Wall clock time and date at job start Tue Mar 31 2020 20:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.47207 * 2 1 4 4 C 1.53003 * 109.47201 * 119.99776 * 2 1 3 5 5 N 1.46895 * 109.47100 * 175.00057 * 4 2 1 6 6 C 1.46901 * 111.00022 * 179.97438 * 5 4 2 7 7 C 1.50698 * 109.47400 * 180.02562 * 6 5 4 8 8 O 1.21293 * 119.99736 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99937 * 180.02562 * 7 6 5 10 10 C 1.37096 * 119.99465 * 180.02562 * 9 7 6 11 11 H 1.07994 * 120.00321 * 359.97438 * 10 9 7 12 12 C 1.38957 * 119.99348 * 179.97438 * 10 9 7 13 13 N 1.31404 * 120.00326 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99804 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47306 * 89.99862 * 14 12 10 16 16 H 1.48493 * 109.47251 * 210.00278 * 14 12 10 17 17 H 1.48500 * 109.47069 * 330.00095 * 14 12 10 18 18 N 1.46498 * 109.47275 * 239.99955 * 2 1 3 19 19 C 1.46498 * 120.00114 * 305.45658 * 18 2 1 20 20 C 1.34781 * 119.99855 * 125.45820 * 18 2 1 21 21 O 1.21285 * 119.99889 * 185.45456 * 20 18 2 22 22 C 1.50703 * 120.00221 * 5.45913 * 20 18 2 23 23 H 1.09002 * 109.47072 * 44.45529 * 22 20 18 24 24 C 1.53002 * 109.46780 * 284.45581 * 22 20 18 25 25 N 1.46497 * 109.47355 * 164.45832 * 22 20 18 26 26 C 1.34948 * 126.03875 * 84.71047 * 25 22 20 27 27 C 1.35321 * 107.74366 * 179.84141 * 26 25 22 28 28 C 1.39869 * 107.91760 * 0.42223 * 27 26 25 29 29 N 1.30837 * 108.20516 * 359.74014 * 28 27 26 30 30 H 1.09004 * 109.47038 * 60.00322 * 1 2 3 31 31 H 1.09000 * 109.47001 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47768 * 300.00155 * 1 2 3 33 33 H 1.09000 * 109.46742 * 295.00243 * 4 2 1 34 34 H 1.09002 * 109.46955 * 55.00071 * 4 2 1 35 35 H 1.00904 * 110.99919 * 56.05551 * 5 4 2 36 36 H 1.08999 * 109.47426 * 300.00349 * 6 5 4 37 37 H 1.08999 * 109.46722 * 60.00015 * 6 5 4 38 38 H 0.96993 * 119.99899 * 0.02562 * 9 7 6 39 39 H 0.97005 * 120.00173 * 179.97438 * 13 12 10 40 40 H 1.09001 * 109.46844 * 91.73442 * 19 18 2 41 41 H 1.08999 * 109.47103 * 331.73660 * 19 18 2 42 42 H 1.09001 * 109.46937 * 211.73583 * 19 18 2 43 43 H 1.09001 * 109.47185 * 67.56160 * 24 22 20 44 44 H 1.08997 * 109.47121 * 187.56148 * 24 22 20 45 45 H 1.09005 * 109.46999 * 307.55948 * 24 22 20 46 46 H 1.07996 * 126.12804 * 0.02562 * 26 25 22 47 47 H 1.07997 * 126.03776 * 180.16433 * 27 26 25 48 48 H 1.08005 * 125.89362 * 179.71043 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5040 -0.8266 1.1904 6 6 4.0303 -1.5147 2.3768 7 6 5.5317 -1.6032 2.2814 8 8 6.1067 -1.1383 1.3199 9 7 6.2355 -2.1989 3.2645 10 6 7.6013 -2.2789 3.1779 11 1 8.1133 -1.8650 2.3218 12 6 8.3269 -2.8926 4.1916 13 7 7.7039 -3.3967 5.2330 14 14 10.1880 -3.0023 4.0734 15 1 10.7956 -1.8029 4.7038 16 1 10.6576 -4.2228 4.7768 17 1 10.5902 -3.0684 2.6454 18 7 2.0183 -0.6906 -1.1961 19 6 1.5686 -2.0536 -1.4900 20 6 2.8814 -0.0720 -2.0263 21 8 3.2089 -0.6033 -3.0662 22 6 3.4394 1.2797 -1.6623 23 1 3.7397 1.2787 -0.6144 24 6 2.3691 2.3501 -1.8851 25 7 4.6031 1.5703 -2.5034 26 6 4.5737 2.1053 -3.7420 27 6 5.8514 2.2164 -4.1736 28 6 6.6897 1.7238 -3.1681 29 7 5.9425 1.3362 -2.1665 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.7515 -0.1582 2.1369 34 1 1.6053 -1.7198 1.2952 35 1 3.9279 0.0827 1.0825 36 1 3.7558 -0.9569 3.2721 37 1 3.6095 -2.5187 2.4310 38 1 5.7756 -2.5710 4.0331 39 1 8.2104 -3.8255 5.9405 40 1 0.6858 -2.0152 -2.1281 41 1 1.3220 -2.5635 -0.5587 42 1 2.3636 -2.5960 -2.0018 43 1 1.5620 2.2122 -1.1655 44 1 2.8099 3.3380 -1.7517 45 1 1.9728 2.2626 -2.8968 46 1 3.6892 2.3957 -4.2893 47 1 6.1677 2.6114 -5.1277 48 1 7.7676 1.6719 -3.2114 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666859339.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:11 Heat of formation + Delta-G solvation = -1.765823 kcal Electronic energy + Delta-G solvation = -30319.020573 eV Core-core repulsion = 26217.471540 eV Total energy + Delta-G solvation = -4101.549033 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.31849 -41.02230 -40.12272 -38.24145 -36.17836 -35.62774 -35.48184 -33.27796 -32.21787 -31.10525 -30.61737 -28.99645 -28.23122 -26.68282 -25.46400 -24.61874 -22.97620 -22.13048 -21.68294 -21.08643 -20.11342 -19.89063 -18.73532 -18.25721 -17.76327 -16.97619 -16.69412 -16.56074 -16.41561 -15.98355 -15.73410 -15.52770 -15.30666 -15.15745 -14.78714 -14.72478 -14.43803 -14.15729 -13.92255 -13.68513 -13.57859 -13.53268 -13.39930 -13.25227 -13.11079 -13.00892 -12.82540 -12.74898 -12.64522 -12.47364 -12.41877 -12.15162 -11.81761 -11.52137 -11.51840 -11.12353 -10.36649 -10.35326 -10.01892 -9.69048 -9.48535 -9.30417 -8.48702 -5.96685 0.90770 1.34882 1.37745 1.38235 1.51262 1.59352 1.99197 2.05607 2.07909 2.27432 2.88118 3.18592 3.23605 3.48592 3.57876 3.65348 3.85120 3.95242 4.03040 4.13459 4.23267 4.32222 4.34228 4.47548 4.54013 4.55928 4.57164 4.64372 4.65939 4.72321 4.75522 4.85405 4.88476 4.92801 5.01630 5.05139 5.15358 5.34003 5.38883 5.51388 5.74214 5.86016 6.08178 6.11396 6.28685 6.36785 6.59775 6.82023 7.04323 7.12396 7.55693 8.13317 8.68790 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010560 B = 0.003405 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2650.871716 B = 8222.345985 C =10207.227991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.122 3.878 3 H 0.103 0.897 4 C 0.040 3.960 5 N -0.684 5.684 6 C 0.070 3.930 7 C 0.432 3.568 8 O -0.619 6.619 9 N -0.574 5.574 10 C -0.333 4.333 11 H 0.072 0.928 12 C -0.010 4.010 13 N -0.919 5.919 14 Si 0.989 3.011 15 H -0.269 1.269 16 H -0.267 1.267 17 H -0.278 1.278 18 N -0.582 5.582 19 C 0.094 3.906 20 C 0.507 3.493 21 O -0.581 6.581 22 C 0.141 3.859 23 H 0.113 0.887 24 C -0.156 4.156 25 N -0.363 5.363 26 C 0.065 3.935 27 C -0.282 4.282 28 C 0.028 3.972 29 N -0.339 5.339 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.336 0.664 36 H 0.072 0.928 37 H 0.102 0.898 38 H 0.396 0.604 39 H 0.278 0.722 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.035 0.965 43 H 0.118 0.882 44 H 0.092 0.908 45 H 0.082 0.918 46 H 0.201 0.799 47 H 0.174 0.826 48 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.009 12.151 -9.822 26.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.019 3.981 3 H 0.121 0.879 4 C -0.089 4.089 5 N -0.317 5.317 6 C -0.063 4.063 7 C 0.219 3.781 8 O -0.505 6.505 9 N -0.212 5.212 10 C -0.462 4.462 11 H 0.090 0.910 12 C -0.210 4.210 13 N -0.560 5.560 14 Si 0.813 3.187 15 H -0.194 1.194 16 H -0.192 1.192 17 H -0.203 1.203 18 N -0.313 5.313 19 C -0.048 4.048 20 C 0.294 3.706 21 O -0.460 6.460 22 C 0.034 3.966 23 H 0.130 0.870 24 C -0.214 4.214 25 N -0.145 5.145 26 C -0.081 4.081 27 C -0.311 4.311 28 C -0.158 4.158 29 N -0.160 5.160 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.114 0.886 33 H 0.088 0.912 34 H 0.104 0.896 35 H 0.154 0.846 36 H 0.090 0.910 37 H 0.120 0.880 38 H 0.230 0.770 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.109 0.891 42 H 0.054 0.946 43 H 0.136 0.864 44 H 0.111 0.889 45 H 0.100 0.900 46 H 0.218 0.782 47 H 0.192 0.808 48 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -20.554 10.947 -9.935 25.318 hybrid contribution 1.316 0.117 0.348 1.366 sum -19.239 11.063 -9.587 24.175 Atomic orbital electron populations 1.22084 0.90589 1.04061 1.04342 1.21787 0.96954 0.96669 0.82735 0.87878 1.22619 0.86337 1.02424 0.97512 1.60034 1.05955 1.25916 1.39768 1.21493 0.90106 1.01571 0.93095 1.21069 0.90902 0.82535 0.83545 1.90579 1.72824 1.52671 1.34395 1.41901 1.06704 1.51957 1.20638 1.19594 0.83235 1.36940 1.06470 0.91007 1.25962 1.04682 0.95809 0.94548 1.69656 1.38141 1.38582 1.09655 0.84995 0.77196 0.78398 0.78153 1.19403 1.19201 1.20344 1.47644 1.44094 1.15692 1.23884 1.21547 0.99182 0.81987 1.02091 1.20936 0.78391 0.87738 0.83538 1.90691 1.60667 1.67869 1.26807 1.21304 0.84941 0.94328 0.95980 0.86954 1.22341 0.96682 0.96791 1.05567 1.48454 1.04380 1.47943 1.13770 1.22992 1.00925 0.97602 0.86555 1.21823 0.91524 1.14504 1.03292 1.24374 1.01352 0.97971 0.92138 1.77613 0.88063 1.24220 1.26117 0.90879 0.91276 0.88628 0.91167 0.89572 0.84561 0.91006 0.87970 0.76973 0.91274 0.90983 0.89126 0.94611 0.86402 0.88894 0.89952 0.78188 0.80833 0.78829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.11 71.98 0.66 -0.36 16 2 C 0.12 1.70 2.19 44.99 0.10 1.80 16 3 H 0.10 1.22 4.08 -2.38 -0.01 1.21 16 4 C 0.04 0.70 5.05 86.30 0.44 1.13 16 5 N -0.68 -20.42 5.85 -517.94 -3.03 -23.45 16 6 C 0.07 2.33 6.17 85.56 0.53 2.86 16 7 C 0.43 21.31 7.82 87.66 0.69 21.99 16 8 O -0.62 -36.60 15.78 -3.07 -0.05 -36.65 16 9 N -0.57 -30.40 5.29 -306.98 -1.62 -32.02 16 10 C -0.33 -19.73 9.68 84.04 0.81 -18.91 16 11 H 0.07 4.63 7.16 -2.91 -0.02 4.61 16 12 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 13 N -0.92 -50.57 13.05 21.66 0.28 -50.28 16 14 Si 0.99 44.73 29.55 68.60 2.03 46.76 16 15 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 16 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 17 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 18 N -0.58 -12.92 2.49 -822.58 -2.04 -14.96 16 19 C 0.09 2.03 9.25 127.77 1.18 3.21 16 20 C 0.51 15.01 6.96 87.66 0.61 15.62 16 21 O -0.58 -22.75 15.98 -3.05 -0.05 -22.79 16 22 C 0.14 3.56 2.86 44.25 0.13 3.69 16 23 H 0.11 3.07 6.10 -2.39 -0.01 3.05 16 24 C -0.16 -2.01 8.33 71.98 0.60 -1.41 16 25 N -0.36 -11.48 3.14 -331.06 -1.04 -12.52 16 26 C 0.06 1.66 10.38 83.54 0.87 2.53 16 27 C -0.28 -7.35 10.80 21.99 0.24 -7.12 16 28 C 0.03 0.90 12.03 85.24 1.02 1.92 16 29 N -0.34 -13.50 12.58 -57.02 -0.72 -14.22 16 30 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.07 0.47 7.49 -2.39 -0.02 0.45 16 32 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.09 1.39 7.07 -2.39 -0.02 1.38 16 35 H 0.34 10.98 7.24 -89.69 -0.65 10.33 16 36 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 38 H 0.40 19.68 7.90 -92.71 -0.73 18.95 16 39 H 0.28 14.27 8.31 -92.70 -0.77 13.50 16 40 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.09 1.56 6.75 -2.39 -0.02 1.55 16 42 H 0.03 1.05 7.56 -2.39 -0.02 1.03 16 43 H 0.12 0.80 5.97 -2.39 -0.01 0.79 16 44 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.08 0.94 7.55 -2.38 -0.02 0.93 16 46 H 0.20 3.41 7.48 -2.91 -0.02 3.38 16 47 H 0.17 3.26 8.06 -2.91 -0.02 3.23 16 48 H 0.19 5.25 8.06 -2.91 -0.02 5.23 16 Total: -1.00 -90.40 394.90 1.71 -88.69 By element: Atomic # 1 Polarization: 44.97 SS G_CDS: -0.38 Total: 44.59 kcal Atomic # 6 Polarization: 18.53 SS G_CDS: 8.33 Total: 26.86 kcal Atomic # 7 Polarization: -139.28 SS G_CDS: -8.17 Total: -147.45 kcal Atomic # 8 Polarization: -59.35 SS G_CDS: -0.10 Total: -59.45 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -90.40 1.71 -88.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666859339.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.924 kcal (2) G-P(sol) polarization free energy of solvation -90.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds