Wall clock time and date at job start Tue Mar 31 2020 20:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.47207 * 2 1 4 4 C 1.53003 * 109.47201 * 119.99776 * 2 1 3 5 5 N 1.46895 * 109.47100 * 175.00057 * 4 2 1 6 6 C 1.46901 * 111.00022 * 179.97438 * 5 4 2 7 7 C 1.50698 * 109.47400 * 180.02562 * 6 5 4 8 8 O 1.21293 * 119.99736 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99937 * 180.02562 * 7 6 5 10 10 C 1.37096 * 119.99465 * 180.02562 * 9 7 6 11 11 H 1.07994 * 120.00321 * 359.97438 * 10 9 7 12 12 C 1.38957 * 119.99348 * 179.97438 * 10 9 7 13 13 N 1.31404 * 120.00326 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99804 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47306 * 89.99862 * 14 12 10 16 16 H 1.48493 * 109.47251 * 210.00278 * 14 12 10 17 17 H 1.48500 * 109.47069 * 330.00095 * 14 12 10 18 18 N 1.46498 * 109.47275 * 239.99955 * 2 1 3 19 19 C 1.46498 * 120.00114 * 305.45658 * 18 2 1 20 20 C 1.34781 * 119.99855 * 125.45820 * 18 2 1 21 21 O 1.21285 * 119.99889 * 185.45456 * 20 18 2 22 22 C 1.50703 * 120.00221 * 5.45913 * 20 18 2 23 23 H 1.09002 * 109.47072 * 44.45529 * 22 20 18 24 24 C 1.53002 * 109.46780 * 284.45581 * 22 20 18 25 25 N 1.46497 * 109.47355 * 164.45832 * 22 20 18 26 26 C 1.34948 * 126.03875 * 84.71047 * 25 22 20 27 27 C 1.35321 * 107.74366 * 179.84141 * 26 25 22 28 28 C 1.39869 * 107.91760 * 0.42223 * 27 26 25 29 29 N 1.30837 * 108.20516 * 359.74014 * 28 27 26 30 30 H 1.09004 * 109.47038 * 60.00322 * 1 2 3 31 31 H 1.09000 * 109.47001 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47768 * 300.00155 * 1 2 3 33 33 H 1.09000 * 109.46742 * 295.00243 * 4 2 1 34 34 H 1.09002 * 109.46955 * 55.00071 * 4 2 1 35 35 H 1.00904 * 110.99919 * 56.05551 * 5 4 2 36 36 H 1.08999 * 109.47426 * 300.00349 * 6 5 4 37 37 H 1.08999 * 109.46722 * 60.00015 * 6 5 4 38 38 H 0.96993 * 119.99899 * 0.02562 * 9 7 6 39 39 H 0.97005 * 120.00173 * 179.97438 * 13 12 10 40 40 H 1.09001 * 109.46844 * 91.73442 * 19 18 2 41 41 H 1.08999 * 109.47103 * 331.73660 * 19 18 2 42 42 H 1.09001 * 109.46937 * 211.73583 * 19 18 2 43 43 H 1.09001 * 109.47185 * 67.56160 * 24 22 20 44 44 H 1.08997 * 109.47121 * 187.56148 * 24 22 20 45 45 H 1.09005 * 109.46999 * 307.55948 * 24 22 20 46 46 H 1.07996 * 126.12804 * 0.02562 * 26 25 22 47 47 H 1.07997 * 126.03776 * 180.16433 * 27 26 25 48 48 H 1.08005 * 125.89362 * 179.71043 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5040 -0.8266 1.1904 6 6 4.0303 -1.5147 2.3768 7 6 5.5317 -1.6032 2.2814 8 8 6.1067 -1.1383 1.3199 9 7 6.2355 -2.1989 3.2645 10 6 7.6013 -2.2789 3.1779 11 1 8.1133 -1.8650 2.3218 12 6 8.3269 -2.8926 4.1916 13 7 7.7039 -3.3967 5.2330 14 14 10.1880 -3.0023 4.0734 15 1 10.7956 -1.8029 4.7038 16 1 10.6576 -4.2228 4.7768 17 1 10.5902 -3.0684 2.6454 18 7 2.0183 -0.6906 -1.1961 19 6 1.5686 -2.0536 -1.4900 20 6 2.8814 -0.0720 -2.0263 21 8 3.2089 -0.6033 -3.0662 22 6 3.4394 1.2797 -1.6623 23 1 3.7397 1.2787 -0.6144 24 6 2.3691 2.3501 -1.8851 25 7 4.6031 1.5703 -2.5034 26 6 4.5737 2.1053 -3.7420 27 6 5.8514 2.2164 -4.1736 28 6 6.6897 1.7238 -3.1681 29 7 5.9425 1.3362 -2.1665 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.7515 -0.1582 2.1369 34 1 1.6053 -1.7198 1.2952 35 1 3.9279 0.0827 1.0825 36 1 3.7558 -0.9569 3.2721 37 1 3.6095 -2.5187 2.4310 38 1 5.7756 -2.5710 4.0331 39 1 8.2104 -3.8255 5.9405 40 1 0.6858 -2.0152 -2.1281 41 1 1.3220 -2.5635 -0.5587 42 1 2.3636 -2.5960 -2.0018 43 1 1.5620 2.2122 -1.1655 44 1 2.8099 3.3380 -1.7517 45 1 1.9728 2.2626 -2.8968 46 1 3.6892 2.3957 -4.2893 47 1 6.1677 2.6114 -5.1277 48 1 7.7676 1.6719 -3.2114 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666859339.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:12 Heat of formation + Delta-G solvation = 28.759484 kcal Electronic energy + Delta-G solvation = -30317.696896 eV Core-core repulsion = 26217.471540 eV Total energy + Delta-G solvation = -4100.225357 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.26519 -39.99982 -38.27779 -37.13888 -34.67313 -34.64619 -33.71269 -31.44244 -31.11962 -30.02089 -29.63452 -27.75994 -27.30369 -25.06820 -24.54780 -23.31862 -22.03716 -21.05152 -20.68770 -19.33627 -19.03536 -17.90501 -17.69937 -17.19795 -16.26960 -15.70566 -15.56527 -15.38722 -14.81586 -14.56663 -14.49237 -14.37122 -14.05585 -13.85776 -13.57945 -13.55563 -13.39236 -12.96640 -12.95314 -12.82143 -12.61883 -12.50829 -12.30506 -12.18467 -11.95278 -11.85106 -11.71563 -11.50825 -11.43306 -11.12603 -10.99629 -10.38117 -10.35091 -10.17017 -10.02095 -9.45666 -9.20806 -8.76890 -8.42770 -8.41674 -8.08453 -7.91048 -6.37485 -3.77578 1.96995 2.40376 2.59753 2.99307 3.08786 3.21537 3.29788 3.37025 3.92998 3.97502 4.14449 4.27522 4.38670 4.43292 4.68130 4.70646 4.82059 4.90846 5.04376 5.10316 5.13053 5.19276 5.26038 5.30742 5.32926 5.37212 5.44424 5.49927 5.52215 5.61339 5.69892 5.76310 5.76617 5.89567 5.92424 5.95148 6.16512 6.27221 6.37171 6.82564 7.07173 7.10826 7.26984 7.52496 7.60217 7.93630 8.08336 8.11201 8.66429 9.23289 9.58957 10.11246 10.80460 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010560 B = 0.003405 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2650.871716 B = 8222.345985 C =10207.227991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.125 3.875 3 H 0.092 0.908 4 C 0.041 3.959 5 N -0.663 5.663 6 C 0.053 3.947 7 C 0.438 3.562 8 O -0.571 6.571 9 N -0.566 5.566 10 C -0.296 4.296 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.904 5.904 14 Si 0.929 3.071 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.269 1.269 18 N -0.588 5.588 19 C 0.095 3.905 20 C 0.516 3.484 21 O -0.526 6.526 22 C 0.146 3.854 23 H 0.125 0.875 24 C -0.166 4.166 25 N -0.355 5.355 26 C 0.063 3.937 27 C -0.277 4.277 28 C 0.041 3.959 29 N -0.266 5.266 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.041 0.959 34 H 0.078 0.922 35 H 0.344 0.656 36 H 0.043 0.957 37 H 0.085 0.915 38 H 0.391 0.609 39 H 0.270 0.730 40 H 0.049 0.951 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.089 0.911 44 H 0.082 0.918 45 H 0.073 0.927 46 H 0.165 0.835 47 H 0.144 0.856 48 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.353 11.101 -10.479 23.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.020 3.980 3 H 0.110 0.890 4 C -0.089 4.089 5 N -0.296 5.296 6 C -0.080 4.080 7 C 0.223 3.777 8 O -0.454 6.454 9 N -0.203 5.203 10 C -0.425 4.425 11 H 0.121 0.879 12 C -0.180 4.180 13 N -0.546 5.546 14 Si 0.756 3.244 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.194 1.194 18 N -0.321 5.321 19 C -0.047 4.047 20 C 0.302 3.698 21 O -0.401 6.401 22 C 0.039 3.961 23 H 0.143 0.857 24 C -0.224 4.224 25 N -0.138 5.138 26 C -0.082 4.082 27 C -0.307 4.307 28 C -0.146 4.146 29 N -0.085 5.085 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.059 0.941 34 H 0.097 0.903 35 H 0.164 0.836 36 H 0.061 0.939 37 H 0.103 0.897 38 H 0.224 0.776 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.108 0.892 44 H 0.101 0.899 45 H 0.092 0.908 46 H 0.182 0.818 47 H 0.162 0.838 48 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -17.834 9.902 -10.661 23.016 hybrid contribution 0.553 0.463 0.552 0.908 sum -17.281 10.365 -10.109 22.544 Atomic orbital electron populations 1.22109 0.93745 1.03313 1.02736 1.21473 0.94742 0.96714 0.85026 0.89030 1.22442 0.89839 1.01124 0.95520 1.60045 1.02804 1.26275 1.40431 1.21663 0.95619 0.99745 0.90968 1.19812 0.87951 0.84776 0.85157 1.90602 1.70887 1.51201 1.32727 1.41843 1.07365 1.51234 1.19853 1.19711 0.81502 1.34911 1.06417 0.87933 1.25235 1.00607 0.96845 0.95268 1.69610 1.36606 1.38918 1.09479 0.85874 0.82335 0.77572 0.78644 1.20446 1.20966 1.19369 1.47483 1.45235 1.15719 1.23678 1.21506 0.99844 0.82270 1.01080 1.20489 0.78408 0.87085 0.83833 1.90731 1.58541 1.66453 1.24346 1.21025 0.84497 0.93621 0.96983 0.85732 1.22290 0.97691 0.98297 1.04132 1.48227 1.04892 1.47993 1.12672 1.22321 0.99546 0.99069 0.87283 1.21420 0.91830 1.14776 1.02647 1.23939 1.00357 0.98431 0.91915 1.77727 0.85809 1.21381 1.23618 0.91788 0.91532 0.90939 0.94055 0.90321 0.83643 0.93893 0.89688 0.77607 0.91976 0.93217 0.91034 0.90736 0.89247 0.89923 0.90849 0.81759 0.83809 0.80141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.89 9.11 37.15 0.34 -0.55 16 2 C 0.12 1.05 2.19 -67.93 -0.15 0.90 16 3 H 0.09 0.68 4.08 -51.93 -0.21 0.47 16 4 C 0.04 0.42 5.05 -3.83 -0.02 0.40 16 5 N -0.66 -10.16 5.85 -115.06 -0.67 -10.84 16 6 C 0.05 0.91 6.17 -4.98 -0.03 0.88 16 7 C 0.44 10.52 7.82 -10.98 -0.09 10.44 16 8 O -0.57 -16.07 15.78 5.55 0.09 -15.98 16 9 N -0.57 -14.60 5.29 -10.96 -0.06 -14.65 16 10 C -0.30 -8.47 9.68 -14.93 -0.14 -8.61 16 11 H 0.10 3.12 7.16 -52.49 -0.38 2.74 16 12 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 13 N -0.90 -25.00 13.05 55.50 0.72 -24.27 16 14 Si 0.93 21.66 29.55 -169.99 -5.02 16.64 16 15 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 18 N -0.59 -6.84 2.49 -173.93 -0.43 -7.28 16 19 C 0.10 1.06 9.25 59.85 0.55 1.62 16 20 C 0.52 7.58 6.96 -10.98 -0.08 7.50 16 21 O -0.53 -9.89 15.98 5.55 0.09 -9.80 16 22 C 0.15 1.85 2.86 -69.08 -0.20 1.66 16 23 H 0.13 1.66 6.10 -51.93 -0.32 1.34 16 24 C -0.17 -1.26 8.33 37.16 0.31 -0.95 16 25 N -0.36 -5.49 3.14 -55.99 -0.18 -5.67 16 26 C 0.06 0.83 10.38 -17.22 -0.18 0.65 16 27 C -0.28 -3.64 10.80 -40.01 -0.43 -4.08 16 28 C 0.04 0.63 12.03 -17.37 -0.21 0.42 16 29 N -0.27 -4.98 12.58 30.63 0.39 -4.60 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.37 7.49 -51.93 -0.39 -0.02 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 0.77 7.07 -51.93 -0.37 0.41 16 35 H 0.34 5.59 7.24 -39.29 -0.28 5.31 16 36 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.39 9.59 7.90 -40.82 -0.32 9.27 16 39 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 40 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.68 6.75 -51.93 -0.35 0.33 16 42 H 0.07 1.05 7.56 -51.93 -0.39 0.66 16 43 H 0.09 0.47 5.97 -51.93 -0.31 0.16 16 44 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.07 0.52 7.55 -51.93 -0.39 0.13 16 46 H 0.17 1.58 7.48 -52.49 -0.39 1.18 16 47 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 48 H 0.18 2.28 8.06 -52.48 -0.42 1.86 16 LS Contribution 394.90 15.07 5.95 5.95 Total: -1.00 -38.45 394.90 -6.59 -45.04 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: -7.05 Total: 14.70 kcal Atomic # 6 Polarization: 11.19 SS G_CDS: -0.42 Total: 10.77 kcal Atomic # 7 Polarization: -67.08 SS G_CDS: -0.23 Total: -67.31 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: 0.18 Total: -25.78 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -38.45 -6.59 -45.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666859339.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.797 kcal (2) G-P(sol) polarization free energy of solvation -38.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds