * 2 1 4 4 C 1.50703 * 109.46985 * 239.99812 * 2 1 3 5 5 O 1.21279 * 120.00049 * 240.00315 * 4 2 1 6 6 N 1.34779 * 119.99541 * 60.00319 * 4 2 1 7 7 C 1.46499 * 120.00212 * 359.97438 * 6 4 2 8 8 C 1.46502 * 119.99726 * 179.97438 * 6 4 2 9 9 H 1.09000 * 109.47396 * 0.02562 * 8 6 4 10 10 C 1.53008 * 109.47134 * 119.99799 * 8 6 4 11 11 C 1.52995 * 109.47349 * 239.99897 * 8 6 4 12 12 N 1.46900 * 109.47149 * 54.99896 * 11 8 6 13 13 C 1.46893 * 111.00116 * 180.02562 * 12 11 8 14 14 C 1.50704 * 109.46986 * 179.97438 * 13 12 11 15 15 O 1.21284 * 120.00208 * 0.02562 * 14 13 12 16 16 N 1.34785 * 119.99760 * 179.97438 * 14 13 12 17 17 C 1.37098 * 119.99737 * 179.97438 * 16 14 13 18 18 H 1.08004 * 119.99998 * 0.02562 * 17 16 14 19 19 C 1.38948 * 119.99954 * 180.02562 * 17 16 14 20 20 N 1.31410 * 120.00036 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99942 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47213 * 90.00130 * 21 19 17 23 23 H 1.48510 * 109.46758 * 210.00115 * 21 19 17 24 24 H 1.48498 * 109.47125 * 329.99587 * 21 19 17 25 25 N 1.46500 * 109.47244 * 120.00310 * 2 1 3 26 26 C 1.34952 * 126.03727 * 34.71103 * 25 2 1 27 27 C 1.35315 * 107.74490 * 179.84345 * 26 25 2 28 28 C 1.39866 * 107.92287 * 0.41970 * 27 26 25 29 29 N 1.30833 * 108.19833 * 359.74277 * 28 27 26 30 30 H 1.08991 * 109.46868 * 59.99326 * 1 2 3 31 31 H 1.08994 * 109.47151 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46607 * 299.99997 * 1 2 3 33 33 H 1.09002 * 109.47391 * 270.00122 * 7 6 4 34 34 H 1.09001 * 109.46813 * 150.00179 * 7 6 4 35 35 H 1.09004 * 109.47041 * 30.00306 * 7 6 4 36 36 H 1.09000 * 109.46982 * 179.97438 * 10 8 6 37 37 H 1.09002 * 109.47164 * 300.00444 * 10 8 6 38 38 H 1.09003 * 109.46815 * 59.99801 * 10 8 6 39 39 H 1.08995 * 109.47154 * 174.99963 * 11 8 6 40 40 H 1.09000 * 109.47200 * 295.00353 * 11 8 6 41 41 H 1.00907 * 110.99958 * 56.04427 * 12 11 8 42 42 H 1.08998 * 109.47171 * 299.99783 * 13 12 11 43 43 H 1.09000 * 109.47109 * 60.00181 * 13 12 11 44 44 H 0.96991 * 119.99701 * 0.02562 * 16 14 13 45 45 H 0.97002 * 120.00296 * 180.02562 * 20 19 17 46 46 H 1.08006 * 126.12452 * 0.02562 * 26 25 2 47 47 H 1.08006 * 126.04237 * 180.16216 * 27 26 25 48 48 H 1.07995 * 125.90142 * 179.71895 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.7295 -1.6966 -1.1192 6 7 1.7067 -0.2499 -2.4546 7 6 0.8641 0.9409 -2.5889 8 6 2.1955 -0.9402 -3.6508 9 1 2.8009 -1.7967 -3.3542 10 6 1.0057 -1.4214 -4.4838 11 6 3.0452 0.0218 -4.4834 12 7 4.1184 0.5761 -3.6474 13 6 4.9563 1.5068 -4.4152 14 6 6.0433 2.0543 -3.5263 15 8 6.1133 1.7033 -2.3675 16 7 6.9382 2.9333 -4.0195 17 6 7.9267 3.4317 -3.2108 18 1 7.9885 3.1197 -2.1786 19 6 8.8489 4.3382 -3.7190 20 7 8.7734 4.7182 -4.9747 21 14 10.1962 5.0168 -2.6173 22 1 11.3901 4.1373 -2.6963 23 1 10.5591 6.3855 -3.0649 24 1 9.7104 5.0672 -1.2149 25 7 2.0184 -0.6907 1.1961 26 6 1.4373 -1.7526 1.7926 27 6 2.1966 -2.0929 2.8597 28 6 3.2735 -1.2026 2.9230 29 7 3.1677 -0.3617 1.9264 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3632 0.5138 0.8900 33 1 -0.1838 0.6427 -2.6224 34 1 1.1218 1.4665 -3.5084 35 1 1.0273 1.5997 -1.7359 36 1 1.3694 -1.9346 -5.3740 37 1 0.4003 -2.1068 -3.8906 38 1 0.3998 -0.5652 -4.7804 39 1 3.4813 -0.5148 -5.3259 40 1 2.4181 0.8325 -4.8543 41 1 4.6753 -0.1597 -3.2391 42 1 5.4058 0.9809 -5.2574 43 1 4.3422 2.3278 -4.7852 44 1 6.8823 3.2137 -4.9463 45 1 9.4174 5.3508 -5.3296 46 1 0.5304 -2.2448 1.4734 47 1 2.0029 -2.9055 3.5443 48 1 4.0569 -1.2082 3.6664 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666859338.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:08 Heat of formation + Delta-G solvation = -1.340595 kcal Electronic energy + Delta-G solvation = -29838.591517 eV Core-core repulsion = 25737.060923 eV Total energy + Delta-G solvation = -4101.530594 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.30262 -41.00596 -40.16361 -38.02404 -36.30904 -35.94438 -35.28759 -33.31878 -32.61087 -30.99657 -30.18167 -28.99391 -27.97379 -26.72893 -25.79996 -24.62599 -23.20140 -21.98959 -21.36940 -21.02972 -20.19182 -19.90063 -18.51766 -18.26925 -17.88010 -17.30544 -16.83333 -16.42130 -16.40060 -16.01287 -15.63359 -15.50377 -15.14786 -15.09685 -15.05078 -14.50393 -14.37993 -14.29851 -14.08700 -13.62449 -13.59171 -13.49343 -13.46925 -13.24365 -13.11601 -12.99732 -12.82421 -12.69072 -12.58025 -12.46179 -12.32815 -12.14991 -11.80690 -11.58007 -11.55380 -11.06083 -10.41444 -10.34953 -10.05374 -9.61481 -9.49814 -9.35350 -8.50739 -5.99489 0.91383 1.34215 1.37903 1.45771 1.50985 1.51399 1.98341 2.01651 2.12263 2.26220 2.87599 3.16115 3.31503 3.47256 3.59732 3.77827 3.84159 3.96922 4.11547 4.14753 4.24677 4.29596 4.32715 4.47179 4.51802 4.54173 4.59331 4.63274 4.69426 4.73099 4.76116 4.80893 4.86487 4.94550 5.08322 5.13479 5.14607 5.28197 5.36776 5.56684 5.74067 5.84909 6.07173 6.09847 6.22898 6.36755 6.56843 6.79585 7.09333 7.10515 7.52113 8.09256 8.66695 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010748 B = 0.002992 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2604.395590 B = 9354.594152 C =11327.811865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.140 3.860 3 H 0.115 0.885 4 C 0.504 3.496 5 O -0.581 6.581 6 N -0.581 5.581 7 C 0.064 3.936 8 C 0.137 3.863 9 H 0.065 0.935 10 C -0.145 4.145 11 C 0.049 3.951 12 N -0.678 5.678 13 C 0.069 3.931 14 C 0.434 3.566 15 O -0.627 6.627 16 N -0.571 5.571 17 C -0.336 4.336 18 H 0.073 0.927 19 C -0.010 4.010 20 N -0.918 5.918 21 Si 0.991 3.009 22 H -0.271 1.271 23 H -0.266 1.266 24 H -0.276 1.276 25 N -0.362 5.362 26 C 0.062 3.938 27 C -0.283 4.283 28 C 0.032 3.968 29 N -0.348 5.348 30 H 0.122 0.878 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.060 0.940 38 H 0.084 0.916 39 H 0.053 0.947 40 H 0.100 0.900 41 H 0.331 0.669 42 H 0.064 0.936 43 H 0.112 0.888 44 H 0.397 0.603 45 H 0.279 0.721 46 H 0.202 0.798 47 H 0.174 0.826 48 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.290 -10.268 1.667 27.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.034 3.966 3 H 0.132 0.868 4 C 0.291 3.709 5 O -0.461 6.461 6 N -0.313 5.313 7 C -0.077 4.077 8 C 0.033 3.967 9 H 0.083 0.917 10 C -0.203 4.203 11 C -0.081 4.081 12 N -0.309 5.309 13 C -0.064 4.064 14 C 0.222 3.778 15 O -0.513 6.513 16 N -0.209 5.209 17 C -0.466 4.466 18 H 0.091 0.909 19 C -0.210 4.210 20 N -0.559 5.559 21 Si 0.814 3.186 22 H -0.196 1.196 23 H -0.190 1.190 24 H -0.201 1.201 25 N -0.144 5.144 26 C -0.083 4.083 27 C -0.312 4.312 28 C -0.154 4.154 29 N -0.169 5.169 30 H 0.140 0.860 31 H 0.099 0.901 32 H 0.108 0.892 33 H 0.116 0.884 34 H 0.103 0.897 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.079 0.921 38 H 0.103 0.897 39 H 0.071 0.929 40 H 0.118 0.882 41 H 0.148 0.852 42 H 0.082 0.918 43 H 0.130 0.870 44 H 0.231 0.769 45 H 0.088 0.912 46 H 0.219 0.781 47 H 0.191 0.809 48 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -24.705 -9.276 1.890 26.456 hybrid contribution 1.692 -0.735 -0.035 1.845 sum -23.013 -10.011 1.854 25.164 Atomic orbital electron populations 1.22437 0.86774 1.05448 1.06971 1.21291 0.98739 0.96604 0.79962 0.86777 1.20990 0.79809 0.84332 0.85816 1.90700 1.39421 1.29137 1.86808 1.47570 1.50360 1.29280 1.04051 1.22274 0.94918 0.86110 1.04422 1.21161 0.96303 0.94360 0.84879 0.91719 1.21993 0.96359 1.02422 0.99505 1.22517 0.93033 0.98453 0.94060 1.60054 1.15014 1.21460 1.34380 1.21529 0.93320 0.97893 0.93625 1.21007 0.85129 0.82700 0.88987 1.90538 1.76576 1.63586 1.20630 1.41902 1.26260 1.39440 1.13301 1.19617 1.07469 1.24060 0.95417 0.90940 1.25995 1.00480 0.96680 0.97806 1.69657 1.38188 1.33805 1.14253 0.84971 0.77740 0.78013 0.77874 1.19638 1.18997 1.20114 1.48419 1.18979 1.25375 1.21642 1.23010 1.00617 0.90203 0.94479 1.21842 0.98570 1.06630 1.04196 1.24383 1.00121 0.93998 0.96879 1.77428 1.03985 1.26654 1.08824 0.85955 0.90096 0.89243 0.88435 0.89709 0.90989 0.90235 0.92081 0.89735 0.92905 0.88197 0.85156 0.91798 0.87033 0.76866 0.91171 0.78100 0.80877 0.78373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 8.47 71.98 0.61 -1.20 16 2 C 0.14 3.37 2.93 44.25 0.13 3.49 16 3 H 0.11 3.01 7.40 -2.39 -0.02 2.99 16 4 C 0.50 14.47 7.15 87.66 0.63 15.09 16 5 O -0.58 -22.68 15.75 -3.02 -0.05 -22.73 16 6 N -0.58 -12.24 2.49 -822.57 -2.04 -14.28 16 7 C 0.06 0.79 7.86 127.77 1.00 1.80 16 8 C 0.14 2.81 2.88 44.99 0.13 2.94 16 9 H 0.06 1.81 6.90 -2.39 -0.02 1.79 16 10 C -0.14 -1.70 9.19 71.98 0.66 -1.03 16 11 C 0.05 1.04 4.93 86.30 0.43 1.46 16 12 N -0.68 -22.38 5.85 -517.96 -3.03 -25.41 16 13 C 0.07 2.39 6.17 85.56 0.53 2.92 16 14 C 0.43 21.74 7.82 87.66 0.69 22.43 16 15 O -0.63 -37.71 15.78 -3.04 -0.05 -37.75 16 16 N -0.57 -30.40 5.29 -306.97 -1.62 -32.03 16 17 C -0.34 -19.92 9.68 84.04 0.81 -19.11 16 18 H 0.07 4.66 7.16 -2.91 -0.02 4.64 16 19 C -0.01 -0.53 5.50 84.93 0.47 -0.06 16 20 N -0.92 -50.35 13.05 21.66 0.28 -50.07 16 21 Si 0.99 44.46 29.55 68.60 2.03 46.49 16 22 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 23 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 24 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 25 N -0.36 -10.64 3.02 -331.05 -1.00 -11.64 16 26 C 0.06 1.45 10.58 83.54 0.88 2.34 16 27 C -0.28 -6.66 10.80 21.99 0.24 -6.42 16 28 C 0.03 0.92 12.03 85.24 1.02 1.95 16 29 N -0.35 -12.64 12.57 -57.03 -0.72 -13.35 16 30 H 0.12 0.74 4.53 -2.39 -0.01 0.73 16 31 H 0.08 0.77 7.15 -2.39 -0.02 0.76 16 32 H 0.09 0.87 8.14 -2.39 -0.02 0.86 16 33 H 0.10 0.46 6.95 -2.39 -0.02 0.45 16 34 H 0.08 0.98 6.53 -2.39 -0.02 0.97 16 35 H 0.07 0.94 6.01 -2.38 -0.01 0.93 16 36 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.08 0.63 7.67 -2.39 -0.02 0.61 16 39 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.10 1.65 6.88 -2.39 -0.02 1.63 16 41 H 0.33 13.22 8.43 -89.69 -0.76 12.46 16 42 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16 44 H 0.40 19.77 7.90 -92.71 -0.73 19.04 16 45 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 46 H 0.20 2.93 7.25 -2.91 -0.02 2.91 16 47 H 0.17 2.86 8.06 -2.91 -0.02 2.83 16 48 H 0.20 4.52 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -89.85 394.69 1.54 -88.31 By element: Atomic # 1 Polarization: 46.36 SS G_CDS: -0.49 Total: 45.87 kcal Atomic # 6 Polarization: 18.37 SS G_CDS: 8.23 Total: 26.59 kcal Atomic # 7 Polarization: -138.65 SS G_CDS: -8.13 Total: -146.78 kcal Atomic # 8 Polarization: -60.39 SS G_CDS: -0.10 Total: -60.49 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -89.85 1.54 -88.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666859338.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.970 kcal (2) G-P(sol) polarization free energy of solvation -89.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds